Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03527 and BPUM_2102
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:03
# Commandline: needle
# -asequence dna-align/BSNT_03527___yqjW.1.24716.seq
# -bsequence dna-align/BPUM_2102___polY2.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03527___yqjW-BPUM_2102___polY2.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03527___yqjW-BPUM_2102___polY2.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03527___yqjW
# 2: BPUM_2102___polY2
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1339
# Identity: 821/1339 (61.3%)
# Similarity: 821/1339 (61.3%)
# Gaps: 209/1339 (15.6%)
# Score: 2242.0
#
#
#=======================================
BSNT_03527___ 1 ATGAAAGAAAAAGTGATTTTTCTCGTTGACATGCAATCGTTTTATGCATC 50
|||||.|||..||..|||.|.||.||.||.|||||||||||||||||.||
BPUM_2102___p 1 ATGAATGAACGAGCCATTCTGCTTGTGGATATGCAATCGTTTTATGCGTC 50
BSNT_03527___ 51 TGTAGAGAAAGCGGAAAATCCACATTTGAAAAATAGGCCCGTCATTGTTT 100
.||.||.||||.|||...|||.||.|||||..||..|||..||||.||.|
BPUM_2102___p 51 AGTCGAAAAAGTGGAGGCTCCCCACTTGAAGGATGTGCCGCTCATCGTCT 100
BSNT_03527___ 101 CGGGTGACCCTGAAAAAAGGGGCGGA-----GTGGTATTGGCTGCCTGCC 145
|.||.||.|||| ||.|||||| ||.|||.|.||||||||||
BPUM_2102___p 101 CTGGAGATCCTG-----AGCGGCGGAGCGGGGTCGTACTTGCTGCCTGCC 145
BSNT_03527___ 146 CGCTGGCGAAACAAAAAGGTGTGGTG-----AATGCTTCACGGCTGTGGG 190
||||.||.|| ||||.|| ||.| |||||.|||.|..|.||||
BPUM_2102___p 146 CGCTTGCTAA--AAAACGG---GGCGTACAAAATGCATCAAGATTATGGG 190
BSNT_03527___ 191 AGGCGCAGGAAAAGTGTCCTGAGGCTGTTGTGCTCCGGCCGCGTATGCAG 240
|.||.|||||.||.||.||.||.|||||.||..|.||.||.||.||||||
BPUM_2102___p 191 AAGCACAGGAGAAATGCCCCGAAGCTGTCGTCGTACGCCCCCGGATGCAG 240
BSNT_03527___ 241 CGGTATATTGATGTATCACTGCAA--ATTACGGCCATTCTCGAGGAGTAT 288
||.|||.|||| |||..|||..| ||.||.|...|.||.||..|.||.
BPUM_2102___p 241 CGTTATCTTGA--TATTTCTGTCATGATCACAGAACTGCTTGAACAATAC 288
BSNT_03527___ 289 ACAGACCTTGTGGAGCCTTATTCCATCGATGAACAGTTCATGGACATTAC 338
|||||.|||||.||.||.|||||.||.||||||||.||..|.||.|||||
BPUM_2102___p 289 ACAGATCTTGTCGAACCATATTCAATTGATGAACAATTTCTCGATATTAC 338
BSNT_03527___ 339 AGGCAGCCAGAAGCTGTTTGGGACGCCGATGGAGATCGCGAAAAGCATTC 388
||||||.|.||..||..|.||..|.||....||||||||..|||..||.|
BPUM_2102___p 339 AGGCAGTCTGACACTACTCGGTTCTCCCCGTGAGATCGCTCAAAATATAC 388
BSNT_03527___ 389 AGGGCAGAATCATGCGGGAGATCGGCGTTTATGCGCGGGTCGGAATCGGC 438
|....|..||.|||....|||.|||..||||.||.||.||.||.|||||.
BPUM_2102___p 389 AAACTACCATTATGAACCAGACCGGTATTTACGCACGTGTTGGCATCGGT 438
BSNT_03527___ 439 CCTAACAAAGCGCTGGCCAAAATTGCGTGTGACAATTTTGCCAAAAAGAA 488
|||||.||||..||.||||||||.||.||||||.|||||||.|||
BPUM_2102___p 439 CCTAATAAAGTACTCGCCAAAATGGCTTGTGACCATTTTGCTAAA----- 483
BSNT_03527___ 489 TAAAAAC------GGTAT-TTTTACCTTAACGAAAGAAAATAT----GAA 527
|||||| ||.|| |.|.|.|||..|| .|||.|.|.| |
BPUM_2102___p 484 -AAAAACTCATCTGGCATCTATGAACTTCGCG-CAGACAGTGTTTCGG-- 529
BSNT_03527___ 528 AACCGAAATGTGGCCGCTCCCGGTGGGCAGCATGTTTGGCGTCGGGAGCC 577
|.||..|.||||||||.|||.|.||.|...|.||||||||.||.|..|
BPUM_2102___p 530 --CTGATTTATGGCCGCTTCCGATTGGAAAATTATTTGGCGTTGGTAAAC 577
BSNT_03527___ 578 GCATGAAGCATCATTTAAATCGAATGGGCATCAGCACGATCGGCGGGCTC 627
|.|||.||||.||||||||.|||||||||||.||.||.|||||...|||.
BPUM_2102___p 578 GAATGGAGCACCATTTAAAACGAATGGGCATTAGTACCATCGGAACGCTT 627
BSNT_03527___ 628 GCGGCTTTTCCGCTCGATC--TTTTAAAAAAGAAATGGGGCATTAACGGC 675
||..|||.||||.|.|||| .||.|||||.| .|||||.||.|||||.
BPUM_2102___p 628 GCTACTTATCCGTTAGATCGGCTTAAAAAACG--CTGGGGAATCAACGGA 675
BSNT_03527___ 676 CACGTGCTGTGGATGACGGCAAAC--------GGAATCGACTATTCCCCT 717
.|..|..|| |.||.||| ||.|| || ||||
BPUM_2102___p 676 GAAATTTTG-------CAGCGAACAGCATTAGGGCAT-GA----TCCC-- 711
BSNT_03527___ 718 GTGTCAACTTC--GTCTCTGGAC-----------GGGCAAAAGGCGATAG 754
|| || |||.|.|.|| |.||||||.|||.|.|
BPUM_2102___p 712 ---TC----TCCGGTCACCGTACACACACATAATGAGCAAAAAGCGGTGG 754
BSNT_03527___ 755 GCCATGGAATGACTCTCCC----GA----GAGACTACGAACACTTTGACA 796
|.|||...||||||||||| || |.|.|| ||||
BPUM_2102___p 755 GACATCATATGACTCTCCCCCATGATTATGCGTCT--------TTTG--- 793
BSNT_03527___ 797 AAGAAATCAAGGTCG-TATTGCTTGAGCTGAGTGAAGAGGT--------G 837
|.||.|||||.|||| |.|| |||||..|.||.|||||.|| |
BPUM_2102___p 794 AGGACATCAAAGTCGCTCTT-CTTGAATTAAGCGAAGAAGTGGCAAGACG 842
BSNT_03527___ 838 TGCAGGC--GAAGCCGAAACGCCGGGGTCATGGGGCAGACAGTGTCAGTG 885
||||.|| .||||...|.| |.||.||.||||||||.||.
BPUM_2102___p 843 TGCACGCTTTAAGCATTATC----------TTGGTCAAACAGTGTCTGTT 882
BSNT_03527___ 886 AGC-TGCCGGGGTGCTGATTTTGATTGGCCGACGGGCTTCAACCGGCAAG 934
.|| || .|.||.|||||||||..|...|||||.||.||..|..|.|||.
BPUM_2102___p 883 GGCGTG-AGAGGCGCTGATTTTTCTCACCCGACTGGATTTCATAGACAAA 931
BSNT_03527___ 935 TGAAGCTGGCAGAGCCGACTAATTC----------TACGCAGGATGTATA 974
|.||||| |.|||| |||| |||...|||
BPUM_2102___p 932 TCAAGCT------------TCATTCACCAACACAGTACG--GGACAGATA 967
BSNT_03527___ 975 T----GAGGCTG---------TACGCCGGCTGTTTCTTACATTTTGGGAC 1011
| |||||.| ||.|||.||.| || .|||||.
BPUM_2102___p 968 TTGCAGAGGCAGCTATTCAGCTATGCCAGCAG-------CA--CTGGGAT 1008
BSNT_03527___ 1012 GGGAAACCTGTCCGCCGTCTCGGTGTCAATCTGTCTCAGCTCTCA-TCTG 1060
||..|.||..|.||..||.|||||.|.|.|||.||.||||| .|| ||||
BPUM_2102___p 1009 GGTCAGCCCATTCGAAGTGTCGGTATTACTCTCTCACAGCT-GCAGTCTG 1057
BSNT_03527___ 1061 A-TGACA-TATGGCAGCTCAATTTATTTCAGGATTATG--CAA----AGA 1102
| .|.|| ||| |||||.|||||||||.|..||.||| ||| |.|
BPUM_2102___p 1058 ACAGCCAGTAT--CAGCTAAATTTATTTGATCATCATGTTCAAAAAGACA 1105
BSNT_03527___ 1103 AAATGAGCCTAGGCTATGTGATG-GA-CGGCATTAAAAATCGA--TTCGG 1148
||.|.|||..|| |||.||||| || |..|||.||..||.|| |.|.|
BPUM_2102___p 1106 AACTCAGCAAAG--TATTTGATGCGATCCACATAAAGTATGGACCTGCTG 1153
BSNT_03527___ 1149 CGACACAGCAATCATCAGGGCGGCGTCACTGAC-AGCGGCAGGCCAGGCA 1197
|....|.||| .||..|||||||||| ||| |||||.||.|||
BPUM_2102___p 1154 CCTTGCTGCA--------TGCTTCGTCACTGACAAGC-GCAGGGCAAGCA 1194
BSNT_03527___ 1198 TTTGAACGCGCGGCTAAAATAGGGGGGCACTATAAATGA 1236
|.|.|.|||||.|..|||||.||.||.||.||.||||.|
BPUM_2102___p 1195 TATCATCGCGCCGAAAAAATTGGCGGACATTACAAATAA 1233
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