Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03290 and BPUM_1945
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:47
# Commandline: needle
# -asequence dna-align/BSNT_03290___ypwA.1.24716.seq
# -bsequence dna-align/BPUM_1945___ypwA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03290___ypwA-BPUM_1945___ypwA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03290___ypwA-BPUM_1945___ypwA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03290___ypwA
# 2: BPUM_1945___ypwA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1574
# Identity: 1049/1574 (66.6%)
# Similarity: 1049/1574 (66.6%)
# Gaps: 136/1574 ( 8.6%)
# Score: 3206.5
#
#
#=======================================
BSNT_03290___ 1 -------ATGGAGATACATACATATGAAAAAGAATTTTTTGATCTTTTA- 42
.||.|| ||.|.||.||||..|||| |||..|||
BPUM_1945___y 1 ATGAGTCTTGAAG-------CACAAGAGAAAGCGTTTT---ATCAATTAC 40
BSNT_03290___ 43 ----AAAAGAATCTCACATTACAGCGAAGCAGTTGCG------TTAATGC 82
||| ||||.|.||.||.| ||.|| ||| |||.|..
BPUM_1945___y 41 TAGGAAA--AATCGCCCACTATA-CGGAG-----GCGCTCCATTTACTTT 82
BSNT_03290___ 83 ACTGGGACTCCAGAACAGGAGCGCCGAAAAACGGC-------TCAGAGGA 125
||||||||||.||||||...|||||.|||||..|| |||||
BPUM_1945___y 83 ACTGGGACTCTAGAACACAGGCGCCTAAAAAAAGCGCCGATTTCAGA--- 129
BSNT_03290___ 126 TCGTGCCGAAAGCATCGGCCAGCTTTCAACAGATATATTCAATATCCAAA 175
||.||||..|||||.||..|.||||..|||||.||.|||||..|.|
BPUM_1945___y 130 ----GCTGAAACGATCGGACAATTATCAAGTGATATTTTTAATATGAAGA 175
BSNT_03290___ 176 CATCAGATCGAATGAAGGAGCTTATCGATGTCCTGTATGAA---CGATTT 222
|.||.|||..|||||..||.|||.|.||.|...|..||.|| |||
BPUM_1945___y 176 CTTCTGATGAAATGAGAGATCTTCTTGACGCATTAAATAAACACCGA--- 222
BSNT_03290___ 223 GATGACTTGTCGGAAGATACGAAAAAAGCAGTGGAACTGGCGAAAAAAGA 272
|||||..||||..|||||||..||||.||..|.|||.|..|..|||||||
BPUM_1945___y 223 GATGAGCTGTCAAAAGATACACAAAAGGCGCTCGAATTATCACAAAAAGA 272
BSNT_03290___ 273 GTACGAAGAGAATAAGAAAATCCCTGAGGCTGAATACAAAGAATACGTGA 322
|||.||.||.||.|..|||||.||..|.|..||||..|||||||||..||
BPUM_1945___y 273 GTATGATGAAAACAGCAAAATTCCGAAAGAAGAATTTAAAGAATACTCGA 322
BSNT_03290___ 323 TTCTGTGTTCAAAGGCAGAAACA-GCGTGGGAGGAAGCGAAAGGA-AAAT 370
||.|....|||||.|||| |.|| |..||||..||||| ||.||| ||||
BPUM_1945___y 323 TTTTACAATCAAAAGCAG-AGCATGTCTGGGTAGAAGC-AAGGGAGAAAT 370
BSNT_03290___ 371 CTGA--TTTCAGCTTGTTTTCTCCTTATTTAGAACAGCTGATTGAATTCA 418
|.|| |||| |.|.|||.|.||.||.|||.|||||||.|||||.||.|
BPUM_1945___y 371 CAGACTTTTC--CCTCTTTGCACCATACTTAAAACAGCTCATTGATTTTA 418
BSNT_03290___ 419 ATAAACGTTTTATTACGTATTGGGGATATC-----AAGAGCATCCTTATG 463
|.||.|||||||||...|||||||| | ||.|.|| ||.||||
BPUM_1945___y 419 ACAAGCGTTTTATTCAATATTGGGG----CGTGAAAAAAACA-CCATATG 463
BSNT_03290___ 464 ATGCATTGCTTGATTTGTTTGAGCCCGGCGTCACGGTAAAGGTGCTTGAT 513
|||...||||..||...|.||||||.|...|.|||||..|...|||.|||
BPUM_1945___y 464 ATGTGCTGCTCAATAACTATGAGCCAGATATGACGGTTGAACAGCTCGAT 513
BSNT_03290___ 514 CAGCTGTTTACTGAGCTGAAGGAAGCGGTTATCCCTCTTGTTAAACAGGT 563
||...||||..||..||....||.||..||.|.|||||.||.|||.|..|
BPUM_1945___y 514 CAAAAGTTTGGTGCACTTCGTGATGCCATTGTTCCTCTCGTGAAAAAAAT 563
BSNT_03290___ 564 -GACAGCTTC----CGGAAATAAACCAGATACAAGCTTTC----TTA--C 602
|| |||.|| | |||||||.||||| ||| ||| .
BPUM_1945___y 564 CGA-AGCCTCTCCTC----ATAAACCGGATAC-----TTCATTTTTATCG 603
BSNT_03290___ 603 AAAAGCGTTCCCGAAAGAAAAGCAAAAAGAGCTCAGTCTGTATTTTTTAC 652
||||| .||.||||..||.||.|||||.||.||.|||||.|..||.|||.
BPUM_1945___y 604 AAAAG-TTTTCCGATCGACAAACAAAAGGAACTGAGTCTTTTCTTCTTAA 652
BSNT_03290___ 653 AGGAGCTTGGCTACGATTTTGATGGCGGAAGACTTGATGAAACCGTTCAT 702
|.||..|.||.||.||.|||||||..|||.|.||.|||..|||.||.|||
BPUM_1945___y 653 AAGAATTAGGGTATGACTTTGATGCAGGACGTCTGGATACAACAGTACAT 702
BSNT_03290___ 703 CCGTTTGCAACTACGCTGAATCGGGGAGACGTTCGGGTCACGACGAGATA 752
||.|||||....||..|||...|.||.||.|||||.||.|||||..|.||
BPUM_1945___y 703 CCATTTGCTGTGACATTGAGCAGAGGGGATGTTCGTGTGACGACCCGTTA 752
BSNT_03290___ 753 TGATGAAAAAGATTTCCGGACGGCGATCTTTGGCACCATTCATGAGTGCG 802
||||||..|.|||||.||||.||||||.||||||||.|||||||||||.|
BPUM_1945___y 753 TGATGAGCATGATTTTCGGATGGCGATTTTTGGCACGATTCATGAGTGTG 802
BSNT_03290___ 803 GGCACGCGATTTACGAGCAAAATATTGATGAAGCACTCAGTGGCACG--A 850
|.||.||.||.||.||||||||.||||||||.||.||.|||||.||| |
BPUM_1945___y 803 GTCATGCCATCTATGAGCAAAACATTGATGAGGCGCTGAGTGGAACGTTA 852
BSNT_03290___ 851 ATTTGTCAGACGGCGCATCAATGGGAATTCATGAATCGCAATCATTATTT 900
.|.||| ||||||.||||||||||.||.||||||||.||.||..|.||.
BPUM_1945___y 853 TTATGT--GACGGCACATCAATGGGGATCCATGAATCACAGTCTCTTTTC 900
BSNT_03290___ 901 TACGAGAATTTTATCGGCCG-CAACAAGCATTTTTGGACACCGTACTATC 949
|..|||||||||||.|||.| ||..||| |.||.||||.|.||||.||||
BPUM_1945___y 901 TTTGAGAATTTTATTGGCAGACATGAAG-ACTTCTGGAAAACGTATTATC 949
BSNT_03290___ 950 AGAAGATTCAAGAAGCATCACCTGAACAGTTCAAGGACATCTCCCTGGAT 999
|.|||.||||||||||.||.|||||.||||||||.||..||||..|.||.
BPUM_1945___y 950 AAAAGCTTCAAGAAGCGTCTCCTGAGCAGTTCAAAGATGTCTCTTTAGAA 999
BSNT_03290___ 1000 GATTTTGTCCGGGCAATCAATGAATCAAAACCTTCATTTATCAGGGTCGA 1049
||.|||||.|..|||.|.||||||||.||.||..|.|.|||..|..|.||
BPUM_1945___y 1000 GAATTTGTGCATGCAGTGAATGAATCGAAGCCAACTTATATTCGAATTGA 1049
BSNT_03290___ 1050 AGCGGATGAATTAACGTATCCTCTTCATATCATCATCCGTTATGAAATTG 1099
|||.|||||..|.||.||.||.|||||.||.||||||||.||||||||||
BPUM_1945___y 1050 AGCAGATGAGCTTACATACCCGCTTCACATTATCATCCGCTATGAAATTG 1099
BSNT_03290___ 1100 AAAAAGCGATTTTTAGCAAT---GAAGTGTCTGTGGAAGATCTGCCGTCG 1146
||||||||||.|| |||| ||||||.|.||.|||||.|||||..|.
BPUM_1945___y 1100 AAAAAGCGATATT---CAATGAAGAAGTGGCGGTCGAAGACCTGCCTGCA 1146
BSNT_03290___ 1147 CTCTGGAATCAAAAATACCAGGATTATTTAGGGATTACACCGCAGACCGA 1196
||.||||||.|||||||..|.|..|||.|.||.|||||.||.|..|..||
BPUM_1945___y 1147 CTGTGGAATGAAAAATATAAAGCATATCTTGGCATTACGCCTCCTAATGA 1196
BSNT_03290___ 1197 CGCAGAGGGGATTTTACAGGACGTCCATTGGGCAGGTGG-AGATTTCGGC 1245
.|||...||.||.||.|||||.||.||.|||.|.|.||| ||.||| ||.
BPUM_1945___y 1197 TGCACTTGGCATCTTGCAGGATGTTCACTGGTCTGATGGTAGCTTT-GGA 1245
BSNT_03290___ 1246 TACTTCCCATCCTATGCGCTCGGCTACATGTATGCGGCTCAGCTGAAACA 1295
||.|||||.||.|||||.||.||.||.|||||||||||.||.|| |||.|
BPUM_1945___y 1246 TATTTCCCTTCATATGCCCTTGGTTATATGTATGCGGCGCAACT-AAAGA 1294
BSNT_03290___ 1296 A-AAAATGCTTGAGGATCTCCCTGAAT---------TTGACGCTCTCTTG 1335
| .|||||.|..|.|||.|.|| |||| |||| ||.
BPUM_1945___y 1295 ACCAAATGATCAAAGATTTACC-GAATTTTGATGAGTTGA-------TTC 1336
BSNT_03290___ 1336 GAAAGAGGAGAGTTCCATCCGATAAAGCAATGGCTGACGGAAA---AGGT 1382
.|||..||....||.|| ||||||||..|||||||.|| || |.||
BPUM_1945___y 1337 AAAATGGGTCTTTTGCA-CCGATAAAAGAATGGCTCAC---AACTCATGT 1382
BSNT_03290___ 1383 GCACATTCACGGAAAACGGAAAAAGCCGTTAGACATTATTAAAGATGCAA 1432
.|||...||.||||||||.||||||||.|..||.||.|||.|||||||.|
BPUM_1945___y 1383 TCACCAGCATGGAAAACGCAAAAAGCCTTCTGAAATCATTCAAGATGCGA 1432
BSNT_03290___ 1433 CAGGAGAAGAGCTGAATGTTCGCTATTTAATTGATTATTTATCAAACAAA 1482
|.||.||.||..|.|||||.|..||||||||.|||||||||.|..|.|||
BPUM_1945___y 1433 CTGGTGAGGAATTAAATGTACAATATTTAATCGATTATTTAACTGATAAA 1482
BSNT_03290___ 1483 TATTCAAATCTCTATCTGTCATAA 1506
|||.|.||.||.|||.||||.|||
BPUM_1945___y 1483 TATACGAAACTGTATTTGTCTTAA 1506
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