Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03336 and BPUM_1970
See
Amino acid alignment /
Visit
BSNT_03336 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:50
# Commandline: needle
# -asequence dna-align/BSNT_03336___ypmA.1.24716.seq
# -bsequence dna-align/BPUM_1970___ypmA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03336___ypmA-BPUM_1970___ypmA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03336___ypmA-BPUM_1970___ypmA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03336___ypmA
# 2: BPUM_1970___ypmA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 171
# Identity: 128/171 (74.9%)
# Similarity: 128/171 (74.9%)
# Gaps: 0/171 ( 0.0%)
# Score: 468.0
#
#
#=======================================
BSNT_03336___ 1 ATGGAAAGTAAAATCGAAATTCTTTCAACAATTAATGTAGAGCATTCTGA 50
.|||||||||||||.||..|.||||||||..||.|..|..|||||||.||
BPUM_1970___y 1 GTGGAAAGTAAAATAGAGGTACTTTCAACTGTTCACATTAAGCATTCAGA 50
BSNT_03336___ 51 TGATCTGTATAAAATTGTGGACACATTGAATCGTACACTGAAAAGAGACA 100
.||.||||||||||||||.|||..||||||..|.||.||.||||||||..
BPUM_1970___y 51 GGACCTGTATAAAATTGTTGACTTATTGAACAGAACGCTTAAAAGAGAAG 100
BSNT_03336___ 101 ATCTGATGTTCGGCCTTGCGCTGGATGAAGAAAACAAAAACCAAGCCGTT 150
||||.|||||.||.|||||..|.|||.|||||.|..||||.|||||..|.
BPUM_1970___y 101 ATCTCATGTTTGGACTTGCATTAGATCAAGAAGATCAAAATCAAGCGATA 150
BSNT_03336___ 151 TTTACCATTTATCGTACGTAG 171
|||||.||.|||||.||.|||
BPUM_1970___y 151 TTTACAATATATCGCACATAG 171
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.