Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03364 and BPUM_1993

See Amino acid alignment / Visit BSNT_03364 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:52
# Commandline: needle
#    -asequence dna-align/BSNT_03364___hisC.1.24716.seq
#    -bsequence dna-align/BPUM_1993___hisC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03364___hisC-BPUM_1993___hisC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03364___hisC-BPUM_1993___hisC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03364___hisC
# 2: BPUM_1993___hisC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1151
# Identity:     743/1151 (64.6%)
# Similarity:   743/1151 (64.6%)
# Gaps:         121/1151 (10.5%)
# Score: 2191.0
# 
#
#=======================================

BSNT_03364___      1 TTGCGTATCAAAGAACATTTAAAACAGCTGAAGCCTTATCAGCCTGGAAA     50
                     ||||.|||||||||.||.||||||||.||.||.||.|||||.|||||.||
BPUM_1993___h      1 TTGCATATCAAAGATCAATTAAAACAACTAAAACCGTATCAACCTGGGAA     50

BSNT_03364___     51 GCCGATTGAAGCAGTGAAATCAGAATATGGCTTGGATAAAGTTGTGAAGC    100
                     .||.|||||||..||.|||..|||||||...||.||.|||.|||||||..
BPUM_1993___h     51 ACCAATTGAAGAGGTCAAAAAAGAATATCAATTAGACAAAATTGTGAAAT    100

BSNT_03364___    101 TTGCTTCAAACGAGAATCCTTACGGCTGTT---CAGAGGCTGCAAAAGAG    147
                     |.||||||||.||.||.||||..||.||||   ||.|   |||||.||||
BPUM_1993___h    101 TGGCTTCAAATGAAAACCCTTTTGGATGTTCCACACA---TGCAAGAGAG    147

BSNT_03364___    148 GCGCTTCATCATGAGATTCAACAGCTAGCCCTTTACCCGGACGGGTATAG    197
                     |||.|.||...||||.||.||||..||||..||||.||.||.||.||.||
BPUM_1993___h    148 GCGATACAAGCTGAGCTTGAACATTTAGCGATTTATCCAGATGGATACAG    197

BSNT_03364___    198 CGCCGCTTTGCGGACA-AG---GCTCAGT------AAGCACCTCAATGTC    237
                     |||...|||..|.||| ||   |||.|||      |||    |.||||  
BPUM_1993___h    198 CGCAAGTTTAAGAACAGAGCTTGCTGAGTTTCTTCAAG----TAAATG--    241

BSNT_03364___    238 AGCGAAACATCACTT-ATTTTCGGCAACGGTTCTGATGAAATCATTCAGA    286
                          ||.|.||.|| ||.|||||.||.||.||.||||||.|..|.||.|
BPUM_1993___h    242 -----AAAAACAATTAATATTCGGGAATGGCTCAGATGAACTTGTGCAAA    286

BSNT_03364___    287 TCATCTGC-CGGGCATTTCTAAACAATAAAACCAATACGATCACTGCTGC    335
                     |.|| ||| .|||||||.||..||.|..|.||.|||||..|||    |.|
BPUM_1993___h    287 TTAT-TGCTAGGGCATTCCTTGACCAACATACAAATACCGTCA----TCC    331

BSNT_03364___    336 C----CCGACTTTTCCGCAATATAAACATAATGCGGTTATTGA--AGGTG    379
                     |    |||.||||||||||||||...||.||||||.|.|||||  ||  |
BPUM_1993___h    332 CATCTCCGTCTTTTCCGCAATATCGTCACAATGCGATCATTGAGCAG--G    379

BSNT_03364___    380 CTGAAGTGCGTGAAATTGCACTTCGTCCC-----GACG-----GCTCACA    419
                     |.||..|.||.||..|        |||.|     ||||     |||||| 
BPUM_1993___h    380 CAGAGATTCGAGAGGT--------GTCGCTTTTAGACGGAGGAGCTCAC-    420

BSNT_03364___    420 TGATTTAGACGCCATGTTAGAAGCCATCGACGAACAGACACAAGTCGTTT    469
                      |||.||.|.|.||||.|.||.|..||.||.||..|.||..|.|||||||
BPUM_1993___h    421 -GATCTAAAGGGCATGCTGGATGAGATTGATGAGAACACGAAGGTCGTTT    469

BSNT_03364___    470 GGATATGCAGCCCGAATAATCCGACTGGCACTTATACATCTGAAGGAGAA    519
                     ||.||||||.|||||||||.|||||.||.|.|.||...||.|||...||.
BPUM_1993___h    470 GGGTATGCAACCCGAATAACCCGACAGGAAATCATTTGTCAGAATCTGAG    519

BSNT_03364___    520 TTACTCGCATTTCTGGAGCGCGTTCCTTCACGTGTCCTTGTTGTTCTTGA    569
                     .|..|.||.|||.|.||.|..||.||..|.|.|||.|||||.||.||.||
BPUM_1993___h    520 CTTGTGGCGTTTTTAGATCAAGTACCCGCTCATGTACTTGTGGTACTAGA    569

BSNT_03364___    570 CGAAGCATATTATGAATATGTAACAGCAGAGGATTACCCGGAAACCGTGC    619
                     .||.||||||...||||||||....||.||.||.||.|||.|.|.|.|..
BPUM_1993___h    570 TGAGGCATATGTCGAATATGTTCGTGCGGAAGACTATCCGAACAGCTTAT    619

BSNT_03364___    620 CGCTCTTAAGCAAGTATTCCAATTTGATGATTTTGCGCACATTTTCAAAG    669
                     |..|.|||..||..|||...|||.|.||..|..|.||.||.||||||||.
BPUM_1993___h    620 CTTTATTACACAGTTATCAAAATGTTATCGTACTCCGAACGTTTTCAAAA    669

BSNT_03364___    670 GCATACGGTCTGGCAGCGCTCAGAGTCGGATACGGAATTG---CTGACGA    716
                     ||.||.||.|||||.|||||..||||.||.||.||.||||   |.||.||
BPUM_1993___h    670 GCGTATGGGCTGGCGGCGCTTCGAGTAGGCTATGGCATTGCATCAGAAGA    719

BSNT_03364___    717 GAACCTGATT--CGCCAGATTGAGCCGGCGAGAGAGCCGTTTAATACGAG    764
                     |   .|||||  .||  |||||||||.|||||||||||||||||||||||
BPUM_1993___h    720 G---TTGATTACTGC--GATTGAGCCAGCGAGAGAGCCGTTTAATACGAG    764

BSNT_03364___    765 CCGTCTGGGCCAGGCTGCGG--CGATTGCCGCACTTGAT----GATCAAG    808
                     .|||.|.|.||||||.||.|  |||  ||.||    |||    |||||.|
BPUM_1993___h    765 TCGTATCGCCCAGGCAGCTGCTCGA--GCGGC----GATAAAAGATCAGG    808

BSNT_03364___    809 CGTTTATTGCTTCCTG-TGTCGAGCAAAATAATGCAGGCCTTCAGCAGTA    857
                     ..||.|||...||.|| .|.| ||.|||||.|.|||||.||..|.||.||
BPUM_1993___h    809 ATTTCATTCAATCATGCAGAC-AGAAAAATGAGGCAGGTCTCAAACAATA    857

BSNT_03364___    858 TTATGATTTTGCGAAAACTCATGG----TTTAAAGTGCTACCCTTCACAG    903
                     |.|.||.|||||..|...|..|||    ||||    ..||.||.||.||.
BPUM_1993___h    858 TCAAGAATTTGCTGACCGTTTTGGACTATTTA----TTTATCCGTCTCAA    903

BSNT_03364___    904 ACAAATTTTGTGTTAATTGACTTTAAACGTCCTGCTGATGAACTGTTTCA    953
                     |||||.||.|||.|.|||||.||||||.|...|||.||||||||.|||||
BPUM_1993___h    904 ACAAACTTCGTGCTGATTGATTTTAAAAGAGATGCAGATGAACTATTTCA    953

BSNT_03364___    954 GGCTCTGCTGGAAAAAGGCTATATCGTCCGGTCAGGAAATGCATTAGGTT   1003
                     .||..|..|..|||||||||||||.||.||.||.||.||.|.|.|.||||
BPUM_1993___h    954 TGCATTATTAAAAAAAGGCTATATTGTTCGATCTGGTAAAGTACTTGGTT   1003

BSNT_03364___   1004 TCCCGACATCACTCCGGATTACGATCGGAACAAAAGAGCAAAATGAAGAA   1053
                     |.||.||.||..|.||.||||||.|.|||||||..||||||||||.||||
BPUM_1993___h   1004 TTCCAACGTCTTTACGTATTACGGTAGGAACAATGGAGCAAAATGCAGAA   1053

BSNT_03364___   1054 ATACT---TGCCATTTTAGCTGAAATTTTAT---AA--------------   1083
                     ||.||   |.|..||   |||||   |||||   ||              
BPUM_1993___h   1054 ATTCTAAGTACACTT---GCTGA---TTTATTGCAAGGCATTCGTGCGTA   1097

BSNT_03364___   1083 -   1083
                      
BPUM_1993___h   1098 G   1098


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