Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03492 and BPUM_2079

See Amino acid alignment / Visit BSNT_03492 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:01
# Commandline: needle
#    -asequence dna-align/BSNT_03492___dacF.1.24716.seq
#    -bsequence dna-align/BPUM_2079___dacF.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03492___dacF-BPUM_2079___dacF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03492___dacF-BPUM_2079___dacF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03492___dacF
# 2: BPUM_2079___dacF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1232
# Identity:     877/1232 (71.2%)
# Similarity:   877/1232 (71.2%)
# Gaps:          91/1232 ( 7.4%)
# Score: 3063.0
# 
#
#=======================================

BSNT_03492___      1 ---------------ATGAAACGTCTTTTATCCACTTTGTTGA-TTGGTA     34
                                    .|||||||||.|.|||...|.|||||.| ||    
BPUM_2079___d      1 ATGGAGGTCTGCCACTTGAAACGTCATATATGTGCATTGTTTACTT----     46

BSNT_03492___     35 TAATGCTGCTTA---CA----TTTGCACCGTCTGC-AT------------     64
                     |||||.|.||||   ||    ||| ||||.||.|| ||            
BPUM_2079___d     47 TAATGATCCTTATCTCAATGGTTT-CACCATCAGCGATAGCAAAAGAAAA     95

BSNT_03492___     65 --TTGCAAAACAAGACGGAAAACGTACATCGGAGCTTGCTCATGAAGCGA    112
                       |||.|||||.|||.|.|||||..|||||.||..|.||.||.|||||.|
BPUM_2079___d     96 GATTGAAAAACCAGAAGAAAAACAAACATCAGAATTGGCACACGAAGCCA    145

BSNT_03492___    113 AGTCTGCGGTGCTGATAGAACGTGACACAGGAAAAGTGCTTTACAACAAG    162
                     |.||.||..|..|.||||||||||||||.||||||||||||||||||||.
BPUM_2079___d    146 AATCAGCCATCTTAATAGAACGTGACACGGGAAAAGTGCTTTACAACAAA    195

BSNT_03492___    163 AACAGCAATGAGAGACTGGCGCCTGCAAGCATGACGAAAATTATGACGAT    212
                     |||||..||||.|..|||||.||.|||||.|||||.|||||.||||||||
BPUM_2079___d    196 AACAGTGATGAAAAGCTGGCACCCGCAAGTATGACCAAAATCATGACGAT    245

BSNT_03492___    213 GCTTTTGATTATGGAAGCTTTAGATAAAGGCAAAATCAAAATGAGTGATA    262
                     ||||.|.||.||||||||..|.|||.||||.|||.|.|||||||.|||.|
BPUM_2079___d    246 GCTTCTCATCATGGAAGCGATTGATCAAGGAAAACTAAAAATGACTGACA    295

BSNT_03492___    263 AAGTCCGTACAAGCGAGCATGCGGCGTCAATGGGCGGCTCACAGATATTC    312
                     |.||..|.|||||.||.|||||.||.||||||||.||.||||||||.|||
BPUM_2079___d    296 AGGTAAGAACAAGTGACCATGCAGCTTCAATGGGAGGGTCACAGATCTTC    345

BSNT_03492___    313 CTTGAGCCCGGCGAAGAAATGACTGTCAAAGAAATGCTGAAAGGCATCGC    362
                     |||||.||.||.|||||||||||.||.||||||||||||||||||||.||
BPUM_2079___d    346 CTTGAACCTGGAGAAGAAATGACCGTGAAAGAAATGCTGAAAGGCATTGC    395

BSNT_03492___    363 AATCGCTTCGGGAAATGACGCTTCCGTCGCCATGGCTGAATTTATTTCCG    412
                     .||.||.||.||||||||.|||||.||.||||||||.||...||||.|.|
BPUM_2079___d    396 GATTGCGTCTGGAAATGATGCTTCAGTTGCCATGGCAGAGCATATTGCAG    445

BSNT_03492___    413 GCTCTGAAGAAGAATTTGTGAAGAAAATGAATAAAAAAGCAAAAGAGCTG    462
                     |.|||||||||.|.|||||..||.|||||||.||.||.||||||||.||.
BPUM_2079___d    446 GATCTGAAGAACAGTTTGTAGAGCAAATGAACAAGAAGGCAAAAGAACTT    495

BSNT_03492___    463 GGATTGAAAAATACATCCTTTAAAAACCCAACAGGACTGACCGAGGAAGG    512
                     ||..|.|....||||..||||.||||||||||||||||..|.||..|||.
BPUM_2079___d    496 GGCCTCACCTCTACAGTCTTTCAAAACCCAACAGGACTTCCTGAAAAAGA    545

BSNT_03492___    513 ACACTACAGCTCTGCTTATGACATGGCAATCATGGCTAAGGAATTATTGA    562
                     .||.||.||..|.|||.||||.|||||.|..|||||.||.||.||.||||
BPUM_2079___d    546 CCATTATAGTACAGCTCATGATATGGCTAAAATGGCAAAAGAGTTGTTGA    595

BSNT_03492___    563 AATACGAATCAATTACGAAGTTTACCGGCACGTATGAAGATTATCTGCGT    612
                     ||||.|||..|||.||.||.|||||.||....||.|||||.||.||.|||
BPUM_2079___d    596 AATATGAACAAATCACCAAATTTACAGGTGTCTACGAAGACTACCTCCGT    645

BSNT_03492___    613 GAAAATACAGATAAAAAGTTTTGGCTTGTAAATACAAATCGCCTTATCAA    662
                     .||||.||.||||||||.||.||||||||.||||||||.||..|.||.||
BPUM_2079___d    646 CAAAACACCGATAAAAAATTCTGGCTTGTGAATACAAACCGATTGATTAA    695

BSNT_03492___    663 ATTTTATCCTGGTGTAGACGGCGTAAAAACAGGCTATACAGGCGAAGCGA    712
                     |||||||||.|||||.||.||..|.||||||||.|.||||||||||||.|
BPUM_2079___d    696 ATTTTATCCAGGTGTCGATGGGTTGAAAACAGGTTTTACAGGCGAAGCCA    745

BSNT_03492___    713 AATATTGTCTGACTGCTTCGGCTAAAAAAGGAAACATGCGGGCCATAGCG    762
                     ||||.|||.|||||||.||.||||||||||||||||||||.|.|||.||.
BPUM_2079___d    746 AATACTGTTTGACTGCATCCGCTAAAAAAGGAAACATGCGCGTCATTGCA    795

BSNT_03492___    763 GTTGTATTCGGAGCGAGCACGCCTAAAGAAAGAAACGCGCAAGTGACAAA    812
                     |||||.|||||.||.||.||.||.|||||.||||||||.||||||...||
BPUM_2079___d    796 GTTGTCTTCGGCGCAAGTACACCGAAAGATAGAAACGCCCAAGTGGTCAA    845

BSNT_03492___    813 AATGCTTGACTTCGCCTTTAGCCAATATGAAACGCATCCTTTATATAAAC    862
                     ||||.|.||||.|||.|||||.|||||....||.||.||..|.||.||||
BPUM_2079___d    846 AATGTTAGACTACGCATTTAGTCAATACACCACACACCCGCTTTACAAAC    895

BSNT_03492___    863 GAAATCAAACAGTAGCAAAAGTAAAGGTCAAAAAAGGG--AAACAAAAAT    910
                     ||...|||...|||||..||.|.|||||.|..||||||  |||.||||| 
BPUM_2079___d    896 GAGGACAAGATGTAGCGGAAATCAAGGTAAGCAAAGGGACAAAGAAAAA-    944

BSNT_03492___    911 TGATCGAACTCA-CT----ACATCTGAGCCGATTTCAATATTGACGAAAA    955
                           ||.||| ||    ||.|||||.||.||.||..|.||.|||||||
BPUM_2079___d    945 ------AATTCAGCTTGTCACCTCTGAACCAATCTCCCTTTTAACGAAAA    988

BSNT_03492___    956 AAGGCGAGGATATGAACGATGTGAAAAAAGAAATCAAGATG---AAGGAC   1002
                     |||||||..||.||.|..|..|.||||||||||||||..||   .|||  
BPUM_2079___d    989 AAGGCGAAAATGTGGATCAGATTAAAAAAGAAATCAAATTGTCTCAGG--   1036

BSNT_03492___   1003 AATATTAGTGCTCCGATTC-AAAAAGGCCAA--GAGCTTGGCACTCTTGT   1049
                      ||.|||..|| ||.|||| .||||||  ||  ||.|||||.||..||||
BPUM_2079___d   1037 -ATGTTACGGC-CCCATTCTCAAAAGG--AACGGAACTTGGAACCATTGT   1082

BSNT_03492___   1050 TCTGAAAAAGGATGGAGAAGTACTCGC-TGAAAGTCCTGTTGCTGCAAAA   1098
                     ..|||||||.||.|||.||||.|| || ||||||.|||||....||.|||
BPUM_2079___d   1083 CTTGAAAAAAGACGGAAAAGTGCT-GCATGAAAGCCCTGTACAGGCCAAA   1131

BSNT_03492___   1099 GAAGATATGAAGAAAGCCGG-GTTTATCACATTCTTAAAGCGGACGATGG   1147
                     ||||..|||.|.|||||||| |||| ..||||||||.||.||..||||||
BPUM_2079___d   1132 GAAGGAATGGAAAAAGCCGGCGTTT-GGACATTCTTTAAACGAGCGATGG   1180

BSNT_03492___   1148 GAGACTGGACAAAATTT---------AAGTAA   1170
                         |||     |||||         ||.|||
BPUM_2079___d   1181 ----CTG-----AATTTGTGAAATGGAAATAA   1203


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