Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03409 and BPUM_2024
See
Amino acid alignment /
Visit
BSNT_03409 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:56
# Commandline: needle
# -asequence dna-align/BSNT_03409___ypfA.1.24716.seq
# -bsequence dna-align/BPUM_2024___ypfA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03409___ypfA-BPUM_2024___ypfA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03409___ypfA-BPUM_2024___ypfA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03409___ypfA
# 2: BPUM_2024___ypfA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 793
# Identity: 401/793 (50.6%)
# Similarity: 401/793 (50.6%)
# Gaps: 284/793 (35.8%)
# Score: 813.5
#
#
#=======================================
BSNT_03409___ 1 ATGATAGAGATTGGAGAAACTGTACT-----TTTAGAATATAT-----AG 40
|||.||.|.||.||.|| ||.|.| || ||||||.| ||
BPUM_2024___y 1 ATGTTACAAATAGGGGA---TGCAATCACAATT--GAATATGTCAATGAG 45
BSNT_03409___ 41 AAGAAAATGAATTGAAAAAGGCAAAAAGCAAGGCGGTCAGCATCGAA--- 87
||.||| |||.||||||..||||| ||||||
BPUM_2024___y 46 AACAAA--GAAGTGAAAACTGCAAA----------------ATCGAAAGT 77
BSNT_03409___ 88 -------------AACAATGAACT-TTTG-----ATCGCGTATCCTGTTG 118
|||.||| || |||| || |||||.|.||
BPUM_2024___y 78 TTTGGAAAATAATAACGATG--CTATTTGCATTAAT----TATCCAGCTG 121
BSNT_03409___ 119 ATGTAGTTACAGGGCGAACTGTGAT---TTT----------ACATAA--- 152
||..||..||.||.||.|| ||| ||| |||.||
BPUM_2024___y 122 ATAAAGAAACGGGACGCAC---GATCTATTTGAACCAGCAAACAGAAATC 168
BSNT_03409___ 153 --CGAT----------ATGGAAGT-------------AATGGTAGAGTTT 177
||.| |||.|||| |||
BPUM_2024___y 169 ACCGTTTTCTTTTTCGATGAAAGTCAAATTCCATACAAAT---------- 208
BSNT_03409___ 178 GTGGGAAAAGACGAAGTTCCTTATCGCTTTATAAGCCGTATAA-AAGGTA 226
|.|.||| ||||| |.|||| || || ||| |
BPUM_2024___y 209 ---GCACAAG-CGAAG----TCATCG--------GC-----AAGAAG--A 235
BSNT_03409___ 227 AAGTGAAGGACAAACTTCAAATGATCTGTC-TTGAAGTGCCTCCA---CG 272
|| |||| |..|||..|||||| ||| || |||| ||
BPUM_2024___y 236 AA--GAAG----ATATTCCGATGATC-GTCATT--------TCCATTCCG 270
BSNT_03409___ 273 TGAAAAAATGAAAAGAATC-----CAGCGCCGCCAATATGTAAGAACTGA 317
..||||.|.||||.||.|| |||||..|..|||||.|.|||
BPUM_2024___y 271 CCAAAAGAAGAAATGATTCGACTTCAGCGGAGAGAATATCTGAGA----- 315
BSNT_03409___ 318 TGCCG-TATTAGATGTGCAAATTCAGCCG-------GGAAA----TGAAG 355
|.|| ||.| |||..||| ||||| |.||| |||||
BPUM_2024___y 316 -GTCGATACT--ATGGTCAA----AGCCGCGATCACGCAAACGGGTGAAG 358
BSNT_03409___ 356 AAGAGATCC---GCACAC-TATCTTAT-AACATCAGTGCAGGCGGCATCG 400
| |||| | |||| |.|.||.| ||.||.|||||.||||||.|.|
BPUM_2024___y 359 A----ATCCTTTG-ACACGTTTATTGTCAATATGAGTGCTGGCGGCTTAG 403
BSNT_03409___ 401 CCGTGGTTTTAGCTGATGGCCTTTCTTTTCAA----TCGGGGGA---ATC 443
||.|.|.|.|..||||.||..|.||.||..|| .|||.|.| |||
BPUM_2024___y 404 CCATTGCTGTTCCTGAAGGTGTCTCATTGAAAGAAGACGGAGAAGTGATC 453
BSNT_03409___ 444 ATTGCGCCTGATCATCCGTCTTCCTG-AAGAGGAGCACACACGTCAAA-- 490
|..|.|..|||.|.|||| ||| ||||| |..||||||
BPUM_2024___y 454 ACAGAGTTTGAACTTCCG-----CTGAAAGAG-------CCTGTCAAAAT 491
BSNT_03409___ 491 TAGAAACAGAAGCAGTTGTCAGA-------CGAATCTTT---AATGACCC 530
|| ||||.|||| |||| |||.|||.| .||||.|
BPUM_2024___y 492 TA-------AAGCGGTTG-CAGAGATGAGCCGAGTCTATCAAGATGAGC- 532
BSNT_03409___ 531 CAAGTCAGG-AAAACGCAAA-----ATGACTTTAGAGTATTCAGA----- 569
||.|.|| ||||| || ||.| |.||||.|||.||
BPUM_2024___y 533 --AGACTGGTAAAAC---AAGAGCGATCA---TGGAGTTTTCTGAGATCT 574
BSNT_03409___ 570 -AATTG--CAGCAGGTGACCAGCAGGCTTTGCTTCAA-TACTGCATCCGG 615
||.|| |||||| |||||...|.|| || ||||||.|||.|
BPUM_2024___y 575 CAAATGATCAGCAG-----CAGCACATTATG----AAGTACTGCTTCCAG 615
BSNT_03409___ 616 CGCCAG---TTAA-ATAAGAGAAGAAAGGCCCGAATGGAATAA 654
|..||| |||| |...|.|||.||| |.||||
BPUM_2024___y 616 CAGCAGCTTTTAACACGTGTGAAAAAA----------GCATAA 648
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.