Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03403 and BPUM_2020
See
Amino acid alignment /
Visit
BSNT_03403 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:55
# Commandline: needle
# -asequence dna-align/BSNT_03403___ypgA.1.24716.seq
# -bsequence dna-align/BPUM_2020___fni.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03403___ypgA-BPUM_2020___fni.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03403___ypgA-BPUM_2020___fni.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03403___ypgA
# 2: BPUM_2020___fni
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1143
# Identity: 747/1143 (65.4%)
# Similarity: 747/1143 (65.4%)
# Gaps: 168/1143 (14.7%)
# Score: 2280.0
#
#
#=======================================
BSNT_03403___ 1 GTGACTCGAGCAGAACGAAAAAGACAACACATCAATCATGCCTTGTCCAC 50
.||||.|||||||||.||||.|.|||.||.||..|.||||||||||||||
BPUM_2020___f 1 TTGACGCGAGCAGAAAGAAAGAAACAGCATATTGAACATGCCTTGTCCAC 50
BSNT_03403___ 51 CGGCCAG-AAGCGGGAAACAGGTCTTGATGATATTACGTTTGTTCACGTC 99
.||.||| |.|| .|||||||||.|..|.|||.||.|.||.|||||||||
BPUM_2020___f 51 TGGACAGCATGC-AGAAACAGGTTTAAAAGATGTTTCCTTCGTTCACGTC 99
BSNT_03403___ 100 AGTCTGCCCGATCTTGCATTAGA----ACAAGTAGATATTTCC----ACG 141
.||.|.||.|||||||| || ||||.|.|||| | ||.
BPUM_2020___f 100 GGTTTACCAGATCTTGC----GACATCACAAATTGATA----CACATACA 141
BSNT_03403___ 142 AAAATCGGCG----AACTTTCAAGCAGTTCGCCGATTTTTATCAATGCAA 187
|.|||.|||| .||||| |.|||||||.||||||||||||||||
BPUM_2020___f 142 ACAATTGGCGGACTGACTTT----CGGTTCGCCAATTTTTATCAATGCAA 187
BSNT_03403___ 188 TGACTGGCGGCGGCGGAAAACTTACATATGAGATTAATAAATCGCTTGCG 237
||||||||||.|||||||||...||.|||||| ||||||||||
BPUM_2020___f 188 TGACTGGCGGGGGCGGAAAATCGACCTATGAG----ATAAATCGCT---- 229
BSNT_03403___ 238 CGAGCGGC-TTATCA-------GGCTGGA-------ATTCCCCTTGCTGT 272
| |||||| .|..||| |||||..|.||.||
BPUM_2020___f 230 -------CTTTATCAATCGCAGCGAAGGAAACCAATATTCCGGTGGCAGT 272
BSNT_03403___ 273 GGGATCGCAAATGTCAGCATTAAAAGATCCATCAGAGCGTC-TATCCTAT 321
.|||||.||||||.|.||..||||||||..|..|||..|.| || |.|||
BPUM_2020___f 273 TGGATCACAAATGGCTGCGCTAAAAGATAAAGAAGAAAGACGTA-CGTAT 321
BSNT_03403___ 322 GAAATTGTTCGAAAGGAAAACCCAAACGGGCTGATTTTTGCCAACCTGGG 371
|||.||||||||||.|..||||||||.||..|..|.|||||.||..|.||
BPUM_2020___f 322 GAAGTTGTTCGAAAAGTGAACCCAAATGGAATTGTCTTTGCGAATTTAGG 371
BSNT_03403___ 372 AAGCGAGGCAACGGCTGCT----CAGGCAAAGGAAGCTGTTGAGATGATT 417
.||.|||||||| |.| ||.||.||||||||.||||||||| .|
BPUM_2020___f 372 CAGTGAGGCAAC----GATCAAACAAGCGAAGGAAGCAGTTGAGATG-CT 416
BSNT_03403___ 418 GGAG--CAA-ACGCACTGCAGATCCACCTCAATGTGATTCAGGAAATTGT 464
|||| ||| |.| ||.|||||.||..|.|||||||||||.||.|||||
BPUM_2020___f 417 GGAGGCCAATATG--CTCCAGATTCATTTAAATGTGATTCAAGAGATTGT 464
BSNT_03403___ 465 GATGCCTGAAGGAGACAGAAGCTTT-AGCGGCGCACTGGAACGTATTGAA 513
.|||||||||||||||.| .|.||| ||.||.|||||.||.||.||.|.|
BPUM_2020___f 465 CATGCCTGAAGGAGACCG-TGATTTCAGGGGGGCACTTGAGCGCATCGCA 513
BSNT_03403___ 514 --------CAAATTTGCAGTCATGTCAGTGTACCAGTCATTGTGAAAGAA 555
|.||| |||| || ||||.||.||..|.||.||||||
BPUM_2020___f 514 GCTATCGCCGAAT---CAGT--TG---GTGTGCCTGTTGTCGTAAAAGAA 555
BSNT_03403___ 556 GTCGGATTCGGTATGAGCAAAGAATCAGCAGGAAAGCTGTATGAAGCTGG 605
||.|||||.|||||||||||.|||.|.||...||||.|.|.|.|.|||||
BPUM_2020___f 556 GTTGGATTTGGTATGAGCAAGGAAACGGCCAAAAAGTTATTTCATGCTGG 605
BSNT_03403___ 606 TGCTGCAGCTGTTGACATTGGCGGTTACGGAGGGACAAATTTCTCGAAAA 655
.|.|||.||.|||||.||.||.||.|..||.||.||.||.||.||.||.|
BPUM_2020___f 606 GGTTGCTGCCGTTGATATAGGGGGATTTGGTGGTACGAACTTTTCTAAGA 655
BSNT_03403___ 656 TCGAAAATCTCCGAAGACAGCGGAAAATCTCCT-----TTTTTAACTC-G 699
||||||||||.|| |.||..||||.|||.| ||||.| || .
BPUM_2020___f 656 TCGAAAATCTTCG----CCGCCAAAAAGCTCTTCATTATTTTGA--TCAA 699
BSNT_03403___ 700 TGGGGCATTTCGACAGCTGCCAGTTTGGCGGAA----ATCCGCTCTGAG- 744
|||||.|||.|.||.||.||.|||.|.||.||| ||.| .||
BPUM_2020___f 700 TGGGGGATTCCAACTGCAGCGAGTCTTGCTGAAGTACATAC-----AAGT 744
BSNT_03403___ 745 TTTCCTG--CAAGCACCATGATCGCCTCTGGCGGTCTGCAAGATGCACTT 792
|||||.| ||| ||..|..|.|||||.||.|||.|.|||||.||.|||
BPUM_2020___f 745 TTTCCAGACCAA--ACGGTTTTAGCCTCGGGAGGTATACAAGACGCCCTT 792
BSNT_03403___ 793 GACGTGGCAAAGGCAATTGCGCTTGGGGCCTC--TTGCACCGGAATGG-- 838
||.||..||||..|||||||.|||||.||.|| .||| |||
BPUM_2020___f 793 GATGTCACAAAATCAATTGCTCTTGGCGCATCCGCTGC-------TGGTC 835
BSNT_03403___ 839 CAG--GGCATTTT-TTAAAAGCGCTGACTGACAGTGGTGAGGAAGGACTG 885
.|| |||.|||| ||||||.|.|||||||||.||||.||..||||.||.
BPUM_2020___f 836 TAGCTGGCTTTTTCTTAAAATCACTGACTGACGGTGGGGAAAAAGGTCTC 885
BSNT_03403___ 886 CTTGAGGAGATTCAGCT-GATCCTT---GAGGAATTAAAGATGATTATGA 931
.|.|..||.|| |.| ||| ||| ||.||..|.||||||||.||||
BPUM_2020___f 886 ATCGCAGATAT---GATAGAT-CTTCAAGAAGATGTGAAGATGATGATGA 931
BSNT_03403___ 932 CCGTGCTGGGCGCCAGAACGATTGACGATTT---ACAAAAGGCGCCCC-- 976
|.||.||.|||||.|..||.|||||.||..| ||||| |||
BPUM_2020___f 932 CAGTCCTTGGCGCGAAGACCATTGAAGAACTGAGACAAA------CCCAA 975
BSNT_03403___ 977 -TTGTGATCAAAGGTGAAACCCATCATTGGCTCACAGAGAGAGGGATCAA 1025
|.||.||...||||||.||...|||||||||||.|||.|||||.|||.|
BPUM_2020___f 976 GTAGTCATTTCAGGTGATACAAGTCATTGGCTCAAAGAAAGAGGCATCGA 1025
BSNT_03403___ 1026 TACATCAAGCTATAGTGTGCG-----ATAA------------- 1050
.|||.|...|||||||||..| ||||
BPUM_2020___f 1026 CACAACGTACTATAGTGTAAGAACAAATAAGAAAAAGGGTTAA 1068
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.