Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03433 and BPUM_2039
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:57
# Commandline: needle
# -asequence dna-align/BSNT_03433___serA.1.24716.seq
# -bsequence dna-align/BPUM_2039___serA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03433___serA-BPUM_2039___serA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03433___serA-BPUM_2039___serA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03433___serA
# 2: BPUM_2039___serA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1602
# Identity: 1217/1602 (76.0%)
# Similarity: 1217/1602 (76.0%)
# Gaps: 51/1602 ( 3.2%)
# Score: 4448.0
#
#
#=======================================
BSNT_03433___ 1 ATGTTTCGAGTATTGGTCTCAGACAAAATGAGCAACGACGG---TTTACA 47
|||||||||||.||.||||||||.||.||||||||.||||| ||||
BPUM_2039___s 1 ATGTTTCGAGTTTTAGTCTCAGATAAGATGAGCAATGACGGTCTTTTA-- 48
BSNT_03433___ 48 GCCACTTATTGAATCAGACTTTATTGAAATCGTTCAAAAAAACGTAGCAG 97
||||||.|.||||||||.|||.|||||||.||.||||||||.|||.|||
BPUM_2039___s 49 -CCACTTTTAGAATCAGATTTTGTTGAAATTGTCCAAAAAAATGTAACAG 97
BSNT_03433___ 98 ATGCAGAAGATGAATTACATACTTTTGATGCTCTT--TTGGTGCGAAGTG 145
|.|||||||||||||||||.||.|||||||| ||| || ||..||||||
BPUM_2039___s 98 AAGCAGAAGATGAATTACACACATTTGATGC-CTTACTT-GTCAGAAGTG 145
BSNT_03433___ 146 CGACAAAAGTAACAGAAGACCTTT-TCAACAAAATGACTTCTTTAAAAAT 194
||||.|||||.||..||||.|||| |.|| ||.||||||||.||||||||
BPUM_2039___s 146 CGACGAAAGTGACCAAAGAGCTTTATGAA-AAGATGACTTCATTAAAAAT 194
BSNT_03433___ 195 TGTCGGAAGAGCCGGTGTCGGTGTCGATAATATCGATATTGATGAGGCTA 244
||||||..|.||.|||||.||.||.||.|||||.|||||.|||||.||.|
BPUM_2039___s 195 TGTCGGCCGTGCTGGTGTGGGAGTAGACAATATTGATATCGATGAAGCCA 244
BSNT_03433___ 245 CGAAACACGGGGTAATCGTGATCAATGCTCCGAACGGCAACACCATTTCG 294
|.||.||.||.||.||.|||||||||||.||.|||||.||.||.||.||.
BPUM_2039___s 245 CCAAGCATGGTGTCATTGTGATCAATGCACCAAACGGTAATACGATCTCT 294
BSNT_03433___ 295 ACAGCTGAGCATACATTTGCAATGATATCTTCTTTAATGAGACACATTCC 344
||||||||||||||||||||.|||||.|||||..|.|||.|.||.|||||
BPUM_2039___s 295 ACAGCTGAGCATACATTTGCGATGATCTCTTCGCTTATGCGTCATATTCC 344
BSNT_03433___ 345 GCAGGCTAATATCTCAGTGAAATCCAGAGAGTGGAACCGCACAGCTTATG 394
.||.||.||.||.||.||.|||||.|.|||.||||||.|....||.||||
BPUM_2039___s 345 ACAAGCCAACATTTCTGTAAAATCAAAAGAATGGAACAGAGGTGCATATG 394
BSNT_03433___ 395 TCGGTTCAGAGCTTTATGGAAAAACGCTTGGTATTGTAGGATTAGGCCGA 444
|.|||.|.|||||||||||||||.|.|||||.|||||.|||.|.||..||
BPUM_2039___s 395 TTGGTGCCGAGCTTTATGGAAAATCTCTTGGGATTGTTGGACTTGGTAGA 444
BSNT_03433___ 445 ATCGGAAGTGAAATTGCACAGCGTGCGAGAGCATTCGGTATGACTGTGCA 494
||||||||.|||||.||.||.||.||.||||||||.||.|||||.||..|
BPUM_2039___s 445 ATCGGAAGCGAAATCGCCCAACGCGCAAGAGCATTTGGCATGACAGTCAA 494
BSNT_03433___ 495 CGTTTTTGATCCTTTCTTAACGGAAGAAAGAGCGAAAAAAATCGGCGTAA 544
|||.|||||||||||..|.||..|.|||.|.||..|||||||||||||.|
BPUM_2039___s 495 CGTATTTGATCCTTTTCTGACAAAGGAACGTGCAGAAAAAATCGGCGTCA 544
BSNT_03433___ 545 ACAGCCGTA-CATTTGAAGAAGTGCTTGAAAGT-GCGGATATCATTACCG 592
| .|||..| ||.||||.|||||.||.| |||| .|.|||||.||.||.|
BPUM_2039___s 545 A-TGCCAAATCACTTGATGAAGTACTCG-AAGTATCAGATATTATCACTG 592
BSNT_03433___ 593 TTCACACGCCTTTAACAAAAGAAACAAAAGG-CTTATTGAATAAAGAAAC 641
|.||.||.||.||||||||||||||||.||| |||.|| |||||||||||
BPUM_2039___s 593 TACATACCCCATTAACAAAAGAAACAAGAGGACTTCTT-AATAAAGAAAC 641
BSNT_03433___ 642 GATTGCAAAAACGAAAAAAGGCGTTCGCTTAATTAACTGTGCGCGAGGCG 691
.|||||||||||||||||||||||||||.||.|.||||||||.||.||.|
BPUM_2039___s 642 AATTGCAAAAACGAAAAAAGGCGTTCGCCTAGTGAACTGTGCACGCGGTG 691
BSNT_03433___ 692 GAATTATCGATGAAGC-AGCACTTCTCGAAGCTTTGGAAAACGGGCATGT 740
|.||.||.|||| ||| .|..|||||.|||||..|.||||.|||.|||||
BPUM_2039___s 692 GTATCATTGATG-AGCGTGACCTTCTTGAAGCGCTTGAAAGCGGTCATGT 740
BSNT_03433___ 741 TGCGGGAGCGGCGCTTGACGTTTTCGAAGTTGAACCGCCAGTTGACAATA 790
|||.|||||.||.||.||.||.||.|||||.|||||.||...|||.|||.
BPUM_2039___s 741 TGCAGGAGCTGCACTCGATGTATTTGAAGTAGAACCTCCTACTGATAATC 790
BSNT_03433___ 791 AACTTGTTGATCATCCATTAGTCATTGCCACTCCTCACTTGGGAGCATCA 840
..|||||.||.|||||..|.||||||||.|||||.|||.|.||.|||||.
BPUM_2039___s 791 CGCTTGTAGACCATCCGCTTGTCATTGCAACTCCGCACCTTGGCGCATCG 840
BSNT_03433___ 841 ACGAAAGAAGCACAGCTCAATGTCGCCGCCCAAGTGTCAGAAGAAGTTCT 890
|||||.||||||||..|.|||||.||.||.|||||.||.||||||||.||
BPUM_2039___s 841 ACGAAGGAAGCACAATTAAATGTAGCGGCACAAGTATCTGAAGAAGTACT 890
BSNT_03433___ 891 GCAGTTCGCAAAAGGCCTGCCTGTCATGTCAGCTATCAACCTGCCTGCCA 940
.||.||.||||||||.||.|||||.||||||.||||.|||||.||.||.|
BPUM_2039___s 891 TCAATTTGCAAAAGGACTCCCTGTGATGTCATCTATTAACCTACCAGCGA 940
BSNT_03433___ 941 TGACAAAGGATGAATTTGCTAAAATTAAACCCTACCATCAAATTGCAGGA 990
|||||||.||.||.||....||||||.||||.||.|||||..||||||||
BPUM_2039___s 941 TGACAAAAGACGAGTTCAAAAAAATTCAACCTTATCATCAGTTTGCAGGA 990
BSNT_03433___ 991 AAAATTGGCAGCCTTGTATCACAGTGCATGAAAGAACCAGTACAGGATGT 1040
|||.|.||..|.|||||.||.||.|..||||.||||||||||.|.||.||
BPUM_2039___s 991 AAACTCGGACGTCTTGTCTCTCAATCAATGAGAGAACCAGTAAAAGAAGT 1040
BSNT_03433___ 1041 TGCCAT-TCAATATGAAGGCACAATTGCTAAACTTGAAACATCGTTCATT 1089
.|.||| || .||.||||||.|.|||.|.|||||.||||||||.||.|||
BPUM_2039___s 1041 AGGCATCTC-TTACGAAGGCTCTATTTCAAAACTCGAAACATCCTTTATT 1089
BSNT_03433___ 1090 ACAAAAGCCCTTCTGTCAGGCTTTTTAAAACCGCGCGTTGACTCTACTGT 1139
||||||...|||||||||||||||||||||..|||.|||||.||.|||||
BPUM_2039___s 1090 ACAAAAAGTCTTCTGTCAGGCTTTTTAAAAGAGCGTGTTGATTCGACTGT 1139
BSNT_03433___ 1140 TAACGAGGTCAATGCCGG--GGGTGTCGCAAAAGAACGCGGCATCAGCTT 1187
.||.||.||||||||.|| .|||| |||||||||||||||||.|||||
BPUM_2039___s 1140 AAATGAAGTCAATGCTGGAATGGTG--GCAAAAGAACGCGGCATTAGCTT 1187
BSNT_03433___ 1188 CAGTGAAAAAATTTCCTCTTCTGAATCTGGATACGATAACTGCA--TCAG 1235
.||||||||.|||||.||....||||||||.|||||.|||.||| ||
BPUM_2039___s 1188 TAGTGAAAAGATTTCTTCCAGCGAATCTGGTTACGAAAACAGCATTTC-- 1235
BSNT_03433___ 1236 CGTA--AAAGTGACAGGAGACC--GCAGCACCTTTACTGTAACGGCTACG 1281
|| .||||.|.|||.||.| .|| |||||||||.|.|..||.||.
BPUM_2039___s 1236 --TATTGAAGTCAAAGGCGATCTTTCA--ACCTTTACTCTTAAAGCAACC 1281
BSNT_03433___ 1282 TATATTCCTCATTTCGGAGAACGAATTGTCGAGATCAATGGATTTAATAT 1331
||.||.||.|||||.||||||||..||||....||.||||||||||||||
BPUM_2039___s 1282 TACATCCCGCATTTAGGAGAACGCGTTGTTTCCATTAATGGATTTAATAT 1331
BSNT_03433___ 1332 TGATTTTTATCC-GACAGGTCACTTGGTGTATATCCAGCATCAAGATACA 1380
|||||||||||| || .||.|||.|.||.||.|||||||||...|||.||
BPUM_2039___s 1332 TGATTTTTATCCAGA-TGGACACCTTGTCTACATCCAGCATACTGATGCA 1380
BSNT_03433___ 1381 ACAGGTGTCATCGGCCGAGTAGGACGTATTCTCGGAGATAATGATATTAA 1430
.|.|||||.||.||....||.||||..|||.|.||.||..|||||.|.||
BPUM_2039___s 1381 CCTGGTGTAATTGGAAAGGTTGGACAAATTTTAGGCGACCATGATGTCAA 1430
BSNT_03433___ 1431 CATTGCAACCATGCAGGTTGGCCGTAAGGAAAAAGGCGGAGAAGCCATCA 1480
||||||.||.|||||.||.||.|||||.|||||||||||.||||||||||
BPUM_2039___s 1431 CATTGCGACAATGCAAGTAGGACGTAAAGAAAAAGGCGGCGAAGCCATCA 1480
BSNT_03433___ 1481 TGATGCTTTCCTTTGACAGACATCTGGAAGATAAAATTGTGAAAGAACTA 1530
||||||||||.||.||||..|||||.||.||..|||||||.||||||.||
BPUM_2039___s 1481 TGATGCTTTCTTTCGACAAGCATCTTGAGGACGAAATTGTCAAAGAATTA 1530
BSNT_03433___ 1531 ACAAATGTCCCTGATA----TTGTGTCCGTGAAGCTCATTGATCTGCCAT 1576
||..|.||.|..|||| ||.||||||| ||.||.||.|| ||
BPUM_2039___s 1531 ACCGAAGTACACGATATACTTTCTGTCCGT----CTGATCGACCT---AT 1573
BSNT_03433___ 1577 AA 1578
.|
BPUM_2039___s 1574 GA 1575
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