Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03363 and BPUM_1992
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:52
# Commandline: needle
# -asequence dna-align/BSNT_03363___tyrA.1.24716.seq
# -bsequence dna-align/BPUM_1992___tyrA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03363___tyrA-BPUM_1992___tyrA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03363___tyrA-BPUM_1992___tyrA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03363___tyrA
# 2: BPUM_1992___tyrA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1203
# Identity: 795/1203 (66.1%)
# Similarity: 795/1203 (66.1%)
# Gaps: 135/1203 (11.2%)
# Score: 2616.5
#
#
#=======================================
BSNT_03363___ 1 ---------------------------------------ATGAAT----C 7
|||||| |
BPUM_1992___t 1 ATGGCTTTTTTAATTTTCGCGAAAAAACAGGTGATGAACATGAATGATGC 50
BSNT_03363___ 8 AAATGAAAGATACAATATTGCTCGCCGGTCTCGGATTGATAGGCGGTTCG 57
||||||| ||||||||..||||.||.||.||.||.||.||.|||||.
BPUM_1992___t 51 AAATGAA----ACAATATTAATCGCTGGACTTGGTTTAATTGGAGGTTCC 96
BSNT_03363___ 58 ATTGCCCTAGCCATCAAAAAAAATCATCCCGGCAAACGGATTATCGGAAT 107
||.||.||..|.||.||||||.|..|||||...|||...|||.|.|||..
BPUM_1992___t 97 ATCGCACTGTCGATTAAAAAAGAGTATCCCTATAAAAAAATTGTTGGATA 146
BSNT_03363___ 108 CGATATCTCTGATGAACAGGCGGTAGCGGCATTAAAATTAGGCGTGATAG 157
||||.|.||..|.|||||...|||.||.|||..|||..||||..|.||.|
BPUM_1992___t 147 CGATGTGTCCAAAGAACAAATGGTTGCAGCAACAAAGCTAGGTATCATTG 196
BSNT_03363___ 158 ACGATCGT------GCTGATTCGTTT--------ATTAGCGG----TGCG 189
| | ||||||||.||| .||.||.| ||||
BPUM_1992___t 197 A------TTTAGCAGCTGATTCTTTTGCAGCAGGTTTGGCTGAATCTGCG 240
BSNT_03363___ 190 AAAGAGGCAGCTACAGTAATCATT---GCGACACCTGTTGAACAAACACT 236
| || |||||| ||.|||||.|||.|.||||||.|
BPUM_1992___t 241 A---------CT------ATCATTTTGGCAACACCAGTTCAGCAAACAGT 275
BSNT_03363___ 237 GGTTATGCTTGAAGAGCTGGCTCATTCAGGAATTGA-ACATGAGCTTTTG 285
....||||||...||..|.||..|.||.|||||||| |.| ||||||...
BPUM_1992___t 276 AAAGATGCTTCGTGATATTGCAAACTCTGGAATTGAGAGA-GAGCTTACA 324
BSNT_03363___ 286 ATTACGGATGTAGGAAGCACAAAGCAAAAAGTGGTTGATTACGCTGATCA 335
|||||.|||||.||.||||||||||||||.||.||..|||..||.||..|
BPUM_1992___t 325 ATTACCGATGTCGGCAGCACAAAGCAAAAGGTCGTCCATTTTGCAGAAAA 374
BSNT_03363___ 336 AGTGCTGCCTAGCCGCTATCAATTTGTCGGAGGGCATCCGATGGCGGGTT 385
|..|||.||||..|.||||||||||.|.||.||.|||||.|||||.||.|
BPUM_1992___t 375 AACGCTTCCTAATCACTATCAATTTATTGGTGGACATCCAATGGCAGGCT 424
BSNT_03363___ 386 CACATAAATCAGGAGTGGCCGCTGCGAAGGAGTTCCTGTTTGAAAATGCA 435
|.||.||.|||||.||....||.|||||.||.||..|.|||||||||||.
BPUM_1992___t 425 CTCACAAGTCAGGTGTCATTGCAGCGAAAGACTTTTTATTTGAAAATGCG 474
BSNT_03363___ 436 TTTTATATTTTAACGCCAGGCCAGAAAACGGACAAAC----AAGCTGTGG 481
||.||.|||||||||||||...||.|| |||||| |.|||||.|
BPUM_1992___t 475 TTCTACATTTTAACGCCAGCAAAGGAA----ACAAACCGCGATGCTGTTG 520
BSNT_03363___ 482 AACAGTTAAAAAACCTGCTGAAGGGGACGAATGCCCATTTTGTGGAAATG 531
|.|..||.||..||.||.|.|||||.||.|||||.||||||.|.||||||
BPUM_1992___t 521 ATCGTTTGAAGGACTTGTTAAAGGGAACAAATGCTCATTTTATTGAAATG 570
BSNT_03363___ 532 TCGCCAGAGGAGCATGATGGTGTTACAAGTGTAATCAGTCATTTTCCGCA 581
.|.|||||.||.|||||||||||.||||||||.||.||||||||.|||||
BPUM_1992___t 571 ACCCCAGAAGAACATGATGGTGTAACAAGTGTGATTAGTCATTTCCCGCA 620
BSNT_03363___ 582 TATTGTAGCAGCCAGTCTTGTTCACCAAACCCATCATTCGGAAAACCTGT 631
||||||.||.|||||.|||||.||.|||.|.|||||||..|||.|.|..|
BPUM_1992___t 621 TATTGTTGCTGCCAGCCTTGTGCATCAAGCGCATCATTTTGAAGAACACT 670
BSNT_03363___ 632 ATCCGCTTGTTAAGCGTTTTGCTGCCGGCGGATTCAGAGATATTACAAGG 681
..||.||||||||.||.||||||||.||.||.||..|.|||||||||.|.
BPUM_1992___t 671 TCCCACTTGTTAAACGGTTTGCTGCTGGAGGCTTTCGTGATATTACACGT 720
BSNT_03363___ 682 ATTGCATCAAGCAGCCCGGCAATGTGGCGGGATATTTTATTACATAATAA 731
|||||||||||||..||.|||||||||||.|||||..|..|.||.||.||
BPUM_1992___t 721 ATTGCATCAAGCAATCCTGCAATGTGGCGAGATATCCTTCTGCACAACAA 770
BSNT_03363___ 732 AGATAAAATCTTAGACCGTTTTGATGAGTGGATTCGTGAAATTGACAAGA 781
|.||||.||.||||||||.||..||||.|||| ||| |..|||
BPUM_1992___t 771 AAATAAGATTTTAGACCGGTTCCATGAATGGA------AAA---AAGAGA 811
BSNT_03363___ 782 T---CCG------TACATATGTAGAACAAGAAGATGCGGAAAATCTATTT 822
| ||| .||.|.|||..|.||||||||.||.| ||..||..||
BPUM_1992___t 812 TCGACCGCATTGAGACCTTTGTGCAGCAAGAAGACGCTG-AAGGCTTGTT 860
BSNT_03363___ 823 C-GTTATTTTAAAACCGCCAAGGATTATCGCGACGGGCTGCCGCTTCGGC 871
| .|||||||.||...||.|||||.|||||.||.||.||.||..|..||.
BPUM_1992___t 861 CTCTTATTTTCAAGAGGCAAAGGAATATCGTGATGGACTTCCTTTGAGGA 910
BSNT_03363___ 872 AGAAGGGAGCGATACCTGCATTTTATGATTTATATGTGGATGTACCCGAT 921
|.||.||.||.||||||||.||||||||..|.|||||||||||.||.|||
BPUM_1992___t 911 AAAAAGGTGCTATACCTGCTTTTTATGACCTTTATGTGGATGTTCCAGAT 960
BSNT_03363___ 922 CATCCGGGTGTAATATCCGAGATAACAGCG-ATCTTAGCTGCGGAGCGCA 970
||.||.||.||.||.||.||.||.||||.| || |||||....|||..||
BPUM_1992___t 961 CACCCTGGGGTCATTTCGGAAATTACAGGGCAT-TTAGCAAATGAGAACA 1009
BSNT_03363___ 971 TCAGTATCACGAATATCCGCATTATCGAAACACGAGAGGATATTAACGGG 1020
|||||||.|||||||||||.|||||.|||||.||.||.|||||.||.|||
BPUM_1992___t 1010 TCAGTATTACGAATATCCGTATTATTGAAACGCGGGAAGATATAAATGGG 1059
BSNT_03363___ 1021 ATTTTAAGGATCAGTTTTCAGTCTGATGACGACCGCAAAAGGGCAGA--- 1067
||||||.|.||.||.|||||..|.||.||||||||.|||.|.|||||
BPUM_1992___t 1060 ATTTTACGCATTAGCTTTCAAACAGAAGACGACCGTAAACGTGCAGAGAT 1109
BSNT_03363___ 1068 ----ACAATGCATTGAAGCCCGGGCGGAATATGAAACTTTTTATGCTGAT 1113
|.||...||.|| |||.|.||.||.||.|||||||||||.
BPUM_1992___t 1110 CTGTATAAAAAATAGA-------GCGAATTACGATACATTTTATGCTGAC 1152
BSNT_03363___ 1114 TGA 1116
|||
BPUM_1992___t 1153 TGA 1155
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