Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03394 and BPUM_2014
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:55
# Commandline: needle
# -asequence dna-align/BSNT_03394___gpsA.1.24716.seq
# -bsequence dna-align/BPUM_2014___gpsA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03394___gpsA-BPUM_2014___gpsA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03394___gpsA-BPUM_2014___gpsA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03394___gpsA
# 2: BPUM_2014___gpsA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1058
# Identity: 754/1058 (71.3%)
# Similarity: 754/1058 (71.3%)
# Gaps: 40/1058 ( 3.8%)
# Score: 2523.0
#
#
#=======================================
BSNT_03394___ 1 ATGAAAAAAGTCACAATGCTTGGAGCAGGGAGTTGGGGAACAGCACTGGC 50
|||||.|||.|.|||.|.|||||||||||.||.|||||||||||.||.||
BPUM_2014___g 1 ATGAAGAAAATTACAGTACTTGGAGCAGGAAGCTGGGGAACAGCGCTTGC 50
BSNT_03394___ 51 TTTAGTTCTAACTGATAATGGAAATGAAGTGTGT----GTGTGGGCTCAC 96
|.|.||..||.||||||||....|||| ||| .||||||..||.
BPUM_2014___g 51 TCTTGTATTAGCTGATAATCATCATGA----TGTACACATGTGGGGACAT 96
BSNT_03394___ 97 CGTGCAGATTTAATTCATCAAATTAATGAGTTGCATGAAAACAAAGATTA 146
.|...|||..|.|||.|.|||||..|||||...||||||||..|.|||||
BPUM_2014___g 97 AGACAAGAGCTCATTGACCAAATCGATGAGAAACATGAAAATCATGATTA 146
BSNT_03394___ 147 TTTGCCGAATGTTAAGCTGTCTACATCCATTAAAGGAACAACAGATATGA 196
.|||||.|||||....|||.|..|.||.||.||.|..||.|||||.||||
BPUM_2014___g 147 CTTGCCAAATGTCGCACTGCCAGCGTCTATCAAGGCGACGACAGACATGA 196
BSNT_03394___ 197 AAGAGGCTGTTTCAGACG---CAGATGTCATTATCGTTGCGGTCCCGACA 243
|..|||| ||| |||.| ||||.|..|||||.||.||.||.||.|||
BPUM_2014___g 197 AGCAGGC-GTT--AGAGGGGACAGACGCTATTATTGTCGCTGTACCTACA 243
BSNT_03394___ 244 AAAGCAATTCGGGAAGTGCTGAGACAGGC---TGTCCCTTTTATAACG-- 288
||.||.|||||.||||||.|||..|.||| ||..| |.||.|||
BPUM_2014___g 244 AAGGCCATTCGTGAAGTGTTGAAGCGGGCAAATGAGC---TGATCACGTC 290
BSNT_03394___ 289 AAAAAGGCAGTCTTTGTTCATGTCAGCAAGGGTATTGAGCCAGATTCACT 338
||||..||.| |||||||||||.||.||.||.|||||.||||||.||||
BPUM_2014___g 291 AAAAGTGCCG--TTTGTTCATGTAAGTAAAGGGATTGAACCAGATACACT 338
BSNT_03394___ 339 TCTGCGCATTTCTGAAATTATGGAAATTGAGCTCCCGAGTGATGTCAGAA 388
||||.|.||.|||.||||.||.|||...||..|||| .||.| ||||
BPUM_2014___g 339 TCTGAGAATATCTCAAATGATTGAACAAGAAGTCCC---AGACG--AGAA 383
BSNT_03394___ 389 AAGA-----TATCGTTGTCCTTTCCGGCCCGAGTCATGCGGAAGAAGTAG 433
|||| |.||||||||.|.||.||.|||||.||.||.||.|||||||
BPUM_2014___g 384 AAGAGAAGCTGTCGTTGTCTTATCAGGACCGAGCCACGCTGAGGAAGTAG 433
BSNT_03394___ 434 GGTTGCGGCACCCCACAACTGTTACTGCATCTTCA-AAGAGCATGAGGGC 482
|.|||||.||.||.||||||||.||||..||.||| ||.|...||| .||
BPUM_2014___g 434 GCTTGCGTCATCCGACAACTGTCACTGTTTCATCAGAAAATATTGA-AGC 482
BSNT_03394___ 483 AGCAGAAGAGGTGCAGGATCTATTTATTAATCACAATTTTCGGGTGTACA 532
|||..||...||.||.|||.|.||.||.||..||||.|||.|.||.||.|
BPUM_2014___g 483 AGCTCAATTTGTTCAAGATTTGTTCATGAACAACAACTTTAGAGTCTATA 532
BSNT_03394___ 533 CAAATCCTGACATTATCGGAGTTGAAATCGGAGGGGCTTTAAAAAATATT 582
||||.|||||..|.||.||.||.|||||.||.||.||..|.||||||||.
BPUM_2014___g 533 CAAACCCTGATGTGATTGGTGTAGAAATTGGCGGCGCACTGAAAAATATC 582
BSNT_03394___ 583 ATTGCCCTTGCTGCAGGAATTACAGATGGTTTAGGGTACGGCGACAATGC 632
|||||.|||||.||||||||.|||||.||..|.||.||.||.||||||||
BPUM_2014___g 583 ATTGCTCTTGCGGCAGGAATCACAGACGGGCTTGGATATGGTGACAATGC 632
BSNT_03394___ 633 CAAAGCTGCTTTGATTACACGCGGACTTGCCGAAATCGCGAGACTCGGAA 682
.|||||.||..|.||.||..|.|||||.||.||||||||..|.|||||.|
BPUM_2014___g 633 GAAAGCGGCGCTCATCACTAGAGGACTCGCTGAAATCGCACGTCTCGGTA 682
BSNT_03394___ 683 CGAAAATGGGCGGAAATCCCTTGACGTTCTCTGGATTGACAGGAGTAGGC 732
|..|||||||.||.|||||..||||.||..|.||.||.||.||.||.||.
BPUM_2014___g 683 CACAAATGGGAGGGAATCCTCTGACATTTGCCGGCTTAACGGGCGTTGGA 732
BSNT_03394___ 733 GATCTGATTGTGACGTGCACAAGTGTTCATTCCAGAAACTGGCG-TGCGG 781
|||.||||.|||||.||.||||||||||||||..|.|||||||| ||| |
BPUM_2014___g 733 GATTTGATCGTGACATGTACAAGTGTTCATTCACGTAACTGGCGCTGC-G 781
BSNT_03394___ 782 GCAATTTGCTCGGAAAAGGGTACAAGCTTGAAGATGTTCTTGAAGAGATG 831
|.|||.||||.||.||||||||.|||||||||||.||.|||||..|||||
BPUM_2014___g 782 GAAATCTGCTTGGTAAAGGGTATAAGCTTGAAGAAGTGCTTGAGAAGATG 831
BSNT_03394___ 832 GGAATGGTAGTCGAAGGCGTCCGCACGACGAAAGCGGCTTACCAGCTTTC 881
||.|||||.||.||||||||||||||.||.||||..|||||.|||||.||
BPUM_2014___g 832 GGGATGGTCGTTGAAGGCGTCCGCACAACAAAAGGCGCTTATCAGCTCTC 881
BSNT_03394___ 882 GAAGAAATATGATGTTAAAATGCCGATTACAGAAGCTCTCCATCAGGTCC 931
.||..||||..|.||.|..||||||||||||||.|||||..|.||.||||
BPUM_2014___g 882 CAAAGAATACAAAGTCAGCATGCCGATTACAGAGGCTCTTTACCACGTCC 931
BSNT_03394___ 932 T-ATTCAACGGACAAAAAGTGGAAACCGCTGTTGAATCTTTAATGGCGAG 980
| .||.||.||| ||||.|||||....|||||.|||||.||||||||..|
BPUM_2014___g 932 TGTTTGAAGGGA-AAAAGGTGGACGATGCTGTCGAATCATTAATGGCACG 980
BSNT_03394___ 981 AGGGAAAACCCACGAGATGGAGGATTTGGTAAATACGTTTGAAAATCAAG 1030
.|.||||||.||.||.|||||.||..|.||.||.|.||||||.||.|||.
BPUM_2014___g 981 TGTGAAAACACATGAAATGGAAGACCTTGTGAACATGTTTGAGAACCAAA 1030
BSNT_03394___ 1031 TGAAGTAA 1038
..||.|||
BPUM_2014___g 1031 CAAAATAA 1038
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