Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03463 and BPUM_2061
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:59
# Commandline: needle
# -asequence dna-align/BSNT_03463___ribE.1.24716.seq
# -bsequence dna-align/BPUM_2061___ribE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03463___ribE-BPUM_2061___ribE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03463___ribE-BPUM_2061___ribE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03463___ribE
# 2: BPUM_2061___ribE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 697
# Identity: 443/697 (63.6%)
# Similarity: 443/697 (63.6%)
# Gaps: 95/697 (13.6%)
# Score: 1322.5
#
#
#=======================================
BSNT_03463___ 1 ATGTTTACAGGAATTATCGAAGAAACAGGCA-----CAATCGAATCCATG 45
||||||||.||.||.||.||||||...|||| ||||| ||..|..
BPUM_2061___r 1 ATGTTTACGGGGATAATTGAAGAAGTTGGCACCGTTCAATC--ATTAAGT 48
BSNT_03463___ 46 AAAAA---AGCAG--------------GGCATTCAATGGCCTTAACAATT 78
||||| ||||| |.||||||.|| ||.|.||
BPUM_2061___r 49 AAAAAGTCAGCAGATGCCATGGAAATTGTCATTCAGTG----TAGCCAT- 93
BSNT_03463___ 79 AAATGCTCAAAGATTTTAGAGGATGTTCATCTTGGCGACAGCATTGCAGT 128
.||| ||||.||||||||.|||||.|||||.|||||..|
BPUM_2061___r 94 --GTGC----------TAGAAGATGTTCACCTTGGAGACAGTATTGCGAT 131
BSNT_03463___ 129 GAACGGCATTTGTTTGACGGTCACTGATTTTACAAAAAATCAATTCACAG 178
.||.||..|.|||.|.||.|||||....|||||||||...||.|||.|||
BPUM_2061___r 132 TAATGGTGTATGTCTTACTGTCACAAGCTTTACAAAAGCACAGTTCGCAG 181
BSNT_03463___ 179 TGGATGTTATGCCTGAAACAGTCAAAGCTACGTCACTGAATGATTTAACA 228
..|||||.|||||.||.|||||||||||.||.||||||.||.|..|.|||
BPUM_2061___r 182 CAGATGTGATGCCAGAGACAGTCAAAGCGACATCACTGGATCAGCTGACA 231
BSNT_03463___ 229 AAAGGAAGCAAAGTAAATCTGGAAAGAGCG----ATGGCGGCAAACGGCC 274
..|||.||...|||.|||.| |||||| |||.|..|.||.||.|
BPUM_2061___r 232 TCAGGCAGTCCAGTGAATTT----AGAGCGGGCTATGTCCTCGAATGGGC 277
BSNT_03463___ 275 GTTTCGGAGGCCATTTCGTCTCAGGCCATGTCGACGGAACTGCGGAAATC 324
|.|||||.||.||||||||||||||||||||.|||||.||.||.|..||.
BPUM_2061___r 278 GATTCGGCGGTCATTTCGTCTCAGGCCATGTTGACGGGACGGCAGTCATT 327
BSNT_03463___ 325 ACACGAATTGAAGAGAAAAGCAACGCAGTTTACTATGATTTAAAAATGGA 374
||.|||||.|||.|||||||.||.||..||||||||||||||.|.|||||
BPUM_2061___r 328 ACCCGAATAGAAAAGAAAAGTAATGCCATTTACTATGATTTAGAGATGGA 377
BSNT_03463___ 375 C----CCGTCA--------TTAACAAAAACATTGGTTTTAAAGGGATCAA 412
| ||.||| .|.|||.| ||||||.||.|
BPUM_2061___r 378 CAAGACCCTCACAGATATGCTCACACA------------AAAGGGTTCGA 415
BSNT_03463___ 413 TTACTGTGGATGGCGTGAGCTTAACCATATTCGGCCTGACAGAAGACACA 462
|..|..|.|||||.||.||||||||.||.||||...||..|| |..||||
BPUM_2061___r 416 TCGCAATAGATGGTGTCAGCTTAACTATTTTCGATTTGCGAG-ATTCACA 464
BSNT_03463___ 463 -GTGACGATCTCCTTAATACCGCATACGATCAGCGAAACGATCTTTTCAG 511
||.||..||||..|.||.||.||||||.|....|.|||.|| |||.|.|
BPUM_2061___r 465 TGTTACAGTCTCTATTATTCCTCATACGCTTGAAGGAACTAT-TTTCCCG 513
BSNT_03463___ 512 A-AAAAACGATCGGCTCTAAAGTGAATATCGAATGCGATATGATCGGAAA 560
| .|||.|.||.||....|..||||||||.||.||.||.||||||||.||
BPUM_2061___r 514 ACTAAATCTATGGGGGAGATTGTGAATATAGAGTGTGACATGATCGGTAA 563
BSNT_03463___ 561 ATATATGTATCGATTTTT-------GCATAAAGCCAATGAAAATAAGACC 603
||||||.|||||.||.|| |.|.||.|| |||||..|| |
BPUM_2061___r 564 ATATATTTATCGCTTCTTAACAAAAGAACAAGGC----GAAAAGCAG--C 607
BSNT_03463___ 604 CAACAAACC-ATT-ACAAAAGCCTTCTTAAGCGAAAACGGCTTTTAG 648
||.| || ||| ||...|.|.||.||||..||..||||.||.|||
BPUM_2061___r 608 CATC---CCGATTGACCCCATCATTTTTAAAAGAGCACGGATTCTAG 651
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