Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03358 and BPUM_1989
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:52
# Commandline: needle
# -asequence dna-align/BSNT_03358___ypiB.1.24716.seq
# -bsequence dna-align/BPUM_1989___ypiB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03358___ypiB-BPUM_1989___ypiB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03358___ypiB-BPUM_1989___ypiB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03358___ypiB
# 2: BPUM_1989___ypiB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 549
# Identity: 423/549 (77.0%)
# Similarity: 423/549 (77.0%)
# Gaps: 18/549 ( 3.3%)
# Score: 1569.5
#
#
#=======================================
BSNT_03358___ 1 ATGCAGACCCCTGTTTCTGTCAATGAGAAAAAAGATTTTATCCGTTGGTT 50
||||||||||||||||||||||||||.||.||.||.||.|||||.|||||
BPUM_1989___y 1 ATGCAGACCCCTGTTTCTGTCAATGAAAAGAAGGAATTCATCCGGTGGTT 50
BSNT_03358___ 51 TTTAAACCATTATCAGTTAAAGCGCCGAGAGTGCGTTTGGATCTTGAACT 100
||||||||||||||||||||||||..|||||||.||||||||.||.||.|
BPUM_1989___y 51 TTTAAACCATTATCAGTTAAAGCGAAGAGAGTGTGTTTGGATATTAAATT 100
BSNT_03358___ 101 ACTTAATGAGCCATGATTCTCTCATGGAGAAGGTTCATTTTGTGGAGCAG 150
|.||||||||.||.||.|||.|.|||||.||||||||||||||.|||||.
BPUM_1989___y 101 ATTTAATGAGTCACGACTCTTTGATGGAAAAGGTTCATTTTGTAGAGCAA 150
BSNT_03358___ 151 GCTGAATTTTGCCCGAGAGGCATTATAATGTCAACACATTGTGTTGAAGA 200
||.|||||||||||.||.||.||.||.|||||||||||.|||||.||.||
BPUM_1989___y 151 GCAGAATTTTGCCCAAGGGGAATCATTATGTCAACACACTGTGTGGATGA 200
BSNT_03358___ 201 AGTTCCGTTCCGGTTCTATAAAGAGAATGTCATGACTACCGACGCGGAAA 250
||||||.||..|.||.||||||||.||..|||||||.||.||.||.||||
BPUM_1989___y 201 AGTTCCCTTTAGATTTTATAAAGAAAACATCATGACGACAGATGCTGAAA 250
BSNT_03358___ 251 AATCTTTTCATGATATTAGATTAAATAAACAGCAGGATTTGTTTATCCAG 300
|.||.||||||||||||.|.||.|||||||||||.|||||||||||.||.
BPUM_1989___y 251 AGTCATTTCATGATATTCGCTTGAATAAACAGCAAGATTTGTTTATTCAA 300
BSNT_03358___ 301 CTTAATTTCCGTTCGGCTTACAGCTCACCTGAATATGCGGCGGTGCTGGA 350
.|.|||||||||||.|||||..|.||.||.||||||||.||.|||||.||
BPUM_1989___y 301 TTGAATTTCCGTTCTGCTTATCGTTCGCCGGAATATGCAGCTGTGCTTGA 350
BSNT_03358___ 351 GTCCAACCCGCATATTCCGAAAAACCTTTTTGAGAATAAAAAAGATCAGG 400
..|.||.||.||||||||.||..|.||||.||||||..|||||||| |.|
BPUM_1989___y 351 AACAAATCCTCATATTCCAAAGGATCTTTATGAGAACGAAAAAGAT-AAG 399
BSNT_03358___ 401 GAT-TGGCGGA-ACAG-ATTTTAGAGCACGCTATTTCCACATTCCAAAGA 447
||| |.||.|| |.|| |.|| ||.|||.|.||..|.||.|||||||.|
BPUM_1989___y 400 GATCTTGCAGAGAAAGTACTT--GAACACTCAATCGCAACTTTCCAAAAA 447
BSNT_03358___ 448 GAA-AAATTATTAAAAGACATTGACGACGCGTTAGATCGTCATGATAAAG 496
||| .|.||| |.|||||.||.||.||.||..|.||.|||||||||.|||
BPUM_1989___y 448 GAACGACTTA-TGAAAGAGATAGATGAAGCACTTGACCGTCATGATCAAG 496
BSNT_03358___ 497 AGGCATTTGAACAA-TTATCGCGCCAATTAAATCAGC----TCACATAA 540
|..||||| ||.|| |||.|..|..||||| ||| |..|||||
BPUM_1989___y 497 AAACATTT-AATAAGTTAGCAAGAGAATTA----AGCCTTTTGTCATAA 540
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