Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03381 and BPUM_2005

See Amino acid alignment / Visit BSNT_03381 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:54
# Commandline: needle
#    -asequence dna-align/BSNT_03381___hepT.1.24716.seq
#    -bsequence dna-align/BPUM_2005___hepT.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03381___hepT-BPUM_2005___hepT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03381___hepT-BPUM_2005___hepT.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03381___hepT
# 2: BPUM_2005___hepT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 980
# Identity:     735/980 (75.0%)
# Similarity:   735/980 (75.0%)
# Gaps:          34/980 ( 3.5%)
# Score: 2643.0
# 
#
#=======================================

BSNT_03381___      1 ATGAAATTTAA---AATGGCCTA-CTCTTTTTTAAATGACGATATTGATG     46
                     ||||||.|.||   ||||    | |||||||||||||.|.|||||.|||.
BPUM_2005___h      1 ATGAAACTAAAAGCAATG----ATCTCTTTTTTAAATCATGATATCGATA     46

BSNT_03381___     47 TAATCGAAAGAGAACTTGAACAAACCGTACGTTCCGATTACCCGCTTTTA     96
                     |.|||||||.|||.|||||||||||.||.||.||.|||||..|..|.|||
BPUM_2005___h     47 TTATCGAAAAAGAGCTTGAACAAACAGTTCGCTCTGATTATGCATTATTA     96

BSNT_03381___     97 AGCGAGGCAGGTCTTCACCTGCTGCAGGCCGGAGGGAAACGTATTCGTCC    146
                     ||.||.|||||||||||..|||||||.||.||.||.|||||.||.||.||
BPUM_2005___h     97 AGTGAAGCAGGTCTTCATTTGCTGCAAGCGGGCGGAAAACGAATCCGCCC    146

BSNT_03381___    147 TGTTTTCGTGCTGCTTTCTGGCATGTTTGGCGATTACGATATTAATAAGA    196
                     .|||||.||.||.|||||.||||||||||||||.|||||.||||||||.|
BPUM_2005___h    147 CGTTTTTGTTCTCCTTTCAGGCATGTTTGGCGACTACGACATTAATAAAA    196

BSNT_03381___    197 TTAAATATGTCGCCGTCACTCTGGAAATGATTCACATGGCATCTTTGGTT    246
                     ||||||||||.|||||..|.||.||..|.|||||.||||||||..|.|||
BPUM_2005___h    197 TTAAATATGTTGCCGTTGCGCTTGAGCTCATTCATATGGCATCGCTCGTT    246

BSNT_03381___    247 CATGATGATGTCATTGATGATGCAGAGCTTCGCCGAGGAAAACCGACAAT    296
                     ||.||||||||||||||||||||||||||..|..||||.||.||.||.||
BPUM_2005___h    247 CACGATGATGTCATTGATGATGCAGAGCTGAGAAGAGGCAAGCCAACGAT    296

BSNT_03381___    297 CAAAGCAAAGTGGGACAATCGTATTGCGATGTACACAGGCGATTATATGC    346
                     .||.|||||.|||||||||||.|||||.|||||||||||.|||||||||.
BPUM_2005___h    297 TAAGGCAAAATGGGACAATCGAATTGCCATGTACACAGGAGATTATATGT    346

BSNT_03381___    347 TTGCGGGATCTCTTGA-AATGATGACGAGAATTAACGAACCGAAAGCCCA    395
                     ||||..||||.||||| .|| |||||.|..||.||..|.||||..||.||
BPUM_2005___h    347 TTGCAAGATCGCTTGAGTAT-ATGACAAAGATCAATCATCCGATGGCACA    395

BSNT_03381___    396 TAGGATTTTGTCACAGACGATCGTTGAAGTTTGTCTAGGGGAAATTGAGC    445
                     |...|||||||||.|||.|.||||.||..|.|||||.||.|||||.||||
BPUM_2005___h    396 TGAAATTTTGTCAAAGATGGTCGTCGAGCTCTGTCTTGGTGAAATCGAGC    445

BSNT_03381___    446 AGATCAAAGACAAATATAACATGGAACAAAATCTCAGAACGTATCTCCGC    495
                     |..|.|||||||||||.||.|||||.|||||.||..|.||.|||.|..|.
BPUM_2005___h    446 AAGTGAAAGACAAATACAATATGGATCAAAACCTGCGTACATATTTAAGA    495

BSNT_03381___    496 CGTATCAAAAGAAAAACAGCTCTCTTGATCGC-GGTCAGCTGCCAGCTTG    544
                     .|.||||||.||||||||||..|..|.||.|| ||| |||||.|||.|.|
BPUM_2005___h    496 AGAATCAAACGAAAAACAGCCTTACTCATTGCAGGT-AGCTGTCAGTTAG    544

BSNT_03381___    545 GTGCCATTGCGTCTGGAGCTGATGAGAAGATTCATAAGGCATTGTACTGG    594
                     ||||.||.||..|.||..|.||||||||.|..|||||.||..|.||||||
BPUM_2005___h    545 GTGCAATAGCAGCAGGTACAGATGAGAAAACACATAAAGCCCTTTACTGG    594

BSNT_03381___    595 TTTGGGTATTACGTCGGCATGTCTTATCAGATTATTGATGATATTCTTGA    644
                     |||||.||.||.|||||.|||||.||||||||.|||||||||.|.|||||
BPUM_2005___h    595 TTTGGCTACTATGTCGGGATGTCCTATCAGATCATTGATGATGTGCTTGA    644

BSNT_03381___    645 TTTTACTTCAACTGAAGAAGAGCTGGGTAAACCCGTTGGAGGAGA--TTT    692
                     |||.||.|||||||||||||||||.|||||.||.||||||||.||  |||
BPUM_2005___h    645 TTTCACATCAACTGAAGAAGAGCTTGGTAAGCCTGTTGGAGGGGACCTTT    694

BSNT_03381___    693 GCTTCAAGGAAACGTCACATTGCCAGTGCTGTATGCCCTGAAAAATCCTG    742
                       |.||||||||.||||||.|.|||||..|.|||||.|||||.||||||.
BPUM_2005___h    695 --TACAAGGAAATGTCACACTCCCAGTCTTATATGCACTGAAGAATCCTA    742

BSNT_03381___    743 CATTAAAAAACCAGCTTAAA-TTGATTAACAGTGAGACAACGCAGGA--G    789
                     ||.|..||..||| .||||| .|||||||.|||||.||||  |||.|  |
BPUM_2005___h    743 CACTCGAAGGCCA-ATTAAAGCTGATTAATAGTGAAACAA--CAGAAATG    789

BSNT_03381___    790 CAGCTTGAACCAATCATTGAAGAAATCAAAAAAACAGATGCAATTGA-AG    838
                     |||||..|.||..|.||||||.|..|||||.||||||||||.||.|| .|
BPUM_2005___h    790 CAGCTAAAGCCTGTGATTGAACATCTCAAACAAACAGATGCGATCGATCG    839

BSNT_03381___    839 CATCTATGGCAGTAAGCGAAATGTATCTGCAGAAAGCTTT---TCAG--A    883
                     | ||.||...|||.||.|||||||||.||.|.||.||.||   .|||  |
BPUM_2005___h    840 C-TCGATTCGAGTGAGTGAAATGTATTTGAAAAAGGCATTCGAACAGCTA    888

BSNT_03381___    884 AATTAAACACGCTTCCACGAGGGCGCGCACGCTCGTCTCTTGCAGCCATC    933
                     .||.||     |||||.||||||||.|||.|..|.||.||.||..||||.
BPUM_2005___h    889 GATAAA-----CTTCCTCGAGGGCGAGCAAGAACATCACTCGCTTCCATT    933

BSNT_03381___    934 GCAAAATATATCGGTAAAAGAAAATTTTAA    963
                     ||.||||||||.||.|||.|||||||.|||
BPUM_2005___h    934 GCCAAATATATTGGAAAACGAAAATTCTAA    963


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03381 and BPUM_2005

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
