Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03399 and BPUM_2018
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:55
# Commandline: needle
# -asequence dna-align/BSNT_03399___yphA.1.24716.seq
# -bsequence dna-align/BPUM_2018___yphA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03399___yphA-BPUM_2018___yphA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03399___yphA-BPUM_2018___yphA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03399___yphA
# 2: BPUM_2018___yphA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 705
# Identity: 380/705 (53.9%)
# Similarity: 380/705 (53.9%)
# Gaps: 207/705 (29.4%)
# Score: 849.5
#
#
#=======================================
BSNT_03399___ 1 ATGGAACAATTTTATTACTATTGGTCAATGTGGTTTCTGTGGGTTCTGAC 50
.|||||...||.||.||.||||||||.||.|||||..|.|||.||.|...
BPUM_2018___y 1 TTGGAAGCTTTGTACTATTATTGGTCCATATGGTTCGTTTGGATTATCGT 50
BSNT_03399___ 51 AACATTTATTTTTGAAAAGACGAA----AAGACGAA------TTGCCGTC 90
.|||||||||.|.||||| || |.|.||.| |.|.|.||
BPUM_2018___y 51 GACATTTATTATGGAAAA----AAGCTTATGGCGCAATGTGTTAGGCATC 96
BSNT_03399___ 91 TCTGTCTTTATTTTAACTAATATTAT-TCTAAGCA-TACATGACATCGCT 138
|.|||..||.| ..||||||| |.||..|| |.|||||.|||
BPUM_2018___y 97 TGTGTTCTTGT------CCATATTATATGTAGTCATTTCATGATATC--- 137
BSNT_03399___ 139 TTATATTTTTC-----CCTGAATGTTGCATATTTGATG---TTTTT---- 176
.||.|||..| ||||||||..|..||||||||| |||||
BPUM_2018___y 138 -CATGTTTGACATGAGCCTGAATGCGGGGTATTTGATGACCTTTTTATAT 186
BSNT_03399___ 177 -CGTTTGC-GGATGTG-TCTATGCCGGGTATTTGGGAAT----------G 213
|.|.||| ||.|.|| |||||||||| |.|||..|| |
BPUM_2018___y 187 GCATGTGCAGGTTTTGTTCTATGCCGG---TCTGGTCATCAAATAATGAG 233
BSNT_03399___ 214 TATCGTTTTCGTTAC-ATCATGGTCTATCTGACGCTCGTTG-CCGCGTAT 261
.||| .||| ||.|.|.||||| |.|| .|||.|||
BPUM_2018___y 234 AATC-------ATACAATTAGGTTCTAT---------GGTGAGCGCATAT 267
BSNT_03399___ 262 GCGTTTGTTTAT-CTTTTTGCATTATATGACCCGGTTTGGTTCA---TCA 307
||.||| ||||| .|||||||||||||||||||||||||||||| |.|
BPUM_2018___y 268 GCCTTT-TTTATGATTTTTGCATTATATGACCCGGTTTGGTTCACGCTAA 316
BSNT_03399___ 308 TAAAACCTGAGTGGG-----------CTGCTGTTATATTAATAGTGCTTT 346
|||||...||.|||| .||||| ||.||||| || ||||
BPUM_2018___y 317 TAAAAGTGGATTGGGTCGTATTTGCCTTGCTG--ATCTTAAT-GT-CTTT 362
BSNT_03399___ 347 TA-------ACAGCTTCTG-TTGAAAGGAATTTTGAGAAGCAGCT----- 383
.| ||| || ||..|||||| .||..||.||
BPUM_2018___y 363 GACATATGGACA-----TGATTTCAAGGAA-----CGAGTCACCTTATGG 402
BSNT_03399___ 384 ----TGTCTTATTTGTCCTAGGG---------ATGTGC-CAAGGCGA--- 416
|||| |||.||||.|.|.| |||.|| || |||
BPUM_2018___y 403 ATGATGTC-TATATGTCTTGGCGAAGCCCTTTATGCGCTCA---CGATTC 448
BSNT_03399___ 417 ACTG-GTGTATTCAT---TTGTGATCCAGAAGTTGGCCGGGGCTATGGCT 462
||.| .||...|||| ||||.|| ||.||.| ||
BPUM_2018___y 449 ACCGCCTGACATCATCGATTGTCAT--AGGAGAT--------------CT 482
BSNT_03399___ 463 GTCGGCGGCTTTCAATGGCTGAATGCGTGTTCTGCGGGAATG----ATAT 508
.|| .||||..|..|| ||||.|.| ||.| ||.|
BPUM_2018___y 483 CTC-----TTTTCTGTCCCT-------TGTTGTTC---AAGGGTCCATCT 517
BSNT_03399___ 509 TGCTGTTTGGCATATCTAAATACGAACACCTCGCAA-----------GCC 547
|.||.||.||..| |||.||.||.|.|| |||
BPUM_2018___y 518 TCCTATTAGGTGT---------CGATCAGCTTGAAAAGCTCTTGAACGCC 558
BSNT_03399___ 548 AGATTGGTC-AGAAAAGCAAAAGATCAAACAAAGGAGCTACCAAAAT-GT 595
.| ||..|| ||||||.||..| |||||.||| .|||||| ..
BPUM_2018___y 559 CG-TTCATCAAGAAAACCAGTA--------AAAGGGGCT-GCAAAATCAA 598
BSNT_03399___ 596 CATGA 600
|||||
BPUM_2018___y 599 CATGA 603
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