Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03451 and BPUM_2052
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:58
# Commandline: needle
# -asequence dna-align/BSNT_03451___dacB.1.24716.seq
# -bsequence dna-align/BPUM_2052___dacB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03451___dacB-BPUM_2052___dacB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03451___dacB-BPUM_2052___dacB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03451___dacB
# 2: BPUM_2052___dacB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1216
# Identity: 825/1216 (67.8%)
# Similarity: 825/1216 (67.8%)
# Gaps: 125/1216 (10.3%)
# Score: 2593.0
#
#
#=======================================
BSNT_03451___ 1 ------ATGCGC-ATTTTCAAAAA-------AGCAGT-ATTCGTGATCAT 35
||||.| |||| ||||| |||||| .|||
BPUM_2052___d 1 ATGAACATGCCCTATTT--AAAAATTGGAACAGCAGTCCTTC-------- 40
BSNT_03451___ 36 GATTTCTTT------TCTTATTGC----AACCGTAAATGTGAATACAGCA 75
||||.| |||||.||| ..||..|.|||..|| ||||
BPUM_2052___d 41 ---TTCTATTTACACTCTTACTGCCTTTTTCCTCACATGCCAA---AGCA 84
BSNT_03451___ 76 CATGCTG---CTATAGATGTCAGTGCAAAAAGCGCGATCATTATTGACGG 122
.||| || .|||.| ||.|||||||.||||||.||..|.||.||.||
BPUM_2052___d 85 GATG-TGTCATTATCG--GTGAGTGCAAGAAGCGCCATTTTAATAGATGG 131
BSNT_03451___ 123 TGCGTCAGGCAGAGTGTTATATGCCAAGGATGAGCATCAAAAAAGGCGGA 172
...||||||||||||..|||.||..|||||.||||||.|||||||..|.|
BPUM_2052___d 132 ACAGTCAGGCAGAGTCCTATTTGGAAAGGACGAGCATGAAAAAAGAAGAA 181
BSNT_03451___ 173 TCGCGAGCATCACAAAAATTATGACCGCCGTCCTCGCCATCGAATCCGGC 222
||||.||.||.||.|||||||||||.||.||..|.|||||.|||||.||.
BPUM_2052___d 182 TCGCCAGTATTACGAAAATTATGACGGCGGTATTAGCCATTGAATCAGGG 231
BSNT_03451___ 223 AAAATGGATCAAACGGTGACGGTTTCGGCAAATGCTG------TCAGAAC 266
||||||.|..|.||.||.|..||.|| ||.|| | ||| |.|
BPUM_2052___d 232 AAAATGAAAGACACCGTCAAAGTATC----AAAGC-GCGCGATTCA-AGC 275
BSNT_03451___ 267 AGAAGGCTCCGCCATTTATTTAACAGAAGGTCAAAAAGTGAAGCTAAAAG 316
|||.|||||..|.||||||||||.||||||.||.||.||||..|||.|||
BPUM_2052___d 276 AGAGGGCTCATCGATTTATTTAAAAGAAGGGCAGAAGGTGAGCCTAGAAG 325
BSNT_03451___ 317 ATCTTG-TGTATGGCCTGATGCTAAGATCAGGAAACGACGCCGCTGTCGC 365
|| ||| ..||.||.||.|||||..|.||.|||||.||.||.|||||.||
BPUM_2052___d 326 AT-TTGACATACGGGCTTATGCTGCGTTCTGGAAATGATGCAGCTGTTGC 374
BSNT_03451___ 366 GATTGCTGAGCATGTCGGTGGGAGCCTCGATGGGTTTGTTTATATGATGA 415
.|||||.||||||||.||.||.|||.|.||.||.|||.|||.||||||||
BPUM_2052___d 375 CATTGCAGAGCATGTGGGCGGCAGCTTAGAAGGATTTATTTTTATGATGA 424
BSNT_03451___ 416 ATCAAAAAGCCGAGCAGCTTGGTATGAAAAACACCCGTTTTCAAAACCCG 465
|.||||||||.....|.||.||.|||.|.||.||...|||||||||.|||
BPUM_2052___d 425 ACCAAAAAGCGTCTGAACTAGGAATGGAGAATACGAATTTTCAAAATCCG 474
BSNT_03451___ 466 CACGGATTGGACGACCATGAAAATCATTATTCAACAGCCTATGACATGGC 515
||.|||.|.||.||.|||.|.||.|||||||||.||||||||||||||||
BPUM_2052___d 475 CATGGACTCGATGATCATAAGAACCATTATTCATCAGCCTATGACATGGC 524
BSNT_03451___ 516 CATTTTAACTAAG-TATGCTATGAAGCTGAAAGACTATCAAAAGATTTCA 564
.||.||||| ||| ||.||.|||.|||..|||.|.||||||||.|||.|.
BPUM_2052___d 525 AATCTTAAC-AAGATACGCCATGGAGCATAAACAATATCAAAAAATTGCG 573
BSNT_03451___ 565 GGCACAAAAATATACAAAGCGGAAACGATGGAAAGCGTA-TGGAAAAACA 613
|||||.|...|.||.|||||..|||||||||||.|| || ||||||||.|
BPUM_2052___d 574 GGCACGACTTTCTATAAAGCAAAAACGATGGAAGGC-TATTGGAAAAATA 622
BSNT_03451___ 614 AAAATAAACTGCTGACCATG--CTATATCCGTA--CAGCACAGGAGGAAA 659
||||.||.||.||.|| || .||||||..|| || ||.|||||.||
BPUM_2052___d 623 AAAACAAGCTCCTCAC--TGGTTTATATCAATATTCA--ACTGGAGGGAA 668
BSNT_03451___ 660 AACAGGCTATACAAAACTTGCAAAACGGACACTGGTCTCTACGGCTTCAA 709
|||.||.||||||||||||||||||||.|||||.||.|||||.|||.|||
BPUM_2052___d 669 AACGGGATATACAAAACTTGCAAAACGCACACTTGTTTCTACAGCTGCAA 718
BSNT_03451___ 710 A--GGACGGCATTGACCTGATAGCCGTCACCATTAATGACCCTAATGATT 757
| |||..||| |..|||||.||.||.||||||||||..||..||||||
BPUM_2052___d 719 AAGGGAATGCA--GCGCTGATCGCTGTGACCATTAATGCGCCAGATGATT 766
BSNT_03451___ 758 GGGATGACCATATGAAGATGTTTAACTATGTGTTTGAGCATTATCAAACC 807
||.|.||.|||||....||||||.|.||||..|||||.||.|||.||||.
BPUM_2052___d 767 GGAAGGATCATATCTCTATGTTTGAATATGCATTTGATCACTATAAAACG 816
BSNT_03451___ 808 TATTTAATTGCAAAAAAAGGGGATATTCCAAAGC-----TGAAAGGCACA 852
||..||.||||..||||| ||.|.|.|| || |.|||||.||.
BPUM_2052___d 817 TACGTACTTGCTGAAAAA-GGAAGACTC----GCTTCATTAAAAGGAACC 861
BSNT_03451___ 853 TTTTATGAATCGAAGGCTTTTATCAAACGTGATATCACCTATTTGCTGAC 902
|||||.|||...|||||.|||||||||||||||.|...||||||..|.|.
BPUM_2052___d 862 TTTTACGAAAAAAAGGCATTTATCAAACGTGATGTGGACTATTTTTTAAA 911
BSNT_03451___ 903 TGAAGAGGAAAAAGAAGAT-GTGAAAATTAATACCACACTGCTCAAGC-- 949
||||||.||.||| |||.| ||..|||||.|.|||..|.||||.|..|
BPUM_2052___d 912 TGAAGATGAGAAA-AAGCTAGTAGAAATTGAAACCGAAATGCTTACTCCT 960
BSNT_03451___ 950 CGAAAAAAGCATGGGAAAAAGATGCCTCGAA--AATCCCTGACATCGTAG 997
|.|||.||| ||||.||||.|.|| |||| .||.||.||..|.||||
BPUM_2052___d 961 CAAAAGAAG--TGGGCAAAAAACGC--CGAAGCCATTCCAGATGTTGTAG 1006
BSNT_03451___ 998 GGCACATGGAGAT-------CATGTTCAACGATGCAACCATCGCAAAAGT 1040
|..|.|||..|.| .|||.||| |.|| ||||...||||
BPUM_2052___d 1007 GAAAAATGACGTTTTTATTAGATGGTCA--GGTG-----ATCGAGCAAGT 1049
BSNT_03451___ 1041 GCCGATCTATTATGAAAATGAGCGGCATCAAAAACCGAAGAAA------C 1084
.|||||||.||||||||||.|.||..|||.||..||..|.||| |
BPUM_2052___d 1050 ACCGATCTTTTATGAAAATAAACGAAATCGAATGCCACAAAAAAGCTTCC 1099
BSNT_03451___ 1085 AATTTTTTGAAACGTTTAAATCAATCTTTCTGA-ATGCGGCAGGCGGAGC 1133
|| ||||.||||||.||..||||||.|| || ||..|||||||.|
BPUM_2052___d 1100 AA------GAAATGTTTAAGTCTGTCTTTCAGACAT-CGATAGGCGGATC 1142
BSNT_03451___ 1134 AAAATGGTCAATATAA 1149
...|||||||||.|||
BPUM_2052___d 1143 TTCATGGTCAATCTAA 1158
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