Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03441 and BPUM_2046
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:58
# Commandline: needle
# -asequence dna-align/BSNT_03441___resC.1.24716.seq
# -bsequence dna-align/BPUM_2046___resC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03441___resC-BPUM_2046___resC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03441___resC-BPUM_2046___resC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03441___resC
# 2: BPUM_2046___resC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1221
# Identity: 854/1221 (69.9%)
# Similarity: 854/1221 (69.9%)
# Gaps: 87/1221 ( 7.1%)
# Score: 2850.0
#
#
#=======================================
BSNT_03441___ 1 ATGGCAG-AGCTGAGCGGAAA--TTTTCTTTATGCGGCCTTTCTTGTGTA 47
||||||| || |.||.|.||| |.||.|| |||.||.|||||..||||
BPUM_2046___r 1 ATGGCAGCAG-TCAGTGAAAACCTGTTATT--TGCAGCTTTTCTATTGTA 47
BSNT_03441___ 48 TTTAATCGCTGTCCCGATCTTCGGCGGGGCCATACGCGGGAATAAAGATA 97
||||...||.||.||..|.||.|||||.||||| |||||..|
BPUM_2046___r 48 TTTAGCGGCAGTTCCTTTTTTTGGCGGTGCCAT---------TAAAGGAA 88
BSNT_03441___ 98 AAAAGGGCAGGCCAAA-CCGATGGGCCAACATTGGAAT-------CACT- 138
||||| ||| ..|||||.|| .|.|.||||| ||||
BPUM_2046___r 89 AAAAG--------AAAGTTGATGGACC-GCGTAGGAATAAGGCGGCACTT 129
BSNT_03441___ 139 ------------CTTTCTATTGTCGGTTTTTTCTGCCACCTTGGATATTT 176
||..|.||..|.||.|||||..|.||..||||.||.||
BPUM_2046___r 130 ATCGGCATTACGCTCACCATCATTGGCTTTTTAAGTCAATTTGGCTACTT 179
BSNT_03441___ 177 CATCACAAGGTGGGCTGCCAGC-GGCCATGCGCCGGTCAGCAATATGTTT 225
.||..||||||||| ||.|..| ||.|||||.||.|||||||||.|||||
BPUM_2046___r 180 TATTTCAAGGTGGG-TGGCGTCTGGTCATGCACCAGTCAGCAATTTGTTT 228
BSNT_03441___ 226 GAATTCACCACCGCTTTTGGCATGATGCTTGTTTTGGCGTTTATCATTCT 275
||||||||.||.||||||||||||||||||||..|.||.||.||.|||.|
BPUM_2046___r 229 GAATTCACAACGGCTTTTGGCATGATGCTTGTGCTCGCATTCATTATTTT 278
BSNT_03441___ 276 TTATTTTCTCTATAGATTGCCTTCATTAGGCCTGTTTACGCTGTCAATTG 325
.||||||.|.|||..|.||.||..|.|.||..|.|||||.||..||||||
BPUM_2046___r 279 ATATTTTGTGTATCAAGTGTCTGTACTTGGTTTATTTACACTTCCAATTG 328
BSNT_03441___ 326 CTTTATTGCTGATTGCCTACGCCAGCATGTTTCCGACAGATATCTCGCCT 375
||||||||.|.||||||||.||.||||||||.||..|.|||||.||.||.
BPUM_2046___r 329 CTTTATTGATTATTGCCTATGCAAGCATGTTCCCATCTGATATATCACCG 378
BSNT_03441___ 376 TTAATTCCTTCGCTCCAAAGCAACTGGCTGTATATTCATGTAACAACGGC 425
.||||||||||..|.|||||.||.|||||.||||||||.||.|||||.||
BPUM_2046___r 379 CTAATTCCTTCATTACAAAGTAATTGGCTTTATATTCACGTGACAACAGC 428
BSNT_03441___ 426 CGCGCTTGGGCAAGCTATACTTGCCATCAGCTTTGTCGCTGGTGTCATCT 475
.||.||.|||||||||||..|.||.||.||||||||.||.||.|||||||
BPUM_2046___r 429 AGCACTAGGGCAAGCTATTTTAGCGATTAGCTTTGTGGCAGGCGTCATCT 478
BSNT_03441___ 476 TTCTTTTGAAGCATGTAGACCAGACAAAGCCAAGCAAAAAGACCTTCTGG 525
||.|.||.||.|||||.||.||.|||||||||.|.||.|||||.|| |||
BPUM_2046___r 479 TTTTATTAAAACATGTCGATCAAACAAAGCCAGGGAAGAAGACATT-TGG 527
BSNT_03441___ 526 CTTGAAG--CGATTATGTTTATCCTGGT-----CACAACCGTCGCCTTTA 568
.||..|| || |.||||||||..|.|| ||| |.||.||||
BPUM_2046___r 528 TTTAGAGCTCG-TCATGTTTATGATTGTTGTGACAC-----TGGCATTTA 571
BSNT_03441___ 569 TTGCAATCACATC-AGCATTTCGTCTTGCAGGCTATGAAGCGGAGTTTAA 617
|.||..||||.|| |.| |||.|..|..||||.||.|||||..|.|||||
BPUM_2046___r 572 TCGCTGTCACGTCTATC-TTTAGAATGACAGGATACGAAGCAAAATTTAA 620
BSNT_03441___ 618 CTGGGTGGACAAAAGTAAAGAAAAAGGCGTGATGGTGTACGAAATGCCCG 667
.|||||.||.||||.||||||..||.|.||||||||.||.||..||||.|
BPUM_2046___r 621 TTGGGTCGATAAAAATAAAGAGGAAAGTGTGATGGTCTATGAGCTGCCAG 670
BSNT_03441___ 668 CGCTTGTCGGTCCGCATCAGGGAGAGCTTTTGACCGAAGGAAGA----AT 713
|.||.||.||.||.|||.|.|||||||||.|||| |.|||| .|
BPUM_2046___r 671 CTCTAGTTGGACCTCATAAAGGAGAGCTTGTGAC----GCAAGATCGTTT 716
BSNT_03441___ 714 GAAACCGCTTGTTGATCTTCCCGCGC--TTTTCTCAGGCAGAAAAGTGAA 761
|.|||||.|||||||| ||.|||| | ||||.|||||.|||||.||.||
BPUM_2046___r 717 GGAACCGTTTGTTGAT-TTGCCGC-CTGTTTTTTCAGGTAGAAAGGTCAA 764
BSNT_03441___ 762 CACTGTCATTTGGTCATT-----TGGAGCAGGTCTTGTGTTGTATGGGGC 806
.||.||..|.|||||||| |||.||.|.||||||.| ||.|
BPUM_2046___r 765 TACGGTGTTATGGTCATTCGGCATGGGGCTGATCTTGTAT------GGAC 808
BSNT_03441___ 807 T-CTCCGTCTGATCATCAGAAAAAGAATCAGCGCTCTATTACATCCGCTG 855
| .|.||..|||||||..|.|||.||.|.||.|||||..|.||.|||||.
BPUM_2046___r 809 TGATTCGCTTGATCATTCGCAAACGACTGAGTGCTCTGCTTCAACCGCTC 858
BSNT_03441___ 856 GTGAAAAACGTCAATCTTGATCTGGTGGATGAGGTTGGGTACAGGGCCGT 905
||||||.|.||.||.||.|||.|.||.|||||..||||.||.||.|||||
BPUM_2046___r 859 GTGAAACAGGTGAACCTAGATTTAGTCGATGAAATTGGATATAGAGCCGT 908
BSNT_03441___ 906 ATCAATCGGATTTCCGATCTTTACACTCGGCGCGCTGATCTTTGCAATGA 955
.||.||.||.||.||..|.|||.|..|.||||.|||.||.||||||||||
BPUM_2046___r 909 TTCCATTGGTTTCCCTGTATTTGCGTTAGGCGGGCTCATTTTTGCAATGA 958
BSNT_03441___ 956 TTTGGGCTCAGCTTGCGTGGACCAGGTTTTGGGGCTGGGACCCTAAGGAA 1005
|.|||||.||..||||.|||||..||||.||||||||||||||.||||||
BPUM_2046___r 959 TCTGGGCGCAAATTGCATGGACTCGGTTCTGGGGCTGGGACCCGAAGGAA 1008
BSNT_03441___ 1006 GTATGGGCGCTGATCACATTTTTGTTCTATGCCGCTTACTTGCATTTAAG 1055
||||||||..|||||||.|||.|.||.|||||.||.|||.|.|||.|..|
BPUM_2046___r 1009 GTATGGGCATTGATCACGTTTCTCTTTTATGCAGCCTACCTTCATCTTCG 1058
BSNT_03441___ 1056 ACTGTCAAGAGGCTGGCACGGTGAGAAGTCAGCATGGCTGGCCGTAATCG 1105
..|.|||||.||||||||.||.||.|||||.||.|||.|.||.||.||||
BPUM_2046___r 1059 CTTATCAAGGGGCTGGCATGGCGAAAAGTCCGCTTGGTTAGCTGTCATCG 1108
BSNT_03441___ 1106 GTTTTGCTATTATTATGTTTAATTTAATATTCGTAAATCTTGTGCTTGCC 1155
|.||.||.||.||||||||||||.|.||.||.||.|||||.|||.||||.
BPUM_2046___r 1109 GATTCGCCATCATTATGTTTAATCTCATCTTTGTCAATCTCGTGATTGCA 1158
BSNT_03441___ 1156 GGACTTCATTCTTATGCATAG 1176
||.||||||||.||.||.||.
BPUM_2046___r 1159 GGGCTTCATTCATACGCGTAA 1179
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