Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03411 and BPUM_2025
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:56
# Commandline: needle
# -asequence dna-align/BSNT_03411___ypeB.1.24716.seq
# -bsequence dna-align/BPUM_2025___ypeB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03411___ypeB-BPUM_2025___ypeB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03411___ypeB-BPUM_2025___ypeB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03411___ypeB
# 2: BPUM_2025___ypeB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1428
# Identity: 962/1428 (67.4%)
# Similarity: 962/1428 (67.4%)
# Gaps: 153/1428 (10.7%)
# Score: 3006.5
#
#
#=======================================
BSNT_03411___ 1 ATGATCAGAGGAATTTTAATCGCCGTGCTTGGTATTGCAATAGTCGGTAC 50
||||||||||||||.||.||.|||.|..|.||.|||||..|..||...||
BPUM_2025___y 1 ATGATCAGAGGAATATTGATTGCCATTTTAGGAATTGCTGTTATCTCAAC 50
BSNT_03411___ 51 AGGCTACTGGGGATACAAAGAACACCAGGAAAAAGACGCAGTTCTTCTTC 100
|||.||.|||||.||.|||||.||.||.||||||||||||||.|||.|.|
BPUM_2025___y 51 AGGTTATTGGGGCTATAAAGAGCATCAAGAAAAAGACGCAGTGCTTTTGC 100
BSNT_03411___ 101 ATGCTGAAAATAACTATCAGCGGGCGTTTCATGAGCTTACCTATCAGGTG 150
|.||.||.||||||||||||.||||.||.||.||..|.||.||.||.|||
BPUM_2025___y 101 ACGCAGAGAATAACTATCAGAGGGCCTTCCACGATTTAACGTACCAAGTG 150
BSNT_03411___ 151 GATCAGCTTCATGATAAAATCGGAACAACACTTGCCATGAACAGCCAAAA 200
||||||||.||.||.|||.|.|||.||||.|||||.||||||||||||..
BPUM_2025___y 151 GATCAGCTGCACGACAAACTTGGAGCAACGCTTGCGATGAACAGCCAATC 200
BSNT_03411___ 201 ATCACTGTCGCCTGCA-TTGATC-GATGTGTGGAGGATTACATCAGAAGC 248
.||..|.||.||.||| ||| | |||||.|||||.||..|.||||||||
BPUM_2025___y 201 GTCGATTTCACCAGCACTTG--CAGATGTATGGAGAATGTCTTCAGAAGC 248
BSNT_03411___ 249 TCATAACAGCGTCAGTCAGCTGCCGCTTACATTAATGCCGTTTAATAAAA 298
.|||||||..||.||||||||.|||||||||||||||||.|||||.||||
BPUM_2025___y 249 ACATAACAATGTGAGTCAGCTTCCGCTTACATTAATGCCTTTTAACAAAA 298
BSNT_03411___ 299 CTGAAGAGCTATTATCAAAGATCGGCGATTTCAGCTATAAAACGTCAG-- 346
|.|||||..|.||..|.||..||||.||.||.|||||.|||.|.||||
BPUM_2025___y 299 CGGAAGAATTTTTGGCGAATGTCGGAGACTTTAGCTACAAATCATCAGTG 348
BSNT_03411___ 347 ---------TCAGAGATTTGGACC--------AAAAGCCGCTTGATA-AA 378
||||| ||.||| ||||..||| | ||
BPUM_2025___y 349 AAATCCCTATCAGA----TGAACCGTTAAACAAAAATACGC-----ACAA 389
BSNT_03411___ 379 AACGAGTATACATCACTA----AATAAGCTATATCAGCAGTCCGAAGATA 424
|||.| .|||.|||.|| ||.|||| ||| .||||
BPUM_2025___y 390 AACCA--TTACGTCATTATATCAACAAGC---ATC----------TGATA 424
BSNT_03411___ 425 TACAAAATGAATTGCGTCATGTTCAGCACCTTGTCATGAGCAAAAACCTT 474
|.|||||.|||.||.|.||.||.|||||.||.|||.|.|.||||||..|.
BPUM_2025___y 425 TTCAAAACGAACTGAGACAAGTGCAGCATCTCGTCCTCAACAAAAATTTA 474
BSNT_03411___ 475 CGCTGGATGGACGTAGAAATGGCCCTGGCTTCTGACGA--AAAACAAAGT 522
...||||||||.||.||||||||.||.|||..||..|| .|||.|| |
BPUM_2025___y 475 AAATGGATGGATGTTGAAATGGCACTTGCTGATGGTGACCGAAAGAA--T 522
BSNT_03411___ 523 GATAATACGATTATCAACAGCTTTAAAACAGTCGAAAAAAATGTTGGTGC 572
|||||.||.||.||..||.|.||.|||||||||||.|.|||||..|.|||
BPUM_2025___y 523 GATAACACCATCATTGACGGGTTGAAAACAGTCGAGAGAAATGCAGATGC 572
BSNT_03411___ 573 ATTCTCCA-CTGGCACTGATCTTGGCCCGA-----GTTTC-ACCAGTACG 615
||| |.|| .||.| |||||.||.|||| ||.|| ||
BPUM_2025___y 573 ATT-TGCAGATGTC---GATCTCGGACCGACAAATGTGTCGAC------- 611
BSNT_03411___ 616 AAAAAAGAAG-AGAAA-----GGCTTCAGCCATCTGAAGGGAAAACAAAT 659
||||| ||||| ||||.||..|||.|.||.||||||.|.||
BPUM_2025___y 612 -----AGAAGCAGAAACACGTGGCTACAATCATTTAAAAGGAAAAAAGAT 656
BSNT_03411___ 660 TTCCGAACAGGAAGCAAAACAAATTGCTGAGCGCTTTGCCCCAGATGACA 709
|||..|..|.|||||.|.||..||.||..|||..||..|.||.|||.|
BPUM_2025___y 657 TTCAAAGAAAGAAGCGATACGCATAGCCCAGCAATTCACACCTGATCA-- 704
BSNT_03411___ 710 ATTATTCAA----TTAAAGTGGTAAAGAGCGGAAAAAAAACAAATCGCGA 755
||.|||| ||||.|||..|||.|||||||..|||||.|||||.||
BPUM_2025___y 705 --TAATCAACATTTTAAGGTGAGAAAAAGCGGAAGTAAAACCAATCGAGA 752
BSNT_03411___ 756 TGTATATAGC--ATCAGCATGAAAGACCCAGACCATAAAGCAGTGA---T 800
|||.||.||| |||| |||..|||.||.||...|||||| || |
BPUM_2025___y 753 TGTGTACAGCTTATCA--ATGTCAGATCCTGATAGTAAAGC---GAATTT 797
BSNT_03411___ 801 TTATATGGATATTAC-GAAGAAGGGCGGGCATCCGGTATACTTGATCCAA 849
.|||.|.||..|.|| ||| ||.||.||||||||.||.|||.|..|.|||
BPUM_2025___y 798 CTATTTAGACTTGACTGAA-AAAGGAGGGCATCCCGTTTACCTTCTTCAA 846
BSNT_03411___ 850 AACAGGGAAGTGAAAGATCAGAAAATCAGTTTAAATGACGGATC-GAACC 898
||..|.||.||.|||.|.|||||||||||||||||..|.|.||| ||| .
BPUM_2025___y 847 AATCGAGACGTAAAAAAACAGAAAATCAGTTTAAACCAAGCATCAGAA-A 895
BSNT_03411___ 899 GAGCGCTTGCA--TTTTTAAAGAAAAACGGATTTGAAACAGA-TGATTTG 945
.|||.|| || |||||||||||..|.||||||||..|||| |.|||
BPUM_2025___y 896 AAGCACT--CAGCTTTTTAAAGAAGCAAGGATTTGATGCAGAGTCATT-- 941
BSNT_03411___ 946 CAAATT-GATGAAAGTGCCCAATATGATAAAATCGGTGTATTTTCATATG 994
|.|.|| |||||||||||.||||.||||||.||||||||||||.|.||||
BPUM_2025___y 942 CCATTTAGATGAAAGTGCGCAATTTGATAATATCGGTGTATTTACCTATG 991
BSNT_03411___ 995 TTCCTGTTGAAAATAAAGTCCGGATGTACCCGGAGGCAATTCGTATGAAA 1044
|.||..|..||||.||.||.|.|.||||.||.||....|||||.|||||.
BPUM_2025___y 992 TACCACTACAAAAAAATGTACTGCTGTATCCAGATAGTATTCGCATGAAG 1041
BSNT_03411___ 1045 GTGGCCTTGGATGACGGTGAGGTTGTCGGCTTTTCAGCAAGAGACTTCCT 1094
||.||.||.|||||.||.||.||.||.||.||||||||||.|||||...|
BPUM_2025___y 1042 GTCGCATTAGATGATGGAGAAGTGGTTGGATTTTCAGCAAAAGACTATTT 1091
BSNT_03411___ 1095 CACATCTCACAGAAAAAGAACCAT------ACCTAAGCCTGCAATTACTG 1138
.||...|||.|.||.||||..||| |||||| |||..|..
BPUM_2025___y 1092 AACGAATCATAAAACAAGAGACATCAAAGCACCTAA------AATCTCAC 1135
BSNT_03411___ 1139 AAGCAGAGGCAAAGTCTAAATTAAATAAAAATGT-ACAAGTGAGAGAAA- 1186
||..|||.||.|||...|.|.|.|||.|..|||| |.||..|| |||.|
BPUM_2025___y 1136 AAAAAGAAGCGAAGAAAACACTCAATCAGCATGTGAAAATCGA-AGATAC 1184
BSNT_03411___ 1187 -CAAGGCTCGC-TTTGATTACAAATGAACTAGGTC--AAGAAGTGTTATG 1232
||.| |.|| .||| ||..|||.|| ||.||| |||||||.|||||
BPUM_2025___y 1185 TCATG--TGGCGATTG-TTCAAAACGA--TATGTCAGAAGAAGTTTTATG 1229
BSNT_03411___ 1233 TTACGAAATGCTTGGAACAATTGAAAATGACACATTCAGAATGTATATCA 1282
.||.||..|.||||||||.||..|||||||.||.|.|.||||||..||.|
BPUM_2025___y 1230 CTATGAGTTCCTTGGAACGATAAAAAATGATACGTACCGAATGTTCATTA 1279
BSNT_03411___ 1283 ATGCCAAAGACGGAT--CGGAAGAAAAG-----GTTGAAAAACTAAAAAA 1325
||| ||||| |||||.|.||| ||.||.|||||||||||
BPUM_2025___y 1280 ATG-------CGGATACCGGAAAAGAAGAACGAGTAGATAAACTAAAAAA 1322
BSNT_03411___ 1326 TGCAGAACCTATATATAAAGACCTATAA 1353
.||||||||||||||||||||||||||.
BPUM_2025___y 1323 CGCAGAACCTATATATAAAGACCTATAG 1350
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