Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03364 and BPUM_1993
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:52
# Commandline: needle
# -asequence dna-align/BSNT_03364___hisC.1.24716.seq
# -bsequence dna-align/BPUM_1993___hisC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03364___hisC-BPUM_1993___hisC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03364___hisC-BPUM_1993___hisC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03364___hisC
# 2: BPUM_1993___hisC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1151
# Identity: 743/1151 (64.6%)
# Similarity: 743/1151 (64.6%)
# Gaps: 121/1151 (10.5%)
# Score: 2191.0
#
#
#=======================================
BSNT_03364___ 1 TTGCGTATCAAAGAACATTTAAAACAGCTGAAGCCTTATCAGCCTGGAAA 50
||||.|||||||||.||.||||||||.||.||.||.|||||.|||||.||
BPUM_1993___h 1 TTGCATATCAAAGATCAATTAAAACAACTAAAACCGTATCAACCTGGGAA 50
BSNT_03364___ 51 GCCGATTGAAGCAGTGAAATCAGAATATGGCTTGGATAAAGTTGTGAAGC 100
.||.|||||||..||.|||..|||||||...||.||.|||.|||||||..
BPUM_1993___h 51 ACCAATTGAAGAGGTCAAAAAAGAATATCAATTAGACAAAATTGTGAAAT 100
BSNT_03364___ 101 TTGCTTCAAACGAGAATCCTTACGGCTGTT---CAGAGGCTGCAAAAGAG 147
|.||||||||.||.||.||||..||.|||| ||.| |||||.||||
BPUM_1993___h 101 TGGCTTCAAATGAAAACCCTTTTGGATGTTCCACACA---TGCAAGAGAG 147
BSNT_03364___ 148 GCGCTTCATCATGAGATTCAACAGCTAGCCCTTTACCCGGACGGGTATAG 197
|||.|.||...||||.||.||||..||||..||||.||.||.||.||.||
BPUM_1993___h 148 GCGATACAAGCTGAGCTTGAACATTTAGCGATTTATCCAGATGGATACAG 197
BSNT_03364___ 198 CGCCGCTTTGCGGACA-AG---GCTCAGT------AAGCACCTCAATGTC 237
|||...|||..|.||| || |||.||| ||| |.||||
BPUM_1993___h 198 CGCAAGTTTAAGAACAGAGCTTGCTGAGTTTCTTCAAG----TAAATG-- 241
BSNT_03364___ 238 AGCGAAACATCACTT-ATTTTCGGCAACGGTTCTGATGAAATCATTCAGA 286
||.|.||.|| ||.|||||.||.||.||.||||||.|..|.||.|
BPUM_1993___h 242 -----AAAAACAATTAATATTCGGGAATGGCTCAGATGAACTTGTGCAAA 286
BSNT_03364___ 287 TCATCTGC-CGGGCATTTCTAAACAATAAAACCAATACGATCACTGCTGC 335
|.|| ||| .|||||||.||..||.|..|.||.|||||..||| |.|
BPUM_1993___h 287 TTAT-TGCTAGGGCATTCCTTGACCAACATACAAATACCGTCA----TCC 331
BSNT_03364___ 336 C----CCGACTTTTCCGCAATATAAACATAATGCGGTTATTGA--AGGTG 379
| |||.||||||||||||||...||.||||||.|.||||| || |
BPUM_1993___h 332 CATCTCCGTCTTTTCCGCAATATCGTCACAATGCGATCATTGAGCAG--G 379
BSNT_03364___ 380 CTGAAGTGCGTGAAATTGCACTTCGTCCC-----GACG-----GCTCACA 419
|.||..|.||.||..| |||.| |||| ||||||
BPUM_1993___h 380 CAGAGATTCGAGAGGT--------GTCGCTTTTAGACGGAGGAGCTCAC- 420
BSNT_03364___ 420 TGATTTAGACGCCATGTTAGAAGCCATCGACGAACAGACACAAGTCGTTT 469
|||.||.|.|.||||.|.||.|..||.||.||..|.||..|.|||||||
BPUM_1993___h 421 -GATCTAAAGGGCATGCTGGATGAGATTGATGAGAACACGAAGGTCGTTT 469
BSNT_03364___ 470 GGATATGCAGCCCGAATAATCCGACTGGCACTTATACATCTGAAGGAGAA 519
||.||||||.|||||||||.|||||.||.|.|.||...||.|||...||.
BPUM_1993___h 470 GGGTATGCAACCCGAATAACCCGACAGGAAATCATTTGTCAGAATCTGAG 519
BSNT_03364___ 520 TTACTCGCATTTCTGGAGCGCGTTCCTTCACGTGTCCTTGTTGTTCTTGA 569
.|..|.||.|||.|.||.|..||.||..|.|.|||.|||||.||.||.||
BPUM_1993___h 520 CTTGTGGCGTTTTTAGATCAAGTACCCGCTCATGTACTTGTGGTACTAGA 569
BSNT_03364___ 570 CGAAGCATATTATGAATATGTAACAGCAGAGGATTACCCGGAAACCGTGC 619
.||.||||||...||||||||....||.||.||.||.|||.|.|.|.|..
BPUM_1993___h 570 TGAGGCATATGTCGAATATGTTCGTGCGGAAGACTATCCGAACAGCTTAT 619
BSNT_03364___ 620 CGCTCTTAAGCAAGTATTCCAATTTGATGATTTTGCGCACATTTTCAAAG 669
|..|.|||..||..|||...|||.|.||..|..|.||.||.||||||||.
BPUM_1993___h 620 CTTTATTACACAGTTATCAAAATGTTATCGTACTCCGAACGTTTTCAAAA 669
BSNT_03364___ 670 GCATACGGTCTGGCAGCGCTCAGAGTCGGATACGGAATTG---CTGACGA 716
||.||.||.|||||.|||||..||||.||.||.||.|||| |.||.||
BPUM_1993___h 670 GCGTATGGGCTGGCGGCGCTTCGAGTAGGCTATGGCATTGCATCAGAAGA 719
BSNT_03364___ 717 GAACCTGATT--CGCCAGATTGAGCCGGCGAGAGAGCCGTTTAATACGAG 764
| .||||| .|| |||||||||.|||||||||||||||||||||||
BPUM_1993___h 720 G---TTGATTACTGC--GATTGAGCCAGCGAGAGAGCCGTTTAATACGAG 764
BSNT_03364___ 765 CCGTCTGGGCCAGGCTGCGG--CGATTGCCGCACTTGAT----GATCAAG 808
.|||.|.|.||||||.||.| ||| ||.|| ||| |||||.|
BPUM_1993___h 765 TCGTATCGCCCAGGCAGCTGCTCGA--GCGGC----GATAAAAGATCAGG 808
BSNT_03364___ 809 CGTTTATTGCTTCCTG-TGTCGAGCAAAATAATGCAGGCCTTCAGCAGTA 857
..||.|||...||.|| .|.| ||.|||||.|.|||||.||..|.||.||
BPUM_1993___h 809 ATTTCATTCAATCATGCAGAC-AGAAAAATGAGGCAGGTCTCAAACAATA 857
BSNT_03364___ 858 TTATGATTTTGCGAAAACTCATGG----TTTAAAGTGCTACCCTTCACAG 903
|.|.||.|||||..|...|..||| |||| ..||.||.||.||.
BPUM_1993___h 858 TCAAGAATTTGCTGACCGTTTTGGACTATTTA----TTTATCCGTCTCAA 903
BSNT_03364___ 904 ACAAATTTTGTGTTAATTGACTTTAAACGTCCTGCTGATGAACTGTTTCA 953
|||||.||.|||.|.|||||.||||||.|...|||.||||||||.|||||
BPUM_1993___h 904 ACAAACTTCGTGCTGATTGATTTTAAAAGAGATGCAGATGAACTATTTCA 953
BSNT_03364___ 954 GGCTCTGCTGGAAAAAGGCTATATCGTCCGGTCAGGAAATGCATTAGGTT 1003
.||..|..|..|||||||||||||.||.||.||.||.||.|.|.|.||||
BPUM_1993___h 954 TGCATTATTAAAAAAAGGCTATATTGTTCGATCTGGTAAAGTACTTGGTT 1003
BSNT_03364___ 1004 TCCCGACATCACTCCGGATTACGATCGGAACAAAAGAGCAAAATGAAGAA 1053
|.||.||.||..|.||.||||||.|.|||||||..||||||||||.||||
BPUM_1993___h 1004 TTCCAACGTCTTTACGTATTACGGTAGGAACAATGGAGCAAAATGCAGAA 1053
BSNT_03364___ 1054 ATACT---TGCCATTTTAGCTGAAATTTTAT---AA-------------- 1083
||.|| |.|..|| ||||| ||||| ||
BPUM_1993___h 1054 ATTCTAAGTACACTT---GCTGA---TTTATTGCAAGGCATTCGTGCGTA 1097
BSNT_03364___ 1083 - 1083
BPUM_1993___h 1098 G 1098
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