Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03496 and BPUM_2081
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:01
# Commandline: needle
# -asequence dna-align/BSNT_03496___drm.1.24716.seq
# -bsequence dna-align/BPUM_2081___drm.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03496___drm-BPUM_2081___drm.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03496___drm-BPUM_2081___drm.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03496___drm
# 2: BPUM_2081___drm
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1215
# Identity: 880/1215 (72.4%)
# Similarity: 880/1215 (72.4%)
# Gaps: 60/1215 ( 4.9%)
# Score: 3099.0
#
#
#=======================================
BSNT_03496___ 1 ATGCCTGCATACAAATATAATCGTGTGTTTTTAATTGTGATGGACTCAGT 50
|||||||..||..|.|||||.||..|.||..|..|.||.|||||.|||||
BPUM_2081___d 1 ATGCCTGATTATCAGTATAAACGCATTTTCCTCGTCGTAATGGATTCAGT 50
BSNT_03496___ 51 CGGAATCGGCGAAGCGCCGGATGCCGCTGACTTTAATGATGAAGGCGCTC 100
.|||||.||.|||||.||.|||||.|||||.||||||||||.|||.||..
BPUM_2081___d 51 AGGAATTGGGGAAGCACCTGATGCTGCTGAATTTAATGATGTAGGTGCAG 100
BSNT_03496___ 101 ATACGCTCGGTCATATTGCCGAGCATATGAGCGGATTACATATGCCGAAT 150
||||.||.||.||||||||.||..|.||||.|||..|.||.|||||.|||
BPUM_2081___d 101 ATACACTAGGACATATTGCTGAAAAAATGAACGGGCTTCACATGCCAAAT 150
BSNT_03496___ 151 ATGGCAAAGCTCGGCCTTGGTCTTATCGAAGATATCAAAGG--------- 191
|||||.|||||.||.||..|||.|||..||||.||||||||
BPUM_2081___d 151 ATGGCGAAGCTTGGGCTGAGTCATATTAAAGAAATCAAAGGAATTCCAGC 200
BSNT_03496___ 192 ---TGTAGAAAAAACAGAACATCCGCTTGCCTACTATGGAAAAATACAAG 238
|| ||||| ||||||||.||.|||||||||||.||.|
BPUM_2081___d 201 GGATG-AGAAA-----------CCGCTTGCGTATTATGGAAAAATGCAGG 238
BSNT_03496___ 239 AAGCGTCAAACGGAAAAGATACGATGACCGGCCATTGGGAGATTATGGGT 288
||||.|||||.||.||||||||.|||||.||.||.|||||.||.||||||
BPUM_2081___d 239 AAGCATCAAATGGTAAAGATACAATGACAGGTCACTGGGAAATCATGGGT 288
BSNT_03496___ 289 TTATACATTGATAAACCATTTAAAGTGTTCCCGGAAGGCTTTCCTGATGA 338
.|.|||||.||.|.|||.||.|.|||.|||||.||.||.||.||.|||||
BPUM_2081___d 289 CTTTACATAGACACACCGTTCAGAGTTTTCCCAGACGGATTCCCAGATGA 338
BSNT_03496___ 339 ATTGCTTCAA--GAGCTGGAAAAG--AGATCTGGCCGCAAAATTATTGGA 384
|.| ||.|| ||.|| ||||| |.|.|.|||.|....|||||.|||
BPUM_2081___d 339 ACT--TTTAAATGAACT--AAAAGAAAAAACAGGCAGAGGCATTATAGGA 384
BSNT_03496___ 385 AACAAGCCGGCTTCCGGCACAGCGATTTTGGATGAGCTTGGTCAGGAGCA 434
||.||.||.||.||.||.||.|..||.||.||.||||||||..|.|||||
BPUM_2081___d 385 AATAAACCTGCGTCTGGTACTGAAATCTTAGACGAGCTTGGCGAAGAGCA 434
BSNT_03496___ 435 CATGGAGACAGGGGCTTTAATTGTTTACACGTCTGCTGACTCTGTTCTGC 484
.|||.|.|||||.|.|.||||.||||||||.|||||.||.|||||.||||
BPUM_2081___d 435 TATGAAAACAGGCGATCTAATCGTTTACACATCTGCGGATTCTGTGCTGC 484
BSNT_03496___ 485 AAATTGCCGCTCACGAAGAGGTTGTGCCGCTTGAGGAGCTGTATCGCATT 534
|||||||.||.||||||||.||.|||||..|.||.||.||.|||||.|||
BPUM_2081___d 485 AAATTGCTGCGCACGAAGAAGTGGTGCCATTAGATGAACTTTATCGTATT 534
BSNT_03496___ 535 TGCGAAACGGCGAGAGAGCTGACGCTTGATCCGAAATATATGGTTGGCCG 584
||.||||..||..|.|||||.||..|.|||...|||||.||||||||.||
BPUM_2081___d 535 TGTGAAATTGCACGTGAGCTCACATTAGATGAAAAATACATGGTTGGGCG 584
BSNT_03496___ 585 CATTATTGCACGGCCGTTCGTCGGAGAGCCGGGTCAAT---TCAAACGGA 631
||||||.||.||.||.||.|||||.|||||.||...|| ||| |.|
BPUM_2081___d 585 CATTATCGCTCGTCCCTTTGTCGGGGAGCCTGGCGCATTTGTCA---GAA 631
BSNT_03496___ 632 CGCCAAACCGCCATGACTATGCCCTTAAACCGTTTGATCGCACTGTCATG 681
|.||||||||.|||||||||||..|.|||||.||||||||.||.||.|||
BPUM_2081___d 632 CACCAAACCGTCATGACTATGCTTTAAAACCATTTGATCGTACAGTGATG 681
BSNT_03496___ 682 AATGAATTGAAAGA-CAGCGGCTTAGATGTGATTTCAATCGGTAAAATCT 730
|||||..||||||| .|..||| |.|||||||||.|.|||||.|||||||
BPUM_2081___d 682 AATGAGCTGAAAGATGATGGGC-TCGATGTGATTGCGATCGGCAAAATCT 730
BSNT_03496___ 731 CTGATATTTACGACGGAGAAGGCATTACTTCTTCACGCAGAACGGTTTCT 780
||||||||||.||.||.|||||.||.||.|||||.|.||||||....||.
BPUM_2081___d 731 CTGATATTTATGATGGCGAAGGAATCACCTCTTCTCTCAGAACAAAATCG 780
BSNT_03496___ 781 AATATGGACGGAATGGACAAGGTGATCGATACGCTGGGAGAAGACTTTAC 830
||.||||||||||||||||||.||.||||.||.||...|..|||||||||
BPUM_2081___d 781 AACATGGACGGAATGGACAAGCTGGTCGACACACTTAAAACAGACTTTAC 830
BSNT_03496___ 831 GGGTCTGAGCTTTGCGAACCTTGTTGATTTTGACGCGTTATTCGGACACC 880
.||..|.||||||...||||||||||||||||||||..|.|.||||||..
BPUM_2081___d 831 AGGAATTAGCTTTTTAAACCTTGTTGATTTTGACGCTCTTTACGGACATA 880
BSNT_03496___ 881 GCCGTGACCCTGAAGGCTACGGACGCGCGCTTGAAGAATTTGATGCGCGG 930
|..|.||.||.||.||.||||||...||.||.||.||||||||.||.||.
BPUM_2081___d 881 GAAGAGATCCAGAGGGTTACGGAAAAGCACTAGAGGAATTTGACGCCCGT 930
BSNT_03496___ 931 CTTCCGGAAGTGTTTGA------AAAAATGAGAGAAGACGATCTGTTAAT 974
|||||.||||||||||| ||| ||||||.|||||..|..|
BPUM_2081___d 931 CTTCCTGAAGTGTTTGACCTGTTAAA------AGAAGATGATCTTCTTGT 974
BSNT_03496___ 975 TATTACAGCCGACCACGGCAATGATCCGATTCATCATGGGACTGACCATA 1024
.||.|||||.||.||.||.|||||.||..|||||||.||.||.||.||||
BPUM_2081___d 975 GATCACAGCAGATCATGGAAATGACCCTGTTCATCACGGAACAGATCATA 1024
BSNT_03496___ 1025 CACGCGAGTATGTGCCGATTCTCGCTTACAGCAAAAAACAT-AAGAAAGC 1073
||.|.||.|||||.|||.|..|.||||||||||||||.||| ||| |.
BPUM_2081___d 1025 CAAGAGAATATGTTCCGCTCATTGCTTACAGCAAAAAGCATCAAG---GA 1071
BSNT_03496___ 1074 GCAAATG--CTGCC-GCTTGCAGATACATTTGCCGATATTGGCGCAACGA 1120
||||||| ||||| .|.| ||.|.||.|||||.|||.||||.||||||.
BPUM_2081___d 1072 GCAAATGAACTGCCAACGT-CAAAAACCTTTGCTGATCTTGGAGCAACGG 1120
BSNT_03496___ 1121 TCGCTGATAATTTCCAAACAAATAAACCGAAATACGGGAAAAGCTTTTTA 1170
||||.||.||||||.|.||||..|..||.||||||||.|.||||||||||
BPUM_2081___d 1121 TCGCAGACAATTTCAAGACAACGATGCCAAAATACGGCACAAGCTTTTTA 1170
BSNT_03496___ 1171 TCTTTATTACAATAG 1185
|||..|.|..|||||
BPUM_2081___d 1171 TCTAAACTCAAATAG 1185
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