Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03418 and BPUM_2029
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:56
# Commandline: needle
# -asequence dna-align/BSNT_03418___gudB.1.24716.seq
# -bsequence dna-align/BPUM_2029___gudB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03418___gudB-BPUM_2029___gudB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03418___gudB-BPUM_2029___gudB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03418___gudB
# 2: BPUM_2029___gudB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1282
# Identity: 1022/1282 (79.7%)
# Similarity: 1022/1282 (79.7%)
# Gaps: 14/1282 ( 1.1%)
# Score: 4062.0
#
#
#=======================================
BSNT_03418___ 1 ATGGCAGCCGATCGAAACACCGGTCATACAGAAGAGGACAAACTTGATGT 50
|||||||||||||.||||.|||.|||||..|.|||.||.||.||.|||||
BPUM_2029___g 1 ATGGCAGCCGATCAAAACGCCGCTCATAACGCAGAAGATAAGCTAGATGT 50
BSNT_03418___ 51 ATTAAAATCAACCCAAACCGTAATACATAAGGCTCTGGAAAAATTGGGAT 100
.|||||.|||||.||||||||.||||||||.||.||.||.|||||.||.|
BPUM_2029___g 51 TTTAAAGTCAACTCAAACCGTCATACATAAAGCGCTAGACAAATTAGGTT 100
BSNT_03418___ 101 ATCCCGAAGAGGTATACGAATTGTTAAAAGAGCCGATGAGATTATTAACG 150
||||..||||.||.||.||||||.|.||.|||||.||..|..|||||||.
BPUM_2029___g 101 ATCCGCAAGAAGTGTATGAATTGCTGAAGGAGCCAATTCGTCTATTAACT 150
BSNT_03418___ 151 GTAAAAATACCTGTTCGTATGGACGACGGTTCAGTTAAGATTTTCACAGG 200
||.|||||.||.||.||.|||||.||.||.|||||.||||||||.||.||
BPUM_2029___g 151 GTGAAAATTCCAGTACGGATGGATGATGGATCAGTGAAGATTTTTACTGG 200
BSNT_03418___ 201 ATATCGTGCGCAGCACAATGACTCTGTCGGTCCAACGAAAGGCGGGATAC 250
.||.||.||||||||||||||..|||||||.||.||.||||||||.||.|
BPUM_2029___g 201 TTACCGCGCGCAGCACAATGATGCTGTCGGACCGACAAAAGGCGGTATTC 250
BSNT_03418___ 251 GTTTTCACCCGAATGTAACAGAAAAAGAGGTGAAGGCGCTTTCAATTTGG 300
||||.||||||||.||.||.||||||||.||.||.|||||||||||||||
BPUM_2029___g 251 GTTTCCACCCGAACGTTACTGAAAAAGAAGTAAAAGCGCTTTCAATTTGG 300
BSNT_03418___ 301 ATGAGTTTAAAATGCGGCATAATTGATCTTCCATATGGCGGTGGTAAAGG 350
||||||||||||||.||.||..|.||||||||.||||||||.||.|||||
BPUM_2029___g 301 ATGAGTTTAAAATGTGGTATTGTGGATCTTCCTTATGGCGGAGGAAAAGG 350
BSNT_03418___ 351 CGGAATTGTTTGTGATCCAAGGGATATGTCGTTTAGAGAGCTGGAGCGTC 400
|||.|||.|.|||||||||||.||.|||||.|||||||||||.||....|
BPUM_2029___g 351 CGGTATTATCTGTGATCCAAGAGAAATGTCATTTAGAGAGCTTGAAAAAC 400
BSNT_03418___ 401 TGAGCAGAGGGTATGTCAGAGCGATCAGCCAAATTGTCGGCCCGACAAAA 450
|.|||.|.||.|||||..|.||.|||||.|||||.||.||.||.||.|||
BPUM_2029___g 401 TAAGCCGTGGCTATGTTCGCGCAATCAGTCAAATCGTTGGTCCAACGAAA 450
BSNT_03418___ 451 GACGTGCCGGCACCGGATGTATTTACAAACTCACAAATCATGGCTTGGAT 500
||.||.||.|||||.|||||.|||||||||||.|||||.|||||.|||||
BPUM_2029___g 451 GATGTACCAGCACCAGATGTGTTTACAAACTCTCAAATTATGGCATGGAT 500
BSNT_03418___ 501 GATGGATGAGTATTCAAGAATTGATGAATTTAATTCGCCTGGATTTATTA 550
||||||.||.|||||.|||||.|||||||||||.|||||.||||||||||
BPUM_2029___g 501 GATGGACGAATATTCTAGAATGGATGAATTTAACTCGCCAGGATTTATTA 550
BSNT_03418___ 551 CAGGCAAACCGCTTGTGCTTGGCGGATCTCACGGGAGAGAATCTGCGACA 600
||||.|||||..||||.|||||.|||||.|||||..|.||..||||.|||
BPUM_2029___g 551 CAGGAAAACCAATTGTTCTTGGAGGATCACACGGACGTGATACTGCAACA 600
BSNT_03418___ 601 GCAAAAGGTGTTACCATCTGTATTAAAGAAGCGGCTAAGAAGAGAGGCAT 650
|||||||||||.||.|||||.||.|||||||||||.|||||.|.|||.||
BPUM_2029___g 601 GCAAAAGGTGTGACGATCTGCATCAAAGAAGCGGCGAAGAAAAAAGGAAT 650
BSNT_03418___ 651 CGATATTAAAGGTGCGCGTGTCGTTGTCCAAGGCTTCGGAAACGCGGGAA 700
.||.||.|..||.||.|||||.||.||.||.||.||||||||.||.||||
BPUM_2029___g 651 TGACATAAGCGGCGCACGTGTTGTCGTACAGGGATTCGGAAATGCAGGAA 700
BSNT_03418___ 701 GCTATTTGGCAAAATTTATGCATGATGCGGGGGCAAAAGTTGTCGGCATC 750
||||.|||||.|||||.|||.|||||||.||.||.|||.|.||.||.||.
BPUM_2029___g 701 GCTACTTGGCTAAATTCATGTATGATGCTGGAGCGAAAATCGTAGGAATT 750
BSNT_03418___ 751 TCAGATGCGTATGGCGGACTTTATGATCCGGAAGGCCTTGATATCGATTA 800
||||||||.||.|||||..|.||.|||..|||.||.||||||||.||.||
BPUM_2029___g 751 TCAGATGCTTACGGCGGGTTATACGATGAGGATGGTCTTGATATTGACTA 800
BSNT_03418___ 801 TTTACTCGACCGACGCGACAGCTTCGGTACCGTAACAAAGCTTTTCAACG 850
.||.||.||||||||.||||||||.||.|||||.||.||..|.||.||||
BPUM_2029___g 801 CTTGCTTGACCGACGTGACAGCTTTGGAACCGTGACTAAATTATTTAACG 850
BSNT_03418___ 851 ATACCATTACCAACCAAGAGCTGCTGGAGCTGGATTGTGATATTCTCGTT 900
|||||||.||.||||||||.|||||.|||||.|||||||||||..|.||.
BPUM_2029___g 851 ATACCATCACAAACCAAGAACTGCTTGAGCTCGATTGTGATATCTTAGTA 900
BSNT_03418___ 901 CCTGCTGCGATTGAAAATCAAATTACAGAAGAAAATGC-CCATAATATTC 949
|||||.||.|||||.||.|||||.||.|||||.||.|| .|| ||.|||.
BPUM_2029___g 901 CCTGCAGCCATTGAGAACCAAATCACTGAAGATAACGCGGCA-AACATTA 949
BSNT_03418___ 950 GGGCTAAAATTGTCGTTGAAGCAGCGAACGGACCAACAACGCTTGAAGGA 999
..||||||||||||||.|||||||||||.||.|||||.||.|||||||||
BPUM_2029___g 950 AAGCTAAAATTGTCGTGGAAGCAGCGAATGGCCCAACGACACTTGAAGGA 999
BSNT_03418___ 1000 ACAAAGATTCTTTCAGACCG-GGACATTCTGCTTGTACCAGACGTGCTGG 1048
|||||.|||||||||||.|| ||| .|.||||||||.||||||||.||.|
BPUM_2029___g 1000 ACAAAAATTCTTTCAGATCGTGGA-GTACTGCTTGTCCCAGACGTACTTG 1048
BSNT_03418___ 1049 CAAGTGCCGGTGGCGTAACAGTTTCTTATTTTGAATGGGTTCAGAATAAC 1098
|.|||||.|||||.|||||.||||||||.|||||||||||.|||||||||
BPUM_2029___g 1049 CGAGTGCGGGTGGTGTAACGGTTTCTTACTTTGAATGGGTGCAGAATAAC 1098
BSNT_03418___ 1099 CAAGGCTTCTACTGGAGTGAAGAAGAGGTAGAAGAAAAA-----TTAGAA 1143
|||||.||||||||||.||||||.||.||.| ||| ||||||
BPUM_2029___g 1099 CAAGGGTTCTACTGGACTGAAGAGGAAGTCG-----AAACTCGTTTAGAA 1143
BSNT_03418___ 1144 AAAATGATGGTCAAATCATTTAACAATATTTATGAAATGGCTAACAACCG 1193
.|.||||||||.|||||||||||.|||||||||||||||||..|.||.||
BPUM_2029___g 1144 GATATGATGGTGAAATCATTTAATAATATTTATGAAATGGCGCAAAATCG 1193
BSNT_03418___ 1194 AAGAATTGACATGAGGCTCGCTGCATATATGGTCGGCGTTCGCAAAATGG 1243
..|.||.||.|||.|.||.||||||||.|||||||||||.||.|||||||
BPUM_2029___g 1194 CCGTATCGATATGCGTCTTGCTGCATACATGGTCGGCGTACGTAAAATGG 1243
BSNT_03418___ 1244 CTGAAGCTTCGCGTTTTAGAGGCTGGATATAA 1275
||||||||||.|||||.|||||||||||.|||
BPUM_2029___g 1244 CTGAAGCTTCTCGTTTCAGAGGCTGGATTTAA 1275
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