Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03479 and BPUM_2068
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:00
# Commandline: needle
# -asequence dna-align/BSNT_03479___lysA.1.24716.seq
# -bsequence dna-align/BPUM_2068___lysA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03479___lysA-BPUM_2068___lysA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03479___lysA-BPUM_2068___lysA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03479___lysA
# 2: BPUM_2068___lysA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1366
# Identity: 1001/1366 (73.3%)
# Similarity: 1001/1366 (73.3%)
# Gaps: 74/1366 ( 5.4%)
# Score: 3557.0
#
#
#=======================================
BSNT_03479___ 1 ATGACATTGTTCTTACACGGCACAAGCAGACAAAATCAACATGGTCATTT 50
||||||||||..|||||||||||..|||||||||||.|||..||||||||
BPUM_2068___l 1 ATGACATTGTATTTACACGGCACTTGCAGACAAAATGAACTCGGTCATTT 50
BSNT_03479___ 51 AGAAATCGGAGGTGTGGATGCTCTCTATTTAGCGGAGAAATATGGTACAC 100
||||||.||.|||||.||||||.|.|.||||||.||.|..|||||.||||
BPUM_2068___l 51 AGAAATTGGTGGTGTTGATGCTGTTTCTTTAGCTGAAACGTATGGGACAC 100
BSNT_03479___ 101 CTCTTTACGTATATGATGTGGCTTTAATACGTGAGCGTGCTAAAAGCTTT 150
|.|||||.|||||||||||||||||||||||.|||||.||.|||||||||
BPUM_2068___l 101 CACTTTATGTATATGATGTGGCTTTAATACGGGAGCGCGCAAAAAGCTTT 150
BSNT_03479___ 151 ----AAGCAGGCGTTTATTTTCGCAGGGCTGAAAGCACAGGTGGCATATG 196
||||| |||||....|.||..||.|..||.||.||.|||||||
BPUM_2068___l 151 CAAAAAGCA----TTTATAGAAGAAGAACTAACGGCGCAAGTAGCATATG 196
BSNT_03479___ 197 CGAGCAAAGCATTCTCATCAGTTGCAATGATTCAGCTCGCTGAGGAAGAG 246
||||.||||||||.||.||..|.||.|||.|||||||.||..|.|||||.
BPUM_2068___l 197 CGAGTAAAGCATTTTCCTCCATCGCGATGTTTCAGCTTGCCAAAGAAGAA 246
BSNT_03479___ 247 GGACTTTCTTTAGATGTTGTATCCGGAGGAGAGCTATATACGGC--TGTT 294
|||.|.|||.|.|||||.|||||.||.||.|||||..|.||.|| | ||
BPUM_2068___l 247 GGATTATCTCTTGATGTCGTATCAGGCGGGGAGCTTCACACAGCCAT-TT 295
BSNT_03479___ 295 GCGGCAGGCTTTCCGGCAGAACGCATCCACTTTCATGGAAACAATAAGAG 344
|| ||.||.|||||||.||||...||.||.||.|||||.||||||||.||
BPUM_2068___l 296 GC-GCCGGGTTTCCGGTAGAAAAAATTCATTTCCATGGCAACAATAAAAG 344
BSNT_03479___ 345 CAGGGAAGAACTGCGCATGGCGCTTGAGCACCGCATCGGCTGCATTGTGG 394
|||.||.|||.|....||||||.|.||..||...||||||||.||.||.|
BPUM_2068___l 345 CAGAGATGAATTAAAAATGGCGTTAGAAAACGAGATCGGCTGTATCGTCG 394
BSNT_03479___ 395 TGGATAATTTCTATGAAATTGCGCTTCTTGAAGACCTATGTAAAG----- 439
|.||||||||.||.|||||...||||||||||||.||..||.|||
BPUM_2068___l 395 TAGATAATTTTTACGAAATGAAGCTTCTTGAAGAGCTTGGTCAAGAGCTG 444
BSNT_03479___ 440 ---AAACGGGTCACTCCATCGATGTTCTTCTTCGGATCACGCCCGGAGTA 486
||||.|||.| |.||.||.||.||.|||||.||.||.||.
BPUM_2068___l 445 TCAAAACAGGTAA--------AAGTACTACTACGTATCACACCAGGTGTC 486
BSNT_03479___ 487 GAAGCGCATACGCATGACTACATTACAACGGGCCAGGAAGATTCAAAGTT 536
|||||||||||||||||.||.||||||||.|||||.||||||||.||.||
BPUM_2068___l 487 GAAGCGCATACGCATGATTATATTACAACAGGCCAAGAAGATTCTAAATT 536
BSNT_03479___ 537 TGGTTTCGACCTTCATAACGGACAAAC---TGAA-CGGGCCATCGAACAA 582
.|||||.||||||||.||.||||||.| |||| ||| |..|||.|
BPUM_2068___l 537 CGGTTTTGACCTTCACAATGGACAAGCAGATGAAGCGG----TGAAACGA 582
BSNT_03479___ 583 GTATTACAATCGGAACACATTCAGCTGCTGGGTGTCCATTGCCATATCGG 632
||..|..||||.|||...|||.||||..|.||.||.||||||||||||||
BPUM_2068___l 583 GTGCTTGAATCAGAAGTGATTGAGCTATTAGGCGTACATTGCCATATCGG 632
BSNT_03479___ 633 ATCGCAAATCTTTGATACGGCCGGTTTTGTGTTAGCAGCGGAAAAAATCT 682
.||.|||||.||||||||.||.||||||||..|.|||||.||.|||||||
BPUM_2068___l 633 TTCACAAATATTTGATACAGCTGGTTTTGTCCTTGCAGCAGACAAAATCT 682
BSNT_03479___ 683 TCAAAAAACTAGACGAGTGGAGAGATTCATATTC--ATTTGTATCCAAGG 730
|....||.||..|.||.||||||||.|| |||| .|||.|.||.|..|
BPUM_2068___l 683 TTTTGAAGCTGAATGAATGGAGAGAATC--ATTCGGTTTTATCTCGACCG 730
BSNT_03479___ 731 TGCTGAATCTT-GGAGGAGGTTTCGGCATTCGTTATACGGAAGATGATGA 779
| .|.||.||| ||.||.||.||.||.||.||||||||.|||||.|||||
BPUM_2068___l 731 T-ATTAAACTTAGGCGGCGGCTTTGGTATCCGTTATACAGAAGAGGATGA 779
BSNT_03479___ 780 ACCGCTTCATGCCACTGAATACGTTGAAAAAATTATCGAAGCTGTGAAAG 829
|||.||||.|||.||.||||||||.||.|||||||||.||||||||||||
BPUM_2068___l 780 ACCACTTCCTGCGACAGAATACGTCGAGAAAATTATCCAAGCTGTGAAAG 829
BSNT_03479___ 830 AAAATGCTTCCCGTTACGGTTTTGACATCCCGGAAATTTGGATCGAACCG 879
|.||.|...||||.||.|..|||||.||.|||||.||||||||.||.||.
BPUM_2068___l 830 AGAACGTGGCCCGCTATGAGTTTGATATGCCGGAGATTTGGATTGAGCCA 879
BSNT_03479___ 880 GGCCGTTCTCTCGTGGGAGACGCAGGCACAACTCTTTATACGGTTGGCTC 929
|||||.|||||.||.|||||.|||||.|||||.|||||||||.|.|||||
BPUM_2068___l 880 GGCCGCTCTCTTGTTGGAGATGCAGGGACAACGCTTTATACGATCGGCTC 929
BSNT_03479___ 930 -TCAAAAAGAAGTGCCGGGTGTCCGCCAGTATGTGGCAGTAGACGGAGGC 978
|| ||||.|.||.||.|||.|.|||.|.|||||.||.|||||.||.||.
BPUM_2068___l 930 ATC-AAAACACGTACCTGGTATTCGCGATTATGTTGCGGTAGATGGGGGA 978
BSNT_03479___ 979 ATGAACGACAATATTCGTCCTGCGCTTTACCAAGCTAAATATGAAGCTGC 1028
||||..|||||.||||||||.||..|.||.|||||.||||||||| ||
BPUM_2068___l 979 ATGAGTGACAACATTCGTCCAGCTTTATATCAAGCGAAATATGAA---GC 1025
BSNT_03479___ 1029 GGCA---GCCAACAGGATCGGAG--AAGCGCATGACAAAACGGTATCAAT 1073
|||| |||||.|..|| ||| ||.||||.||..||||.||.||.||
BPUM_2068___l 1026 GGCAAGTGCCAATAAAAT--GAGTCAATCGCACGATCAAACAGTTTCCAT 1073
BSNT_03479___ 1074 TGCCGGAAAGTGCTGTGAAAGCGGAGATATGCTGATTTGGGATATTGACC 1123
|||.||.||.|||||||||||.||.||||||||.|||||||||||.||..
BPUM_2068___l 1074 TGCAGGGAAATGCTGTGAAAGTGGTGATATGCTTATTTGGGATATCGATT 1123
BSNT_03479___ 1124 TGCCGGAAGTAAAAGAAGGCGATCTTCTT-GCCGTTTTTTGTACAGGCGC 1172
||||.||..||..|.||||.||| ||.|| ||.||.||||||||.||.||
BPUM_2068___l 1124 TGCCAGAGTTATCACAAGGTGAT-TTATTAGCTGTCTTTTGTACCGGAGC 1172
BSNT_03479___ 1173 TTATGGATACAGCATGGCCAACAATTATAACCGTATTCCGAGACCCGCCG 1222
|||.||.|||||.|||.|.|||||.||||||||.||.|||.|.||.||.|
BPUM_2068___l 1173 TTACGGCTACAGTATGTCTAACAACTATAACCGCATCCCGCGCCCGGCTG 1222
BSNT_03479___ 1223 TTGTATTTGTCGAAAACGGTGAGGCTCATTTAGTCG-TGAAGCGAGAAAC 1271
|.||||||||.|||.||||.||.||.||..|.|||| |||| ||.|||.|
BPUM_2068___l 1223 TCGTATTTGTAGAAGACGGGGAAGCGCAGCTTGTCGTTGAA-CGCGAATC 1271
BSNT_03479___ 1272 ATACGAGGATATTGTAAAACTTGATCTGCCATTTAAAACAGGTGTAAAGC 1321
|||.|.||||||.||.|||||||||.||||.|.|.||.|| ||||.
BPUM_2068___l 1272 ATATGCGGATATGGTCAAACTTGATTTGCCGTATCAATCA-----AAAGT 1316
BSNT_03479___ 1322 AA-----------TAA 1326
|| |||
BPUM_2068___l 1317 AAAATCATCTACGTAA 1332
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