Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_03355 and BPUM_1986

See Amino acid alignment / Visit BSNT_03355 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:52
# Commandline: needle
#    -asequence dna-align/BSNT_03355___qcrB.1.24716.seq
#    -bsequence dna-align/BPUM_1986___qcrB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03355___qcrB-BPUM_1986___qcrB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03355___qcrB-BPUM_1986___qcrB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03355___qcrB
# 2: BPUM_1986___qcrB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 682
# Identity:     560/682 (82.1%)
# Similarity:   560/682 (82.1%)
# Gaps:          14/682 ( 2.1%)
# Score: 2304.0
# 
#
#=======================================

BSNT_03355___      1 ATGCTGAACAAAATTTATGACTGGGTAGACGAGCGGCTTGATATTACACC     50
                     |||||.|||||.||||||||.||||||||.||||||||.||.||||||||
BPUM_1986___q      1 ATGCTTAACAAGATTTATGATTGGGTAGATGAGCGGCTGGACATTACACC     50

BSNT_03355___     51 GATGTGGAGGGATATTGCCGATCACGAAGTACCGGAACATGTGAATCCCG    100
                     .||.|||||.||||||||.|||||.||.||.||.||.|||||.|||||.|
BPUM_1986___q     51 AATATGGAGAGATATTGCGGATCATGAGGTGCCTGAGCATGTCAATCCAG    100

BSNT_03355___    101 CCCATCATTTCTCTGCGTTTGTGTATTGCTTTGGGGGACTGACGTTTTTT    150
                     |.|||||||||||.||.||||||||.||.|||||.||..|.|||||||||
BPUM_1986___q    101 CACATCATTTCTCCGCTTTTGTGTACTGTTTTGGCGGTTTAACGTTTTTT    150

BSNT_03355___    151 GTAACCGTTATCCAAGTATTATCTGGAATGTTTTTAACGATGTATTATGT    200
                     ||.||.||.||.|||||..|.||.||.||||||||||||||||||||.||
BPUM_1986___q    151 GTGACAGTCATACAAGTCCTTTCGGGCATGTTTTTAACGATGTATTACGT    200

BSNT_03355___    201 GCCTGATATCAAAAATGCCTGGGAATCGGTATATTATTTGCAAAATGAAG    250
                     |||.|||||.|||||.||.||||||||.||.||||||||.||||||||||
BPUM_1986___q    201 GCCAGATATTAAAAACGCATGGGAATCTGTTTATTATTTACAAAATGAAG    250

BSNT_03355___    251 TGGCATTCGGCCAGATTGTCAGGGGGATGCACCACTGGGGTGCGAGCCTG    300
                     |||||||.||.||||||||.||.|||||||||||||||||||||||..|.
BPUM_1986___q    251 TGGCATTTGGTCAGATTGTTAGAGGGATGCACCACTGGGGTGCGAGTTTA    300

BSNT_03355___    301 GTCATTGTGATGATGTTTTTACATACGCTGAGGGTCTTTTTCCAAGGTGC    350
                     ||.|||||.||||||||||||||||||||.|||||||||||||||||.||
BPUM_1986___q    301 GTTATTGTCATGATGTTTTTACATACGCTAAGGGTCTTTTTCCAAGGGGC    350

BSNT_03355___    351 GTATAAAAAACCGCGCGAGCTGAACTGGATTGTCGGTGTGCTGATCTTTT    400
                     |||||||||.||..|.|||||.|||||||||||.||||||||.||.||.|
BPUM_1986___q    351 GTATAAAAAGCCTAGAGAGCTCAACTGGATTGTTGGTGTGCTCATTTTCT    400

BSNT_03355___    401 TTGTTATGCTCGGTCTTGGCTTTACAGGCTA---CTTGCTTCCTTGGGAT    447
                     ||||.|||||.||||||||.||||||||.||   ||||   ||.||||||
BPUM_1986___q    401 TTGTGATGCTTGGTCTTGGATTTACAGGTTATCTCTTG---CCATGGGAT    447

BSNT_03355___    448 ATGAAGGCTCTGTTTGCAACAAAAGTCGGGCTGCAGATCGCCGAAGCCAC    497
                     ||||||||.||.|||||.||.||.||.||.||.||.||.||.|||||.||
BPUM_1986___q    448 ATGAAGGCGCTATTTGCGACGAAGGTTGGTCTTCAAATTGCAGAAGCGAC    497

BSNT_03355___    498 GCCTTTGATCGGAACGCAAG---TTAAAACGCTCCTTGCAGGGCATCCGG    544
                     .|||||.||.||   |.|||   |.||||||||.||||||||.|||||.|
BPUM_1986___q    498 ACCTTTCATTGG---GAAAGAGATCAAAACGCTGCTTGCAGGTCATCCTG    544

BSNT_03355___    545 ATATTGTAGGCGCCCAAACGCTGACTAGGTTTTTTGCGATCCATGTATTT    594
                     |.||||||||.||.|||||||||||.||.|||||.||.|||||||| .||
BPUM_1986___q    545 ACATTGTAGGGGCACAAACGCTGACGAGATTTTTCGCTATCCATGT-CTT    593

BSNT_03355___    595 TTTCTT-CCTGCCGCATTGTTCGGGCTGATGGCTGCACATTTTATTATGA    643
                     |||||| ||.||.|||||.||.||||||||||||||.||.||||||||||
BPUM_1986___q    594 TTTCTTGCCAGCGGCATTATTTGGGCTGATGGCTGCCCACTTTATTATGA    643

BSNT_03355___    644 TCCGGAAGCAGGGGATTTCAGGACCGCTTTAA    675
                     |.||.|||||.||.|||||.||||||||.|||
BPUM_1986___q    644 TTCGTAAGCAAGGAATTTCTGGACCGCTATAA    675


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.