Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03287 and BPUM_1941
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:46
# Commandline: needle
# -asequence dna-align/BSNT_03287___bcsA.1.24716.seq
# -bsequence dna-align/BPUM_1941___bcsA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03287___bcsA-BPUM_1941___bcsA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03287___bcsA-BPUM_1941___bcsA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03287___bcsA
# 2: BPUM_1941___bcsA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1233
# Identity: 731/1233 (59.3%)
# Similarity: 731/1233 (59.3%)
# Gaps: 267/1233 (21.7%)
# Score: 2030.5
#
#
#=======================================
BSNT_03287___ 1 ATGGCGTTTATTTTATCCATTGGAACAAGTCTTCCTGCGTATAATGTAAA 50
|||||||..|||.|.||..|||||||.||||..||...|.||.|.||..|
BPUM_1941___b 1 ATGGCGTACATTCTTTCAGTTGGAACGAGTCACCCGAAGCATCACGTGGA 50
BSNT_03287___ 51 CCAAGAGAA-AGCGGCCGAGTTCGCCCGCTATATGTTTCAGCATTCTTTT 99
.| |||.|| |||.||.||.||.||..|.|.|...|||.|.|.|||.|||
BPUM_1941___b 51 TC-AGAAAACAGCTGCTGATTTTGCTAGGTCTCAATTTAAACGTTCGTTT 99
BSNT_03287___ 100 AAGGATATTGACCGGCTGTTATCCT-----CCTTTAAAAACGGGCAAATC 144
||.||||||||||||||| || |.|||.||||.||..||||.
BPUM_1941___b 100 AAAGATATTGACCGGCTG-----CTGAGAGCATTTCAAAATGGAGAAATG 144
BSNT_03287___ 145 CATTCGAGACAGTTTGTTAAGCCGATTGAATGGTATAAAGAGGGGCACAG 194
.|....||.||||||||..||||.|||||||||||| .||..||||..
BPUM_1941___b 145 AAAAGTAGGCAGTTTGTGCAGCCCATTGAATGGTAT---CAGACGCACCA 191
BSNT_03287___ 195 C---TTTGAAGAAAAAAATCAA-ATATACATAGAAGAAACACTG------ 234
| ||||||||.||.|| ||| ||.||..|.|||.||.|.|||
BPUM_1941___b 192 CTCTTTTGAAGAGAAGAA-CAATATCTATTTGGAAAAAGCCCTGACTCAT 240
BSNT_03287___ 235 ---AAACACAGCAGAGCGGCTGTTCGTGAGTGCCTCTCTCATCCGGAATT 281
||||| |||| .||||.| |||
BPUM_1941___b 241 GCAAAACA-AGCA------------------------ATCATAC---ATT 262
BSNT_03287___ 282 -TTTTCAAG-----------------AAGCCATTCC----TTATGAGAAA 309
|.|||||| ||||||.||| |.|.||||
BPUM_1941___b 263 GTCTTCAAGATAAGACGTTTCTGAAAAAGCCAGTCCCAGTTGAAGAGA-- 310
BSNT_03287___ 310 GTGGAAGC--TGTTTTTTTCGTCTCCAGCACAGGCCTTTTC-ACACCGAG 356
|.||.|| |||||||| .|.||.||.||.|| |||.|| ||.||.||
BPUM_1941___b 311 -TTGATGCATTGTTTTTT--ATTTCAAGTACTGG-CTTATCGACCCCAAG 356
BSNT_03287___ 357 TATCGAGGCGCGGCTTATGAATGAACTTCCGTTTTCTCCATATACGAAGC 406
|.|.||.||....||||||||.|..|||||.||||||||.||||||||.|
BPUM_1941___b 357 TCTAGATGCAAAACTTATGAACGTCCTTCCTTTTTCTCCTTATACGAAAC 406
BSNT_03287___ 407 GGATTCCGATTTGGGGGCTTGGCTGTGCAGGAGGAGCCAGC-GGACTTGC 455
|..|.||.||||||||.||.||.||.|.|||.||.| |||| ||.||..|
BPUM_1941___b 407 GAGTACCAATTTGGGGCCTAGGGTGCGGAGGCGGTG-CAGCAGGGCTGTC 455
BSNT_03287___ 456 GCGTGCAGCCGAATACTGCA-AAGCGTATCCTACGGCTTTT--------- 495
|||.||....||||| || ||| |||.|||
BPUM_1941___b 456 GCGGGCTTATGAATA---CATAAG----------GGCGTTTCCAGAAGCA 492
BSNT_03287___ 496 ---GTGCTTGTCATTGCTGCC---GAGCTGTGCAGCCTGACATTCCAGCC 539
||.|||| |||.|||| |||||||||||..|.||.||.|||||
BPUM_1941___b 493 AAGGTACTTG---TTGTTGCCTGTGAGCTGTGCAGTTTAACGTTTCAGCC 539
BSNT_03287___ 540 GGAAGATAAAACAAAAAGCAATCTGATCGGCACCTCGCTT-TTTGGTGAC 588
|.|||||.||.|||||||||||.|.||||||||||| ||| |||||.|||
BPUM_1941___b 540 GCAAGATCAATCAAAAAGCAATTTAATCGGCACCTC-CTTGTTTGGAGAC 588
BSNT_03287___ 589 GGCATTGCCGCAGCTTTATTATGCGGA-GAGAAG--GCG---------GA 626
||.|..||.||.|.|.|.|||...||| |||||| ||| |.
BPUM_1941___b 589 GGGACGGCAGCGGTTCTTTTAACTGGAGGAGAAGCTGCGCTTGAATATGC 638
BSNT_03287___ 627 CCGCAGGATGTCAAAGCTG-CAACTTGCGCCGAAGATA--ATGGACGCCC 673
|| ||.|.|||.|.| | ||.||..|| |.|.||| |
BPUM_1941___b 639 CC-----ATTTAAAAACGGTC--------CCTAAAGTACTAAGCACG--C 673
BSNT_03287___ 674 AATCTGTTTTGATGAAACAATCAGAAGATGTCATGGGCTGGGACTTTACC 723
||||.||....||||||.|.||.||.|||||.|||||||||||||||||.
BPUM_1941___b 674 AATCCGTCACAATGAAAAATTCCGAGGATGTGATGGGCTGGGACTTTACA 723
BSNT_03287___ 724 GATCAAGGATTCAAAGTCATTTTCTCACGAGACATTCC------GACCT- 766
..|.|.||.||....||.|||||||||||.|||||||| ||..|
BPUM_1941___b 724 AGTGACGGCTTTCGGGTTATTTTCTCACGCGACATTCCATCGATGATTTC 773
BSNT_03287___ 767 ----TGGTGGAAAAA-----TGGCTCAAAACAAATGTACAGATTTTTTTG 807
||||..|||.| |||.|||| |||||.
BPUM_1941___b 774 AGGCTGGTTAAAAGAGCAGGTGGATCAA----------------TTTTTA 807
BSNT_03287___ 808 GA----CAAACATA-----------AGCTGTCATTCCATGATATCAGTGT 842
|| |||..||| |.||||| .||
BPUM_1941___b 808 GAGGAGCAAGGATATTCAACTAAAGACCTGTC---------------CGT 842
BSNT_03287___ 843 TTTTTTGGCGCATCCAGGCGGAAAAAAAGTGATCGATGCATACATCAAAA 892
||||.|.||.|||||.||.||.||||||||.||.|||||.||..|..|||
BPUM_1941___b 843 TTTTCTAGCCCATCCTGGTGGGAAAAAAGTAATTGATGCGTATGTTGAAA 892
BSNT_03287___ 893 GTCTCGGGCTGTCGTCA------GAAAAGCTTTCATCTGCGCAAAGCATT 936
|| ||.||.|.| ||..||||.|..|||.| .||||.|.|
BPUM_1941___b 893 GT------CTATCTTTACGAGAGGATCAGCTATTTTCTTC-AAAAGAAGT 935
BSNT_03287___ 937 TTGCAAA-AGCACGGAAATATGTCTTCAGCTACAATCTTGTATGTGATCA 985
...|||| |.||||||||||||||.||.||.|||.|.||||||||.||||
BPUM_1941___b 936 ACTCAAACAACACGGAAATATGTCCTCTGCCACAGTTTTGTATGTCATCA 985
BSNT_03287___ 986 AAGA-------------CCATCTGCAGAA-CGGACATAAAAAGGAAGCTG 1021
|..| |.||||||.||| |||| |.||||
BPUM_1941___b 986 AGCATTTCCTTGAACATCAATCTGCTGAAGCGGA---------GGAGCT- 1025
BSNT_03287___ 1022 AACGAGGACTGATT--GGCGCATTAGGGCCGGGTTTCTCATCAGAATTGC 1069
|||||| || ||.|||.|.||.|||||.||.||.|||||.||||
BPUM_1941___b 1026 ----AGGACT--TTGCGGAGCACTTGGTCCGGGCTTTTCTTCAGAGTTGC 1069
BSNT_03287___ 1070 TG-TTATTCAGCTGGGAAAAGG---GGGCCTGA 1098
|| ||||..|| |||||..||| .|.|.|||
BPUM_1941___b 1070 TGCTTATGAAG-TGGGAGGAGGTCTTGTCATGA 1101
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