Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03510 and BPUM_2089
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:02
# Commandline: needle
# -asequence dna-align/BSNT_03510.1.24716.seq
# -bsequence dna-align/BPUM_2089___yqxK.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03510-BPUM_2089___yqxK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03510-BPUM_2089___yqxK.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03510
# 2: BPUM_2089___yqxK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1300
# Identity: 781/1300 (60.1%)
# Similarity: 781/1300 (60.1%)
# Gaps: 254/1300 (19.5%)
# Score: 2115.0
#
#
#=======================================
BSNT_03510 1 ATGAAAAAGATTTACGCGGATTTGCACATTCATATCGGCCGGACCTTTAC 50
||||...||.|||..||.||..|.||.||||||||.|||.|.||....||
BPUM_2089___y 1 ATGAGGGAGTTTTTTGCAGACATCCATATTCATATTGGCAGAACAAGAAC 50
BSNT_03510 51 AGGAAGGGCTGTCAAAATAACAGGCGCCAAAACATTAACGCTGGACAGAA 100
|||.||.|||||.|||||.|||||.||.|...||.|.||..|.|||..||
BPUM_2089___y 51 AGGCAGAGCTGTTAAAATTACAGGTGCAAGGTCACTGACCATTGACCAAA 100
BSNT_03510 101 TTTTGGTTGAAGCCAGTGAACATAAAGGAAT-----TGAACTCCTCGGCA 145
||.|..|||||||.|...||..||||||.|| ||| |.||..
BPUM_2089___y 101 TTCTCATTGAAGCAACGCAAAGTAAAGGGATGGGGATGA-----TAGGTG 145
BSNT_03510 146 TTATCGACTG-TCATTCTCCGGAAGTC--------ATT-----CTGGAGC 181
|.||.|| || .||.|||||.|||||| ||| ..||.|
BPUM_2089___y 146 TGATTGA-TGCACAATCTCCAGAAGTCCTAGAAGAATTAATAGAAGGTG- 193
BSNT_03510 182 TTGAGGAAGGCATTTCATCTGGAAAATATCGCGAGCT---TGACGGGGGA 228
|.||||||||| ||||||...||.|| |||.||.||
BPUM_2089___y 194 TAGAGGAAGGC------------AAATATACTGAACTAAGTGATGGTGG- 230
BSNT_03510 229 GGAATCCGTTATC------GCAGCACG-ACT-CTTTTATTGGGGAGCGAG 270
|| |||| .|||..|| .|| |||||| ||.||.||.
BPUM_2089___y 231 ----TC---TATCATTTGAACAGACCGTGCTGCTTTTA---GGCAGTGAA 270
BSNT_03510 271 CTGGAGATTTATGATGAAGC-TTGTAGCGGACCGATCCATGTGCTCGTAT 319
.|.||.|||.||||| ||.| ||..|..||.||.||.||||||||.|.||
BPUM_2089___y 271 TTAGAAATTAATGAT-AATCATTCAAAAGGTCCAATTCATGTGCTTGCAT 319
BSNT_03510 320 TTATGCCGACGTTG-GCTGATATGAAACAGTTTTCAAACTGGCTGTCAGC 368
|||||||.|||.|| || .|.||||...|||||||....|||||
BPUM_2089___y 320 TTATGCCCACGCTGCGC-AAAATGACTGAGTTTTCCGCATGGCT------ 362
BSNT_03510 369 CCG-GC------TGAAAAATATTCATTTAAGCTCGCAGCGGATTTATG-A 410
|| || ||||||||.|.|||||.||.||.|||||..|.|||| .
BPUM_2089___y 363 -CGCGCTTCATATGAAAAATGTGCATTTGAGTTCACAGCGCCTCTATGTG 411
BSNT_03510 411 AACGGGCTTAAAC-CTGCAAAAAAAAGTGCAGGATATGGGCGGCTTGTTT 459
.|.||| .|||| ||.||..|.||.||..||||..|.||.|||||.|||
BPUM_2089___y 412 GATGGG--AAAACACTTCAGCATAAGGTCAAGGAGCTAGGAGGCTTATTT 459
BSNT_03510 460 ATCCCCGCCCATATCTTTACGCCGCATAAAAGCTTATATGGAAAAGGGGT 509
||.||.||.|||||.||.|||||||||||||||||||.|||.|||||.||
BPUM_2089___y 460 ATTCCTGCTCATATTTTCACGCCGCATAAAAGCTTATTTGGCAAAGGAGT 509
BSNT_03510 510 TAAATCAAGC------TTAACTGAGGTTTTTGATCC--ATCTATGATAGA 551
.||| |||||.||.||.||.||||| ||| |.||.||
BPUM_2089___y 510 ------CAGCACGTCATTAACGGAAGTGTTCGATCCGGATC--TCATTGA 551
BSNT_03510 552 CGCGGTGGAGCTTGGATTAAGCTGTGATACAGAC-ATGGCATCACACGT- 599
.||.||.||.||.|||.|.|||||.||||| |.| |||||.||.|| ||
BPUM_2089___y 552 TGCTGTTGAACTAGGACTTAGCTGCGATAC-GTCAATGGCGTCTCA-GTT 599
BSNT_03510 600 -ATCGCAATTGAATCCGTATCCTTTTTTAACAAATTCTGATGCGCATTCG 648
|.|| ||.||||||..|||||.||||||||.|||||.||.||.|||||.
BPUM_2089___y 600 AAGCG-AACTGAATCGCTATCCCTTTTTAACGAATTCAGACGCCCATTCT 648
BSNT_03510 649 TTGGGGAAAATCG-GCAGAGAATATA-----------ATGAACTATATGT 686
||.|||||||||| || ||||||||| |||.||.||
BPUM_2089___y 649 TTAGGGAAAATCGCGC-GAGAATATACAAAAATCCGCATGGACCAT---- 693
BSNT_03510 687 GCAGTCAGCTGATTTTACTGAAT------TTGCTCTTGCATTAAAGGGAC 730
||...||||.|.|||| |.||.|||| ||||||
BPUM_2089___y 694 -------GCCTCTTTTGCCGAATTCAAACTAGCCCTTG-----AAGGGA- 730
BSNT_03510 731 AAGATGACAGGAAA---ATTATCGCAAATTATGGCTTGGACCCG----TT 773
||||.| |||.| ||||..|.|||||||||..|.|.|||| ||
BPUM_2089___y 731 AAGAGG---GGAGAGCCATTACAGGAAATTATGGACTCGCCCCGCGGCTT 777
BSNT_03510 774 ATTGGGGAAATATTATCAGACCGCTTGCGAAGCGTGCGGAGAGCCTGCTG 823
|||||.||.|||||.||..|.|||||...||||||| |
BPUM_2089___y 778 ----GGGAAGTACTATCATACAACCTGCGAGAAGTGCGGA---------G 814
BSNT_03510 824 TAAGCGGGGAAACAGCGTGCGC--------GAA-----------TTGCGG 854
|||| ||..||.|||| ||| .|||||
BPUM_2089___y 815 TAAG-------ACCTCGCGCGCTAGATCAAGAAAAGTGCCATGCATGCGG 857
BSNT_03510 855 AAATGCCAGATTTACCAAGGGAGTCAGCGAAAGATTGCGT------GAAT 898
|.||.||.|..|.||.||.|||||.||.|| |||| |||.
BPUM_2089___y 858 ACATACCCGGATGACAAAAGGAGTGAGTGA------GCGTTTAAAGGAAC 901
BSNT_03510 899 TGAGTGATC-AGCTTGAAGTTCGCGTCC------CGCGTCCGCGATATGT 941
||..||||| || .|||| |.|| |..|.||.|..|||||
BPUM_2089___y 902 TGGCTGATCAAG---AAAGT----GACCATGGAACAAGACCTCCTTATGT 944
BSNT_03510 942 ACATCAGATCCCGCTGCAATTTGTTCCGGGTGTAGGCCCGAAAACGCTGG 991
.||||||.|.|||||.||||||.||||||||||.||..|.||||||||||
BPUM_2089___y 945 TCATCAGCTTCCGCTTCAATTTATTCCGGGTGTCGGAGCCAAAACGCTGG 994
BSNT_03510 992 ACAAACTAAAAAAAGC----CTTCGCAACAGAAATGGCTGTTCTTCATGA 1037
|.||.|| |||||| .|||.| |||||.|||..|.|.||||||.|
BPUM_2089___y 995 AGAAGCT---AAAAGCGGTGTTTCAC-ACAGAGATGAATATCCTTCATCA 1040
BSNT_03510 1038 GGCTGCAGAAGAAGATTT---GGCTCGCGTTGTCCCGCC---GAAAACCG 1081
.||..|||||.||||..| .|| |||.|.||| .|||||.|
BPUM_2089___y 1041 AGCAACAGAACAAGAACTAAAAGC------TGTGCTGCCAGAAAAAACAG 1084
BSNT_03510 1082 CGGCGCTT--ATCGTAAAAGCGAGATCCGGAAAACTGGAATTGAAAGCCG 1129
| |..|| |||.|.|||||.|||...||..||.|.|||.|||..||.|
BPUM_2089___y 1085 C--CAATTACATCATCAAAGCAAGAAAAGGTGAAGTCGAACTGATCGCTG 1132
BSNT_03510 1130 GAGGAGGAGGAACCTACGGTAA-----AATTAAACCGTGA---------- 1164
|.||.||.||....|||||||| |..|.||.|.|||
BPUM_2089___y 1133 GCGGGGGCGGCGTGTACGGTAAGGTGGATATCAATCATGAATCAAGTTAA 1182
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