Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03492 and BPUM_2079
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:01
# Commandline: needle
# -asequence dna-align/BSNT_03492___dacF.1.24716.seq
# -bsequence dna-align/BPUM_2079___dacF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03492___dacF-BPUM_2079___dacF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03492___dacF-BPUM_2079___dacF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03492___dacF
# 2: BPUM_2079___dacF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1232
# Identity: 877/1232 (71.2%)
# Similarity: 877/1232 (71.2%)
# Gaps: 91/1232 ( 7.4%)
# Score: 3063.0
#
#
#=======================================
BSNT_03492___ 1 ---------------ATGAAACGTCTTTTATCCACTTTGTTGA-TTGGTA 34
.|||||||||.|.|||...|.|||||.| ||
BPUM_2079___d 1 ATGGAGGTCTGCCACTTGAAACGTCATATATGTGCATTGTTTACTT---- 46
BSNT_03492___ 35 TAATGCTGCTTA---CA----TTTGCACCGTCTGC-AT------------ 64
|||||.|.|||| || ||| ||||.||.|| ||
BPUM_2079___d 47 TAATGATCCTTATCTCAATGGTTT-CACCATCAGCGATAGCAAAAGAAAA 95
BSNT_03492___ 65 --TTGCAAAACAAGACGGAAAACGTACATCGGAGCTTGCTCATGAAGCGA 112
|||.|||||.|||.|.|||||..|||||.||..|.||.||.|||||.|
BPUM_2079___d 96 GATTGAAAAACCAGAAGAAAAACAAACATCAGAATTGGCACACGAAGCCA 145
BSNT_03492___ 113 AGTCTGCGGTGCTGATAGAACGTGACACAGGAAAAGTGCTTTACAACAAG 162
|.||.||..|..|.||||||||||||||.||||||||||||||||||||.
BPUM_2079___d 146 AATCAGCCATCTTAATAGAACGTGACACGGGAAAAGTGCTTTACAACAAA 195
BSNT_03492___ 163 AACAGCAATGAGAGACTGGCGCCTGCAAGCATGACGAAAATTATGACGAT 212
|||||..||||.|..|||||.||.|||||.|||||.|||||.||||||||
BPUM_2079___d 196 AACAGTGATGAAAAGCTGGCACCCGCAAGTATGACCAAAATCATGACGAT 245
BSNT_03492___ 213 GCTTTTGATTATGGAAGCTTTAGATAAAGGCAAAATCAAAATGAGTGATA 262
||||.|.||.||||||||..|.|||.||||.|||.|.|||||||.|||.|
BPUM_2079___d 246 GCTTCTCATCATGGAAGCGATTGATCAAGGAAAACTAAAAATGACTGACA 295
BSNT_03492___ 263 AAGTCCGTACAAGCGAGCATGCGGCGTCAATGGGCGGCTCACAGATATTC 312
|.||..|.|||||.||.|||||.||.||||||||.||.||||||||.|||
BPUM_2079___d 296 AGGTAAGAACAAGTGACCATGCAGCTTCAATGGGAGGGTCACAGATCTTC 345
BSNT_03492___ 313 CTTGAGCCCGGCGAAGAAATGACTGTCAAAGAAATGCTGAAAGGCATCGC 362
|||||.||.||.|||||||||||.||.||||||||||||||||||||.||
BPUM_2079___d 346 CTTGAACCTGGAGAAGAAATGACCGTGAAAGAAATGCTGAAAGGCATTGC 395
BSNT_03492___ 363 AATCGCTTCGGGAAATGACGCTTCCGTCGCCATGGCTGAATTTATTTCCG 412
.||.||.||.||||||||.|||||.||.||||||||.||...||||.|.|
BPUM_2079___d 396 GATTGCGTCTGGAAATGATGCTTCAGTTGCCATGGCAGAGCATATTGCAG 445
BSNT_03492___ 413 GCTCTGAAGAAGAATTTGTGAAGAAAATGAATAAAAAAGCAAAAGAGCTG 462
|.|||||||||.|.|||||..||.|||||||.||.||.||||||||.||.
BPUM_2079___d 446 GATCTGAAGAACAGTTTGTAGAGCAAATGAACAAGAAGGCAAAAGAACTT 495
BSNT_03492___ 463 GGATTGAAAAATACATCCTTTAAAAACCCAACAGGACTGACCGAGGAAGG 512
||..|.|....||||..||||.||||||||||||||||..|.||..|||.
BPUM_2079___d 496 GGCCTCACCTCTACAGTCTTTCAAAACCCAACAGGACTTCCTGAAAAAGA 545
BSNT_03492___ 513 ACACTACAGCTCTGCTTATGACATGGCAATCATGGCTAAGGAATTATTGA 562
.||.||.||..|.|||.||||.|||||.|..|||||.||.||.||.||||
BPUM_2079___d 546 CCATTATAGTACAGCTCATGATATGGCTAAAATGGCAAAAGAGTTGTTGA 595
BSNT_03492___ 563 AATACGAATCAATTACGAAGTTTACCGGCACGTATGAAGATTATCTGCGT 612
||||.|||..|||.||.||.|||||.||....||.|||||.||.||.|||
BPUM_2079___d 596 AATATGAACAAATCACCAAATTTACAGGTGTCTACGAAGACTACCTCCGT 645
BSNT_03492___ 613 GAAAATACAGATAAAAAGTTTTGGCTTGTAAATACAAATCGCCTTATCAA 662
.||||.||.||||||||.||.||||||||.||||||||.||..|.||.||
BPUM_2079___d 646 CAAAACACCGATAAAAAATTCTGGCTTGTGAATACAAACCGATTGATTAA 695
BSNT_03492___ 663 ATTTTATCCTGGTGTAGACGGCGTAAAAACAGGCTATACAGGCGAAGCGA 712
|||||||||.|||||.||.||..|.||||||||.|.||||||||||||.|
BPUM_2079___d 696 ATTTTATCCAGGTGTCGATGGGTTGAAAACAGGTTTTACAGGCGAAGCCA 745
BSNT_03492___ 713 AATATTGTCTGACTGCTTCGGCTAAAAAAGGAAACATGCGGGCCATAGCG 762
||||.|||.|||||||.||.||||||||||||||||||||.|.|||.||.
BPUM_2079___d 746 AATACTGTTTGACTGCATCCGCTAAAAAAGGAAACATGCGCGTCATTGCA 795
BSNT_03492___ 763 GTTGTATTCGGAGCGAGCACGCCTAAAGAAAGAAACGCGCAAGTGACAAA 812
|||||.|||||.||.||.||.||.|||||.||||||||.||||||...||
BPUM_2079___d 796 GTTGTCTTCGGCGCAAGTACACCGAAAGATAGAAACGCCCAAGTGGTCAA 845
BSNT_03492___ 813 AATGCTTGACTTCGCCTTTAGCCAATATGAAACGCATCCTTTATATAAAC 862
||||.|.||||.|||.|||||.|||||....||.||.||..|.||.||||
BPUM_2079___d 846 AATGTTAGACTACGCATTTAGTCAATACACCACACACCCGCTTTACAAAC 895
BSNT_03492___ 863 GAAATCAAACAGTAGCAAAAGTAAAGGTCAAAAAAGGG--AAACAAAAAT 910
||...|||...|||||..||.|.|||||.|..|||||| |||.|||||
BPUM_2079___d 896 GAGGACAAGATGTAGCGGAAATCAAGGTAAGCAAAGGGACAAAGAAAAA- 944
BSNT_03492___ 911 TGATCGAACTCA-CT----ACATCTGAGCCGATTTCAATATTGACGAAAA 955
||.||| || ||.|||||.||.||.||..|.||.|||||||
BPUM_2079___d 945 ------AATTCAGCTTGTCACCTCTGAACCAATCTCCCTTTTAACGAAAA 988
BSNT_03492___ 956 AAGGCGAGGATATGAACGATGTGAAAAAAGAAATCAAGATG---AAGGAC 1002
|||||||..||.||.|..|..|.||||||||||||||..|| .|||
BPUM_2079___d 989 AAGGCGAAAATGTGGATCAGATTAAAAAAGAAATCAAATTGTCTCAGG-- 1036
BSNT_03492___ 1003 AATATTAGTGCTCCGATTC-AAAAAGGCCAA--GAGCTTGGCACTCTTGT 1049
||.|||..|| ||.|||| .|||||| || ||.|||||.||..||||
BPUM_2079___d 1037 -ATGTTACGGC-CCCATTCTCAAAAGG--AACGGAACTTGGAACCATTGT 1082
BSNT_03492___ 1050 TCTGAAAAAGGATGGAGAAGTACTCGC-TGAAAGTCCTGTTGCTGCAAAA 1098
..|||||||.||.|||.||||.|| || ||||||.|||||....||.|||
BPUM_2079___d 1083 CTTGAAAAAAGACGGAAAAGTGCT-GCATGAAAGCCCTGTACAGGCCAAA 1131
BSNT_03492___ 1099 GAAGATATGAAGAAAGCCGG-GTTTATCACATTCTTAAAGCGGACGATGG 1147
||||..|||.|.|||||||| |||| ..||||||||.||.||..||||||
BPUM_2079___d 1132 GAAGGAATGGAAAAAGCCGGCGTTT-GGACATTCTTTAAACGAGCGATGG 1180
BSNT_03492___ 1148 GAGACTGGACAAAATTT---------AAGTAA 1170
||| ||||| ||.|||
BPUM_2079___d 1181 ----CTG-----AATTTGTGAAATGGAAATAA 1203
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