Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03329 and BPUM_1966
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:49
# Commandline: needle
# -asequence dna-align/BSNT_03329___nth.1.24716.seq
# -bsequence dna-align/BPUM_1966___nth.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03329___nth-BPUM_1966___nth.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03329___nth-BPUM_1966___nth.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03329___nth
# 2: BPUM_1966___nth
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 671
# Identity: 510/671 (76.0%)
# Similarity: 510/671 (76.0%)
# Gaps: 19/671 ( 2.8%)
# Score: 1906.0
#
#
#=======================================
BSNT_03329___ 1 GTGTT---AAATCTAAAACAAAT---TGAATTCTGTTTAGACAAGATAGG 44
.|||| ||| ||||||||| |||| ||||||||.|..|||||
BPUM_1966___n 1 ATGTTATCAAA---AAAACAAATCAATGAA---TGTTTAGATATTATAGG 44
BSNT_03329___ 45 TGACATGTTTCCTCATGCGGAGTGTGAACTGGTTCATTCCAATCCTTTTG 94
.||.||||||||..|.||.||||||||.||.||||||||||||||.||||
BPUM_1966___n 45 AGATATGTTTCCAGAAGCTGAGTGTGAGCTAGTTCATTCCAATCCATTTG 94
BSNT_03329___ 95 AATTAGTGGTGGCTGTTGCTTTATCTGCGCAATGTACAGATGCACTTGTA 144
||.|.|||.|.|||||.||..|.||.|||||.||||||||.|..||.||.
BPUM_1966___n 95 AACTTGTGATCGCTGTGGCACTCTCAGCGCAGTGTACAGACGTGCTCGTC 144
BSNT_03329___ 145 AACAGAGTGACCAAAACATTATTCCAAAAATATAAACGGCCGGAAGACTA 194
||||.||||||||||||.|||||.||||||||||||...||.||||||||
BPUM_1966___n 145 AACAAAGTGACCAAAACGTTATTTCAAAAATATAAAACACCAGAAGACTA 194
BSNT_03329___ 195 TTTGGCTGTTCCGCTGGAAGAGCTTCAGCAGGATATTAAATCAATCGGTT 244
|||...|||.||.||.|||||..|.|||||.||||||...||.||.|||.
BPUM_1966___n 195 TTTAAGTGTACCACTTGAAGAATTGCAGCAAGATATTCGTTCGATTGGTC 244
BSNT_03329___ 245 TATATCGTAATAAAGCGAAAAATATTCAAAAGCTGAGTAAAATGATTATT 294
|.|||||.||||||||.|||||||||||||||.||||.||||||.|.|||
BPUM_1966___n 245 TTTATCGAAATAAAGCCAAAAATATTCAAAAGTTGAGCAAAATGCTAATT 294
BSNT_03329___ 295 GAAGATTACGGCGGAGAAGTGCCGAGAGACCGCGATGAGCTTGTCAAACT 344
|||||.||.|||||.||||||||.|..||.||.|||||||||||.||.||
BPUM_1966___n 295 GAAGAATATGGCGGGGAAGTGCCTAAGGATCGGGATGAGCTTGTGAAGCT 344
BSNT_03329___ 345 GCCAGGGGTCGGGAGAAAGACCGCAAACGTAGTGGTATCCGTTGCGTTTG 394
.||.|||||.||..||||.||.|||||.||.||.||.||.||.||.||||
BPUM_1966___n 345 TCCTGGGGTGGGCCGAAAAACAGCAAATGTTGTCGTTTCGGTCGCTTTTG 394
BSNT_03329___ 395 GCGTGCCGGCCATAGCCGTAGATACCCATGTGGAGAGAGTCAGCAAACGA 444
|.|||||.||.||.||.||.|||||.|||||.||..|.||||||||.|||
BPUM_1966___n 395 GGGTGCCAGCAATTGCAGTCGATACACATGTAGAACGTGTCAGCAAGCGA 444
BSNT_03329___ 445 TTGGGCATTTGCCGGTGGAAGGACTCGGTTCTGGAAGTTGAAAAGACGCT 494
.|.||.||.|||||.||||||||.||.|||||.|||||.|||.|.||..|
BPUM_1966___n 445 CTTGGAATCTGCCGCTGGAAGGATTCTGTTCTCGAAGTAGAACAAACCTT 494
BSNT_03329___ 495 GATGCGCAAGGTTCCCAAAGAAGATTGGTCCGTTACGCATCACCGGCTTA 544
.|||...|||||.||..|||||||||||||.||.|||||||||||.||.|
BPUM_1966___n 495 AATGAAGAAGGTACCAGAAGAAGATTGGTCTGTGACGCATCACCGCCTCA 544
BSNT_03329___ 545 TTTTCTTCGGCAGATATCACTGTAAAGCCCAATCTCCGCGCTGTGCGGA- 593
|.||.||.||||||||||||||.||.|||||...|| |||.|||||.|
BPUM_1966___n 545 TCTTTTTTGGCAGATATCACTGCAAGGCCCAGCGTC--CGCAGTGCGAAT 592
BSNT_03329___ 594 -GTGTCCGCTGCTTTCTTTGTGCAGAGAAGGGCAGAAGAGGGATAAAAAA 642
.|||||.||.|||..|.||||.||||||||||||||||||...||||||
BPUM_1966___n 593 CTTGTCCACTTCTTGATATGTGTAGAGAAGGGCAGAAGAGGCTGAAAAAA 642
BSNT_03329___ 643 GGACTGGTGAAAC---GATGA 660
||..|||||||.| .||||
BPUM_1966___n 643 GGGTTGGTGAAGCTGGCATGA 663
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