Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03605 and BPUM_1955
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:08
# Commandline: needle
# -asequence dna-align/BSNT_03605___yqiG.1.24716.seq
# -bsequence dna-align/BPUM_1955___yqiG.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03605___yqiG-BPUM_1955___yqiG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03605___yqiG-BPUM_1955___yqiG.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03605___yqiG
# 2: BPUM_1955___yqiG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1208
# Identity: 720/1208 (59.6%)
# Similarity: 720/1208 (59.6%)
# Gaps: 232/1208 (19.2%)
# Score: 2137.0
#
#
#=======================================
BSNT_03605___ 1 GTGCGAATCCAAACGAAAGAAGATGATCAAATGAATCCTAAGTATAAGCC 50
BPUM_1955___y 0 -------------------------------------------------- 0
BSNT_03605___ 51 ACTTTTTGAACCATTTACGTTTAAAAGCGGCGTTACAATCGACAACCGGA 100
BPUM_1955___y 0 -------------------------------------------------- 0
BSNT_03605___ 101 TCGCAGTAGCACCGATGACTCATTACGCTTCTAATGAAGACGGTACAATA 150
|||||.||.|.||.||||.|.||.||.||.||.||.
BPUM_1955___y 1 --------------ATGACACACTTCGGTTCTCACGAGGATGGCACTATT 36
BSNT_03605___ 151 TCTGAAGCGGAGCTCGACTACATCATCCCCCGTTCAAAAGAGATGGGAAT 200
|||.|||.|||..|.||.|.|||.|...|..|.||.|..||.|||||.||
BPUM_1955___y 37 TCTAAAGAGGAAATTGATTTCATTACAGCTAGATCTAGTGATATGGGCAT 86
BSNT_03605___ 201 GGTGATTACAGCCTGCGCAAATGTTACACCGGACGGAAAAGCATTCCCCG 250
||||||.|||||.||.||.||.||.||.||.||.||.||.|||||....|
BPUM_1955___y 87 GGTGATCACAGCATGTGCGAACGTGACTCCAGATGGTAAGGCATTTGAAG 136
BSNT_03605___ 251 GGCAGCCGGCCATC------CATGACGATTCCAACATTCCAGGTTTAAAA 294
|.|||||..|.||| .||||.||| ||.||.||..|.|||
BPUM_1955___y 137 GACAGCCTTCTATCGCAAGAGATGAAGAT------ATACCTGGCCTGAAA 180
BSNT_03605___ 295 AAGTTAGCACAAGCCATTCAGGCACAAGGCGCTAAAGCTGTTGTACAAAT 344
||..||||....||.|||||||||.|.||..|.|||||..|..|.|||||
BPUM_1955___y 181 AAACTAGCTTCTGCGATTCAGGCAAAGGGAACAAAAGCCATCATTCAAAT 230
BSNT_03605___ 345 TCATCACGGCGGTATTGAGTGC---CCGTCTGAGCTCGTTCCTCAACAG- 390
||||||||||||..||.|| || || ||.|.||.|||| |||..|
BPUM_1955___y 231 TCATCACGGCGGCTTTCAG-GCTCTCC--CTCACCTAGTTC--CAAATGG 275
BSNT_03605___ 391 -GATGTTGTGGGGCCAAGTGACGTGTTTGATAACGGCAAACAAATTGCTC 439
|||||.||.|.||||||||||||||||.|..|.||.|||||.||.||.|
BPUM_1955___y 276 TGATGTGGTTGCGCCAAGTGACGTGTTTAAAGATGGAAAACAGATGGCAC 325
BSNT_03605___ 440 GCGCATTAAAAGAAGAAGAAGTGGAAAACATTGTGAAGGCTTTTGGAGAA 489
|..|.|||||||||||.|||.|.|...|.|||.|..|..|||||..||||
BPUM_1955___y 326 GTTCTTTAAAAGAAGAGGAAATTGTCCATATTATTGACTCTTTTAAAGAA 375
BSNT_03605___ 490 GCGACAAGACGCGCCATTGAAGCCGGCTTTGACGGTGTCGAAATTCACGG 539
|||||||||||.||..|.|||||.||.|||||||||||.|||||.|||||
BPUM_1955___y 376 GCGACAAGACGAGCGGTCGAAGCAGGATTTGACGGTGTGGAAATCCACGG 425
BSNT_03605___ 540 TGCAAACGGCTACTTAATTCAGCAGTTTTATTCTCCGAAAACCAATCAGC 589
|||||||||.||..||.|.|||||.|||||.||.|||.|.|.||||||||
BPUM_1955___y 426 TGCAAACGGTTATCTATTACAGCAATTTTACTCCCCGCATAGCAATCAGC 475
BSNT_03605___ 590 GCACGGATCGCTGGGGAGGAAGCGATGAAAAACGATTAGCCTTCCCGCTC 639
|.||.||||..||||||||||..||.|||||.||..||||.|||||..||
BPUM_1955___y 476 GGACAGATCAGTGGGGAGGAAATGAAGAAAAGCGTCTAGCTTTCCCTATC 525
BSNT_03605___ 640 GCTATTGTCGATGAAGTGAAAAAAGC---CGCTTCAGAA-CATGCG---- 681
|||.||||.||||.|||.|||.|||| || |.|| ||||||
BPUM_1955___y 526 GCTGTTGTGGATGCAGTAAAAGAAGCAATCG----AAAAGCATGCGACAA 571
BSNT_03605___ 682 AAGGGTGCGTTCTTAGTCGGCTACCGTCTGTCTCCGGAAGAACCTGAGAC 731
|| .||||..|..|.||.||.||..|.||.||.||||||||.||.||
BPUM_1955___y 572 AA----CCGTTTATCTTTGGATATCGATTATCCCCTGAAGAACCAGAAAC 617
BSNT_03605___ 732 ACCGGGATTGACAATGACTGAAACTTATACGCTT-GTTGATG--CTTTAG 778
.||.||.||.||.|||||.||.||.|.||| ||| ||.|||| |||
BPUM_1955___y 618 GCCTGGTTTAACGATGACAGAGACGTTTAC-CTTAGTCGATGTTCTT--- 663
BSNT_03605___ 779 GGGATAAAGAA-----TTGGATTATCTTCATATCTCACTGATGGACGTGA 823
|.||.||| || ||||||.|.||||||||..|.|||||..|..
BPUM_1955___y 664 ---AAAACGAAAAACCTT-GATTATTTGCATATCTCTTTAATGGAGATTG 709
BSNT_03605___ 824 ACTCAAAAGCGCGCCGCGGTGCAGATCCGACTCGCACACGCATGGACTTA 873
||||.|||||..|.||||||||||||.||..|...||.||.|||||..|.
BPUM_1955___y 710 ACTCTAAAGCAAGACGCGGTGCAGATACGGATAAGACGCGTATGGAGCTG 759
BSNT_03605___ 874 TTGAATGAACG-TGTCG-GAAACAAAGTGCCGCTGATCGCCGTCGGTTCC 921
.|.||.||.|| |||.| ||.|| ..|.|||||.||||..||.|| |
BPUM_1955___y 760 CTCAAAGATCGCTGTGGCGATAC--TCTTCCGCTCATCGGTGTAGG---C 804
BSNT_03605___ 922 ATC--CATT-CCGCTGATGACGCGCT---TGCCGTCATCGAAAACGGTAT 965
|.| |||| |.||.||.||.||.|| ||||...|.|.|| ||.||
BPUM_1955___y 805 AGCGTCATTACAGCCGAAGATGCACTAAGTGCCTATAACCAA---GGAAT 851
BSNT_03605___ 966 TCCGCTAGTCGCTATGGGACGCGAAATTCTAGTTGACCCTGACTGGACGG 1015
||||||..|||||.|.|.|||.|||.|..|.||.|||||.||.|||.|
BPUM_1955___y 852 TCCGCTTATCGCTGTCGCACGTGAACTGATCGTCGACCCAGATTGGGC-- 899
BSNT_03605___ 1016 TAAAAG----TAAAAGAAGGCCGTGAAAAGC-AAATCGAAACAGTGATCA 1060
|||| |.|||||||||.|.| ||||| |.||.|||||.||.||.|
BPUM_1955___y 900 --AAAGAAGATTAAAGAAGGCAGAG-AAAGCGAGATTGAAACTGTCATTA 946
BSNT_03605___ 1061 AAGGCACAGATAAAG--AAAAATATC---ATTTG---CCTGAA------- 1095
||.| ||| |||||..|| ||||| ||.|||
BPUM_1955___y 947 AACG--------AAGCCAAAAAGGTCAGTATTTGATTCCAGAAGGATTGT 988
BSNT_03605___ 1096 ---CCGCTATGGCAAGCAATTGTGAACACGCCAGGCTGGGTGCCTTAT-A 1141
|.|.||||| ||||.|.| || |||||||||.|| .|| .
BPUM_1955___y 989 GGTCTGTTATGG-AAGCGAGT---AA------AGGCTGGGTTCC-GATGG 1027
BSNT_03605___ 1142 AAGATTAA 1149
||||||||
BPUM_1955___y 1028 AAGATTAA 1035
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