Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03245 and BPUM_1910

See Amino acid alignment / Visit BSNT_03245 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:43
# Commandline: needle
#    -asequence dna-align/BSNT_03245___ypmP.1.24716.seq
#    -bsequence dna-align/BPUM_1910___ypmP.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03245___ypmP-BPUM_1910___ypmP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03245___ypmP-BPUM_1910___ypmP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03245___ypmP
# 2: BPUM_1910___ypmP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 288
# Identity:     165/288 (57.3%)
# Similarity:   165/288 (57.3%)
# Gaps:          72/288 (25.0%)
# Score: 442.5
# 
#
#=======================================

BSNT_03245___      1 TTGTTACTCAAAAGCCTAGAGTTCAAACGCGATGACGGGAT-----TCAG     45
                     .||.|.|||||||...||...||.|.||| |||    ||||     ||||
BPUM_1910___y      1 GTGCTGCTCAAAACAATATGTTTTAGACG-GAT----GGATGGAGCTCAG     45

BSNT_03245___     46 GTGAAAGTGACAGAAATACCTGTATTAAAGGAAGATGAGCACTATTTCTT     95
                     .|.||.||.||||||.|.||||||.||||||.||||||||...|||..||
BPUM_1910___y     46 ATCAAGGTAACAGAAGTTCCTGTACTAAAGGGAGATGAGCCGCATTGTTT     95

BSNT_03245___     96 TATGTTACATCACC-----ATTTGCAATTCTACTTAAAAGAAGTGTTTTC    140
                     .|||    .|||||     |.||| ||...|.|||.|||.||||.|.|..
BPUM_1910___y     96 CATG----CTCACCTTTAGACTTG-AAGCTTTCTTGAAAAAAGTCTATGT    140

BSNT_03245___    141 ATCAAACAG----CAGGGCAAAAGTGTATTCTTTCCGACATTATATGAAG    186
                     |||.|| ||    .|||||   .|||||.||||||.||.|..||.||||.
BPUM_1910___y    141 ATCTAA-AGGAAAGAGGGC---TGTGTACTCTTTCAGAGAGGATGTGAAA    186

BSNT_03245___    187 CG--CCGGATGAAGTGG-----------GCAGAT-TATCAGG--------    214
                     ||  .||  |.||||||           |||||| |||||||        
BPUM_1910___y    187 CGTAACG--TCAAGTGGAGCACATATGAGCAGATCTATCAGGAGCCTACA    234

BSNT_03245___    215 CTGTATTTCATCAAGAGGTGTTAAAGCACAACGCGTAA    252
                     |||                    ||.|||||.||||||
BPUM_1910___y    235 CTG--------------------AAACACAATGCGTAA    252


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