Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03518 and BPUM_2097

See Amino acid alignment / Visit BSNT_03518 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:02
# Commandline: needle
#    -asequence dna-align/BSNT_03518___yqkC.1.24716.seq
#    -bsequence dna-align/BPUM_2097___yqkC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03518___yqkC-BPUM_2097___yqkC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03518___yqkC-BPUM_2097___yqkC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03518___yqkC
# 2: BPUM_2097___yqkC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 242
# Identity:     169/242 (69.8%)
# Similarity:   169/242 (69.8%)
# Gaps:           4/242 ( 1.7%)
# Score: 548.0
# 
#
#=======================================

BSNT_03518___      1 GTGGAACAAAAGCTGAAGGCAATGAAGAACACAGCACAAAATAAAACGTG     50
                     |||||.||||||||.||.|..||..|.|||||.|||||||||||.||.||
BPUM_2097___y      1 GTGGATCAAAAGCTAAAAGTGATACAAAACACGGCACAAAATAAGACATG     50

BSNT_03518___     51 GGTATCCTTCCTGAATCAAAACCATCCTTATACCTTGCTTCACTGGTCAA    100
                     |||.||.||..|.|||.|.||.|||||.||||||.|..|.||||||||||
BPUM_2097___y     51 GGTGTCGTTTTTAAATAACAATCATCCCTATACCCTTTTGCACTGGTCAA    100

BSNT_03518___    101 TCGGAGGAGCAGAGTCCATCAAGAAAGATGTCTGGCTATTGCAGGATGAA    150
                     |.||.||....||.||..|.||.||.|||||.|||||..|.|||||||||
BPUM_2097___y    101 TAGGTGGGATGGATTCGGTGAAAAAGGATGTTTGGCTTCTTCAGGATGAA    150

BSNT_03518___    151 ATGACCTTCGAGACGCAGGAGTTTACAACGATAGATCTTGCGATTGAATG    200
                     .|.||.||.||.|||.|.||.|||.|||||.|.||..|.||..|..|.||
BPUM_2097___y    151 GTCACATTTGAAACGGAAGAATTTCCAACGCTCGAATTAGCTGTCAATTG    200

BSNT_03518___    201 GATCAGAGAAAATATGGATGGCA--TTACCGACGTTCTGTAA    240
                     |||.|.|||.||||||||  .||  |.||.||.||..|.|||
BPUM_2097___y    201 GATTAAAGAGAATATGGA--ACAGGTAACAGATGTATTATAA    240


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