Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03460 and BPUM_2059

See Amino acid alignment / Visit BSNT_03460 in genome browser / Return to Orthologue table

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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:59
# Commandline: needle
#    -asequence dna-align/BSNT_03460___ribH.1.24716.seq
#    -bsequence dna-align/BPUM_2059___ribH.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03460___ribH-BPUM_2059___ribH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03460___ribH-BPUM_2059___ribH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03460___ribH
# 2: BPUM_2059___ribH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 472
# Identity:     344/472 (72.9%)
# Similarity:   344/472 (72.9%)
# Gaps:          14/472 ( 3.0%)
# Score: 1209.5
# 
#
#=======================================

BSNT_03460___      1 ATGAATATCATACAAGGAAATTTAGTTGGTACAGGTCTTAAAATCGGAAT     50
                     |||||||..||||||||..||.||||.|....|||.||.|||.|.|.|||
BPUM_2059___r      1 ATGAATACAATACAAGGGCATGTAGTAGCAGAAGGACTAAAATTTGCAAT     50

BSNT_03460___     51 CGTAGTAGGAAGATTTAATGATTTTATTACGAGCAAGCTGC-TGAGCGGA     99
                     .||.||.|..|||||||||||.||||||||.||.||..||| ||| ||||
BPUM_2059___r     51 TGTCGTCGCGAGATTTAATGACTTTATTACAAGTAAATTGCTTGA-CGGA     99

BSNT_03460___    100 GCAGAAGATGCGCTGCTCAGACATGGCGTAGACACAAA---TGAC---AT    143
                     |||||||||.|..||||||||||.||.|      ||||   ||||   ||
BPUM_2059___r    100 GCAGAAGATACATTGCTCAGACACGGAG------CAAACGGTGACGATAT    143

BSNT_03460___    144 TGATGTGGCTTGGGTTCCAGGCGCATTTGAAATACCGTTTGCTGCGAAAA    193
                     ||||||.|..|||||.||.||.||.||||||||.||||.|...||.||||
BPUM_2059___r    144 TGATGTCGTGTGGGTACCGGGTGCTTTTGAAATTCCGTATATGGCAAAAA    193

BSNT_03460___    194 AAATGGCGGAAACAAAAAAATATGATGCTATTATCACATTGGGCACTGTC    243
                     ||.|.||.||||||.|.||||||||||||.|.||.|||.|.||.|||||.
BPUM_2059___r    194 AACTAGCTGAAACAGAGAAATATGATGCTGTCATTACACTAGGAACTGTA    243

BSNT_03460___    244 ATCAGAGGCGCAACGACACATTACGATTATGTCTGCAATGAAGCTGCAAA    293
                     |||||.||||||||.||.||.|||||||||||.||.|||||||||||.||
BPUM_2059___r    244 ATCAGGGGCGCAACAACTCACTACGATTATGTTTGTAATGAAGCTGCTAA    293

BSNT_03460___    294 AGGCATCGCGCAAGCAGCAAACACTACTGGTGTACCTGTCATCTTTGGAA    343
                     |||.||.||.|||...||.|...|.||.||.|||||..|.|||||.||..
BPUM_2059___r    294 AGGAATTGCTCAAAGTGCTATGTCAACAGGGGTACCGATTATCTTCGGTG    343

BSNT_03460___    344 TTGTAACAACTGAAAACATCGAACAGGCTATCGAGCGTGCCGGCACAAAA    393
                     |..|||||||.|||..|||.|||||.|||||.||..|.||||||||||||
BPUM_2059___r    344 TACTAACAACAGAATCCATTGAACAAGCTATTGAAAGAGCCGGCACAAAA    393

BSNT_03460___    394 GCGGGCAATAAAGGTGTAGATTGTGCTGTTTCTGCCATTGAAATGGCAAA    443
                     ||.||.||||||||....||.|..||||...||||||||||||||||.||
BPUM_2059___r    394 GCTGGAAATAAAGGCAGCGAATCGGCTGCAGCTGCCATTGAAATGGCGAA    443

BSNT_03460___    444 TTTAAACCGCTCATTTGAATAA    465
                     |.|.||.||..|.|||...|||
BPUM_2059___r    444 TCTCAATCGTACCTTTCGTTAA    465


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