Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03276 and BPUM_1934
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:45
# Commandline: needle
# -asequence dna-align/BSNT_03276___ypdP.1.24716.seq
# -bsequence dna-align/BPUM_1934___ypdP.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03276___ypdP-BPUM_1934___ypdP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03276___ypdP-BPUM_1934___ypdP.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03276___ypdP
# 2: BPUM_1934___ypdP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 702
# Identity: 520/702 (74.1%)
# Similarity: 520/702 (74.1%)
# Gaps: 24/702 ( 3.4%)
# Score: 1794.5
#
#
#=======================================
BSNT_03276___ 1 TTGTTTAAT-AATTCGT-TTTGGATCTTTTTTGCGATCATTCATTTTATC 48
||||||||| || .|| ||||||||||.||||||||||||.||||||||
BPUM_1934___y 1 TTGTTTAATGAA--GGTATTTGGATCTTATTTGCGATCATTAATTTTATC 48
BSNT_03276___ 49 ATTGTTCTTTTATTTTATAAAGGATTTGGCAAAATGGGGCTGTTTGTTTG 98
|||||||||.||||||||||||||||||||||.|||||.||.||.||.||
BPUM_1934___y 49 ATTGTTCTTCTATTTTATAAAGGATTTGGCAAGATGGGCCTTTTCGTCTG 98
BSNT_03276___ 99 GATCGGTTTTGCGACAGTCTG-CGCCAACCTCCAAGTCGTCAAAACAGTG 147
|||.||.|||||||| |.|.| |||.|||.|.|||||.||.|||||.||.
BPUM_1934___y 99 GATTGGCTTTGCGAC-GGCAGCCGCTAACTTACAAGTGGTGAAAACCGTT 147
BSNT_03276___ 148 GAACTGTTTGGCTTAACAGCGACACTCGGGAATGTGATGTATGGCACAAT 197
|||.||||||||||||||||.|||||.||.|||.|..||||.||||...|
BPUM_1934___y 148 GAATTGTTTGGCTTAACAGCCACACTTGGAAATATTTTGTACGGCAGTGT 197
BSNT_03276___ 198 CTTTTTTGCGACAGATGTGCTGAATGAAAAATACGGACCAGCTGAAGCCA 247
|||||||||.||.||||||.|||||||.|||||.||||.|..||||||.|
BPUM_1934___y 198 CTTTTTTGCAACGGATGTGTTGAATGAGAAATATGGACAACATGAAGCGA 247
BSNT_03276___ 248 GAAAAGCGGTATGGCTCGGATTCTCAACGCTCCTGACGCTGACATTTGTC 297
.|||||||||.|||.|.||.||..|.||.||..|.||.||.||..|||||
BPUM_1934___y 248 AAAAAGCGGTTTGGATTGGTTTTACGACCCTTTTAACACTAACTATTGTC 297
BSNT_03276___ 298 ATGCAG--GGCGTGCTGCTTTTCGAACCGGCTTCCAGC-GACATATCACA 344
|||||| |||.| |||||||.||.||.|| ||||.| ||.||.|||||
BPUM_1934___y 298 ATGCAGGAGGCAT--TGCTTTTTGATCCTGC-TCCATCTGATATCTCACA 344
BSNT_03276___ 345 AACAGCGCTGGAAACGATCTTCGGATTCCTTCCGCGAGTTGCGTTAGGAA 394
|.||.||.|||||||.||.||.||.||..|.||..|.||.||..|.||.|
BPUM_1934___y 345 ATCATCGTTGGAAACCATATTTGGCTTTATGCCAAGGGTGGCACTCGGCA 394
BSNT_03276___ 395 GTCT-GCTTGCCTTTATCTTCAGCCAAACGCTGGATGTTTATGTATATTC 443
|||| || |||.|.||||.||||.||||.|||.|||||||||||||||||
BPUM_1934___y 395 GTCTCGC-TGCTTATATCATCAGTCAAATGCTAGATGTTTATGTATATTC 443
BSNT_03276___ 444 GGCAATTAGAAGGATATTTCCTTCTGATCG---GCTTTTATGGCTCAGAA 490
|...|||.|..||||||||||.||||||.| || |.|||.|..|.|
BPUM_1934___y 444 GTTTATTCGCCGGATATTTCCCTCTGATGGTGCGC---TCTGGATGCGCA 490
BSNT_03276___ 491 ACGGCGGCAGTACAGCAG-TCAGCCAGCTGTTTGATACATTCATATTCAC 539
|.|..||.||||| |..| |.||||||||..||||||||||.||.|||||
BPUM_1934___y 491 ATGCTGGAAGTAC-GATGATTAGCCAGCTTCTTGATACATTGATTTTCAC 539
BSNT_03276___ 540 TTCAGTCGCCTTTCTCGGCATTTATCCGGCAGGCGTGTGGCTTCATATTT 589
..|..|.||||||||.||||..|||||..|....||.|||.||.|.||.|
BPUM_1934___y 540 GACCATTGCCTTTCTTGGCACGTATCCAACTCAAGTATGGATTGAAATCT 589
BSNT_03276___ 590 TTATTTCTACATATTTGATTAAGTTTGCGGTATCTTTGATTTCATTGCCT 639
||||..|.||||||.|.|||||.|||...||..||..||||||....||.
BPUM_1934___y 590 TTATCACGACATATGTCATTAAATTTATCGTCGCTGCGATTTCCACACCA 639
BSNT_03276___ 640 TATGCTTATGCAGCCAAAAAAATGATACCTAAAGATGAAAGGAGTTCA-T 688
||.|||||||||||.|||||||||.|.||....||||||||| ||..| |
BPUM_1934___y 640 TACGCTTATGCAGCGAAAAAAATGGTTCCACTTGATGAAAGG-GTGAAGT 688
BSNT_03276___ 689 AA 690
||
BPUM_1934___y 689 AA 690
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