Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01170 and BPUM_2064
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:48
# Commandline: needle
# -asequence dna-align/BSNT_01170___yezE.1.24716.seq
# -bsequence dna-align/BPUM_2064___yezE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01170___yezE-BPUM_2064___yezE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01170___yezE-BPUM_2064___yezE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01170___yezE
# 2: BPUM_2064___yezE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 732
# Identity: 338/732 (46.2%)
# Similarity: 338/732 (46.2%)
# Gaps: 297/732 (40.6%)
# Score: 538.5
#
#
#=======================================
BSNT_01170___ 1 -------------------TTGGGGAGGAATAAAGAATTTGATACGGCGC 31
|||...||||| ||||..||.|||..|||..
BPUM_2064___y 1 ATGGTTCGACAACGGGAATTTGACAAGGAA-AAAGCGTTGGATGAGGCAA 49
BSNT_01170___ 32 TTGTTCTTCACAGGGCGATAGAGGTTTTTGGA----GAGTAT--GGCTAC 75
|..|.||| ||||.||| |.|||| ||||||
BPUM_2064___y 50 TGATGCTT----------------TTTTGGGAAAAGGGGTATAGGGCTAC 83
BSNT_01170___ 76 GAAGGAACGTCTC-TTCAG-GATCTGCTCTCTCATT-------TAGGCAT 116
.| | ||.|| |||.|| |.| |.||.||
BPUM_2064___y 84 TA----------CATTAAGCGATTTG-------ACTGAAAAAATGGGAAT 116
BSNT_01170___ 117 TGCGCGCCAAAGTTTGTATGATA-----CGTATGG-CACGAAGCGTGATT 160
...|||.|.|||||| ||| |||.||| .|..|||.| ||.|
BPUM_2064___y 117 ACAGCGACCAAGTTT-----ATACTCAGCGTTTGGAGATAAAGAG-GAAT 160
BSNT_01170___ 161 TGTTTTTGTCCGC--TGTGAAAACGTATCTTGAAGGGAAAAA----CA-- 202
|.|||..|.|||| |..||||| ||| |.||| ||
BPUM_2064___y 161 TATTTGAGGCCGCATTAAGAAAA--TAT---------ACAAAGCACCATG 199
BSNT_01170___ 203 CTGCCGTTAT--GGA-AAGGCTT-----GAATCGCCAGGATCTGTAAAGG 244
|||||..||| |.| ||..||| .|||| ..|||||.||.|
BPUM_2064___y 200 CTGCCCATATTCGAACAAAACTTCAAAACAATC-----TTTCTGTCAAAG 244
BSNT_01170___ 245 AAGCCATTC--GTAATATTT-----TTCA--AGAAGGTGTCAATGCTTTG 285
||||..||| |.|.||||| ||.| |||||..| |||.|...|
BPUM_2064___y 245 AAGCATTTCATGCATTATTTGCAGATTTAGTAGAAGAGG--AATACAGAG 292
BSNT_01170___ 286 AGGGATCCTGAACGGGCGAAGGCGTGCTAT---ATCATTAACA------- 325
|||| || ||.|..|||| .||.|.| ||||.| |||
BPUM_2064___y 293 AGGG-TC-----CGAGTAAAGG-ATGTTTTTGCATCAAT-ACAATAGTGG 334
BSNT_01170___ 326 -----GCGCGA-------------TTGAACAGATTC---------CGCAT 348
||||.| ||||| |||| .||||
BPUM_2064___y 335 AACTTGCGCCACACGAAGAGAAATTTGAA---ATTCTTACAAGAGAGCAT 381
BSNT_01170___ 349 --GACCCTG-AGCTTGCCCGGT-AT-TTTGACAGACAATCCAAGCAGCTT 393
|| || |.|||.|| || || ||||| ||| |||.| ||
BPUM_2064___y 382 CAGA---TGTATCTTTCC--GTCATATTTGA-AGA------AAGAA--TT 417
BSNT_01170___ 394 G----AGGACGCTTTTTA-TCAGGCGCTTTTAAGGGCGAAGGATC--AAG 436
| ||| || ||| |||| ||.|| |.|| |||
BPUM_2064___y 418 GTTCAAGG--------TATTCA------TTTA--GGTGA--GCTCAAAAG 449
BSNT_01170___ 437 GAGAATTGAATGGCGAAGATACTGATATAACTGCGCTTGCCCGTTACCTG 486
.|| ..||||| ||||| .||| |||.|..
BPUM_2064___y 450 CAG-CCTGAAT-GCGAA----------------AGCT------TTAGCAC 475
BSNT_01170___ 487 AATCAAAGCAGGCTGTCTCTGACATTTGTTGCGAAAGTGACGG--CTGAT 534
||.|| |.||..||.|||..||||.| |.||||.| ||.||
BPUM_2064___y 476 AAACA---CTGGTCGTTTCTTTCATTGG-------ACTGACCGTCCTCAT 515
BSNT_01170___ 535 ATGGA----TCGGCTTCAGAAC---CATGTT-----------------GA 560
|| ||| |.||||.| ||| || ||
BPUM_2064___y 516 ---GAAATCTCG--TCCAGAGCGTTCAT-TTGTAGATCATTCTGTAGCGA 559
BSNT_01170___ 561 CGTGAGTTT--ATCAGTGCTTGATTAA----- 585
||..|.||| || |||||
BPUM_2064___y 560 CGATACTTTCCAT---------ATTAAAATAA 582
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