Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03474 and BPUM_2066
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:59
# Commandline: needle
# -asequence dna-align/BSNT_03474___ppiB.1.24716.seq
# -bsequence dna-align/BPUM_2066___ppiB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03474___ppiB-BPUM_2066___ppiB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03474___ppiB-BPUM_2066___ppiB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03474___ppiB
# 2: BPUM_2066___ppiB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 459
# Identity: 332/459 (72.3%)
# Similarity: 332/459 (72.3%)
# Gaps: 48/459 (10.5%)
# Score: 1197.0
#
#
#=======================================
BSNT_03474___ 1 AT---GAAAACAGGTTACAT---TTTAATGGAAAATGGCAACAAACTTGA 44
|| |||||.|||.||||| ..|||.| |||||.||.||||||||
BPUM_2066___p 1 ATGGCGAAAAAAGGATACATACAACTAACG---AATGGTAAGAAACTTGA 47
BSNT_03474___ 45 ATTTGAACTTTACGATGAAGCAGCTCCGGGTACAGTAGCTAACTTTGAAA 94
.||||||||.|||...||.||.|||||.|||||||||||.||||||||||
BPUM_2066___p 48 GTTTGAACTATACCCAGAGGCTGCTCCAGGTACAGTAGCAAACTTTGAAA 97
BSNT_03474___ 95 AGCTTGCGAATGAAGGCTTTTATGATGG--TGTAACTTTCCACCGAGTAA 142
|..|.||||||||||||||.||.||||| ||.|| ||.|||||.||||
BPUM_2066___p 98 AATTAGCGAATGAAGGCTTCTACGATGGATTGAAA--TTTCACCGCGTAA 145
BSNT_03474___ 143 TTCCAGGTTTCGTAAGCCAAGGGGGAGATCC------TACTGGAACAGGG 186
|.||.|||||||||||||||||.||.||||| ||.||||||
BPUM_2066___p 146 TCCCTGGTTTCGTAAGCCAAGGCGGCGATCCAAACGGTAATGGAAC---- 191
BSNT_03474___ 187 ATGGGTGGCCCAGGTTACACAATCAAATGTGAAACAGAAGGAAATCCGCA 236
.|||||.||.|||||||||||.|||||||||||||||||||||||.||
BPUM_2066___p 192 --TGGTGGTCCTGGTTACACAATTAAATGTGAAACAGAAGGAAATCCACA 239
BSNT_03474___ 237 TACACATGAAGCGGGCTCTCTTTCTATGGCACATGCCGGAAAAGACACTG 286
|..|||.|||...||.||..|.||.|||||.|||||.||.||||||||.|
BPUM_2066___p 240 TCAACACGAAAGAGGTTCATTATCAATGGCGCATGCTGGTAAAGACACGG 289
BSNT_03474___ 287 GCGGCAGCCAATTTTTCATCGTTCATGAGCCACAGCCTCATTTGAACGGT 336
||||.||||||||.||.|||||.|||||.||.|||||.||.||.||||||
BPUM_2066___p 290 GCGGTAGCCAATTCTTTATCGTACATGACCCGCAGCCACACTTAAACGGT 339
BSNT_03474___ 337 GTTCACACTGTATTCGGTAAAGTAACAAGCGGATTAGA----ATTCGCGA 382
|||||||||||.||.||.|||||||||...|||.|.|| .|||..||
BPUM_2066___p 340 GTTCACACTGTTTTTGGCAAAGTAACATCTGGAATCGAGGCTGTTCTAGA 389
BSNT_03474___ 383 AA---AACATGTCTAACGGCGATGTCATGAAA-----GAAGTTCGCGTAG 424
.| ||||.|.|.|| |..||| |||| ||||||..||
BPUM_2066___p 390 TATGGAACAAGGCCAA--GGAATG----GAAAAAGTCGAAGTTTTCG--- 430
BSNT_03474___ 425 AAGGCTAA- 432
|.|||.|
BPUM_2066___p 431 -ATGCTTAA 438
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