Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03362 and BPUM_1991
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:52
# Commandline: needle
# -asequence dna-align/BSNT_03362___aroE.1.24716.seq
# -bsequence dna-align/BPUM_1991___aroE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03362___aroE-BPUM_1991___aroE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03362___aroE-BPUM_1991___aroE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03362___aroE
# 2: BPUM_1991___aroE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1354
# Identity: 935/1354 (69.1%)
# Similarity: 935/1354 (69.1%)
# Gaps: 101/1354 ( 7.5%)
# Score: 3115.0
#
#
#=======================================
BSNT_03362___ 1 ATGAAACTTTTT----ATGCTGATTGAGGTGGAAAAAATGAAACGAGAAA 46
||||||.||..| |||||..| ||||
BPUM_1991___a 1 ATGAAAATTCATAAACATGCTCCT-------------ATGA--------- 28
BSNT_03362___ 47 AGGTGCAGGCCTTACATGGAGAAATACATATTCCCGGTGATAAATCCATT 96
||||||..||.||||||||.|||||||||||||||
BPUM_1991___a 29 ---------------ATGGAGTCATTCATATTCCAGGTGATAAATCCATT 63
BSNT_03362___ 97 TCTCACCGCTCTGTTATGTTTGGCGC----GCTAGCGGCA-GGCACAACA 141
|||||.||.||.||.||||||||.|| |||| | ||.||.|||
BPUM_1991___a 64 TCTCATCGATCAGTGATGTTTGGAGCAATTGCTA-----ATGGGACGACA 108
BSNT_03362___ 142 ACTGTTAAAAACTTTCTGCCGGGAGCAGATTGTCTGAGCACGATCGATTG 191
...||.|||||||||||.||.|||||.||||||.|.|||||.||.|||||
BPUM_1991___a 109 GTGGTGAAAAACTTTCTCCCAGGAGCTGATTGTTTAAGCACAATTGATTG 158
BSNT_03362___ 192 CTTTAGAAAAATGGGTGTTCACATTGAGCAAAGCGGCAGCGATGTCGTGA 241
.||||||||.|||||.|||.|||||||.||||..||.|..|||||.||||
BPUM_1991___a 159 TTTTAGAAAGATGGGCGTTGACATTGAACAAAAAGGGACAGATGTTGTGA 208
BSNT_03362___ 242 TTCATGGAAAAGGAATCGATGCCCTGAAAGAGCCAGAA--AGCC------ 283
|||||||.||.||| ||||||||| |.||| ||||
BPUM_1991___a 209 TTCATGGGAAGGGA---------CTGAAAGAG-CTGAAGGAGCCGTCTGA 248
BSNT_03362___ 284 --TTTTAGATGTCGGAAATTCAGGTACAACGATTCGCCTGATGCTCGGAA 331
|..|.|||||.||||||||.||||||||.|||||..|.|||.|.||||
BPUM_1991___a 249 CGTCCTCGATGTTGGAAATTCTGGTACAACCATTCGATTAATGATGGGAA 298
BSNT_03362___ 332 TATTGGCGGGCCGTCCTTTTTACAGCGCGGTAGCCGGAGATGAGAGCATT 381
||||.||.||..||...|||.||||..|..|...|||.||||||||.|||
BPUM_1991___a 299 TATTAGCTGGTTGTGAGTTTCACAGTACACTGATCGGTGATGAGAGTATT 348
BSNT_03362___ 382 GCGAAGCGCCCAATGAAGCGTGTGACTGAGCCTTTGAAAAAAATGGGGGC 431
||.||..|.||.|||.|.||.||.||.|..||..|.|||.||.|.||.||
BPUM_1991___a 349 GCTAAAAGACCCATGCAACGAGTAACAGGTCCACTTAAACAACTAGGAGC 398
BSNT_03362___ 432 TAAAATCGACGGCAGAGCCGGCGGAGAGTTTACACCGCTGTC----AGTG 477
.||.||.||.||.|||||...|||.||||.|||.|||||||| .|||
BPUM_1991___a 399 GAAGATAGATGGTAGAGCAAACGGCGAGTATACGCCGCTGTCTATTCGTG 448
BSNT_03362___ 478 AGCGGCGCTTCA-TTAAAAGGAAT-TGATTATGTATCACCTGTTGCAAGC 525
|.|| ||| ||||||||||| |.| ||||..||.||.||.|||||.
BPUM_1991___a 449 -GTGG----TCATTTAAAAGGAATCTCA-TATGAGTCTCCAGTCGCAAGT 492
BSNT_03362___ 526 GCGCAAATTAAATCTGCTGTTTTGTTGGCCGGATTACAGGCTGAGGGCAC 575
|||||||||||.||.|||||..|.||.||.||..|.||.||.|||||.||
BPUM_1991___a 493 GCGCAAATTAAGTCCGCTGTCCTTTTAGCAGGGCTTCAAGCAGAGGGAAC 542
BSNT_03362___ 576 AACAACTGTCACAGAGCCCCATAAATCTCGGGACCACACTGAGCGGATGC 625
|||.||..|.||.||.||.||||||||..|.||.||.||.||..|.||||
BPUM_1991___a 543 AACGACATTAACTGAACCACATAAATCAAGAGATCATACAGAAAGAATGC 592
BSNT_03362___ 626 TTTC--TGCTTTTGGCGTTAAGCTTTCTGAAGATCAAACGAGTGTTTCCA 673
|.|| || |||||.||.||.||....||||||.||...||||||||||
BPUM_1991___a 593 TCTCCATG--TTTGGTGTGAAACTAGACGAAGATGAACAAAGTGTTTCCA 640
BSNT_03362___ 674 TTGCTGGTGGCCAGAAACTGACAGCTGCTGATATTTTTGTTCCTGGAGAC 723
|||..||.||.||.|.|.|.|.|||..|.|||||.|||||||||||||||
BPUM_1991___a 641 TTGAAGGCGGTCAAACATTAAAAGCAACAGATATATTTGTTCCTGGAGAC 690
BSNT_03362___ 724 ATTTCTTCAGCCGCGTTTTTCCTTGCTGCTGGCGCGATGGTTCCAAACAG 773
|||||||||||.||.||||||||||.||||||..||||.|||||.|||||
BPUM_1991___a 691 ATTTCTTCAGCTGCATTTTTCCTTGTTGCTGGATCGATTGTTCCTAACAG 740
BSNT_03362___ 774 CAGAATTGTATTGAAAAACGTAGGTTTAAATCCGACTCGGACAGGTATTA 823
|.|||||||.||.|||||.||.||..||||....||..|.||.|||||||
BPUM_1991___a 741 CCGAATTGTGTTAAAAAATGTTGGGCTAAACAAAACAAGAACGGGTATTA 790
BSNT_03362___ 824 TTGACGTCCTTCAAAAC--ATGGGGGCAAAACTTGAAATCA---AACCAT 868
||||.|| ||.||||| |||||.||.||.|||||.|||| ||..|.
BPUM_1991___a 791 TTGATGT--TTTAAAACAAATGGGTGCGAATCTTGAGATCAATGAAGTAG 838
BSNT_03362___ 869 CTGCTGATAGCGGTGCAGAGCCTTATGGAGATTTGATTATAGAAACGTCA 918
.|||..|..|||| ||||||.|||||.|||||.|..||....||.||.
BPUM_1991___a 839 ATGCAAAAGGCGG---AGAGCCATATGGCGATTTAACAATCTCGACCTCT 885
BSNT_03362___ 919 TCTCTAAAAGCAGTTGAAATCGGAGGAGATATCATTCCGCGTTTAATTGA 968
||..||||||...|.|||||....||.|||.|.|||.|..|..|.||.||
BPUM_1991___a 886 TCATTAAAAGGGATCGAAATTTCTGGTGATGTGATTTCAAGACTCATCGA 935
BSNT_03362___ 969 TGAGATCCCTATCATCGCGCTTCTTGCGACTCAGGCGGAAGGAACTACCG 1018
||||||.||.||.||.||||||||.||.||.||.||.||||||||.||..
BPUM_1991___a 936 TGAGATTCCGATTATAGCGCTTCTAGCAACACAAGCAGAAGGAACAACGA 985
BSNT_03362___ 1019 TTATTAAGGACGCGGCAGAGCTAAAAGTGAAAGAAACAAACCGTATTGAT 1068
|||||||.||.||.||.|||.|||||||.|||||.||.||.||.||.|||
BPUM_1991___a 986 TTATTAAAGATGCTGCTGAGTTAAAAGTAAAAGAGACCAATCGAATCGAT 1035
BSNT_03362___ 1069 ACTGTTGTTTCTGAGCTTCGCAAGCTGGGTGCTGAAATTGAACCGACAGC 1118
||.||.||.||.||.|||...||.||.||||||||.||||||.|.||||.
BPUM_1991___a 1036 ACAGTCGTGTCAGAACTTAAAAAACTCGGTGCTGATATTGAAGCAACAGA 1085
BSNT_03362___ 1119 AGATGGAATGAAGGTTTATGGTAAACAAACGTTGAAAGGCGGCGCGGCAG 1168
||||||.||||||.||.||||||||....||.|..||||||||||.|..|
BPUM_1991___a 1086 AGATGGTATGAAGATTCATGGTAAAACCCCGCTTCAAGGCGGCGCTGTTG 1135
BSNT_03362___ 1169 TGTCCAGCCACGGAGATCATCGAATCGGAATGATGCTTGGTATTGCTTCC 1218
|.||.|||.||||||||||.||||||||.|||||||||||.||||||.|.
BPUM_1991___a 1136 TATCAAGCTACGGAGATCACCGAATCGGTATGATGCTTGGGATTGCTGCA 1185
BSNT_03362___ 1219 TGTATAACGGAGGAGCCGATTGAAATCGAGCACACGGATGCCATTCACGT 1268
|||||.||..||.|..||.||||.||.||..|.||.|||||..|.|.|||
BPUM_1991___a 1186 TGTATCACAAAGCAAGCGGTTGAGATTGAAGATACAGATGCTGTACGCGT 1235
BSNT_03362___ 1269 TTCTTATCCAACCTTCTTCGAGCAT-TTAAATAAGCTT-TCGAAAAAATC 1316
.||.||.||.|..|||||.||.||| ||.|||| ||| .|.||||.|..
BPUM_1991___a 1236 CTCATACCCGAATTTCTTTGAACATATTGAATA--CTTAACCAAAACAGT 1283
BSNT_03362___ 1317 CTGA 1320
||||
BPUM_1991___a 1284 CTGA 1287
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