Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03212 and BPUM_1891

See Amino acid alignment / Visit BSNT_03212 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:42
# Commandline: needle
#    -asequence dna-align/BSNT_03212.1.24716.seq
#    -bsequence dna-align/BPUM_1891.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03212-BPUM_1891.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03212-BPUM_1891.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03212
# 2: BPUM_1891
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 311
# Identity:     180/311 (57.9%)
# Similarity:   180/311 (57.9%)
# Gaps:          61/311 (19.6%)
# Score: 440.5
# 
#
#=======================================

BSNT_03212         1 ---ATGAAAACATGCGAATGGTGCGGCGAGCTTGAAG----CGGTGCCCG     43
                        .||   |||||.||.|||||.|..||...|.|||    ||    |.|
BPUM_1891          1 TTGCTG---ACATGTGATTGGTGTGAGGAAAATAAAGCAAACG----CAG     43

BSNT_03212        44 -GCAGGAAC-ACGGTGTACTGGGAGCTCCCTGA----TGGAACGAGGGCT     87
                      ||||  || ||.||.||.|||||    .||||    |||.||.....|.
BPUM_1891         44 AGCAG--ACAACAGTCTATTGGGA----ACTGATCACTGGCACACAATCC     87

BSNT_03212        88 ATAGAACTGACAGACACCCCTGCCATGGTATGTTCTTCC------TGCGG    131
                     ||.|||.|.|..||.||.||..||||      |||.|.|      |||||
BPUM_1891         88 ATTGAAATCATCGAAACACCGTCCAT------TTCCTGCACGCATTGCGG    131

BSNT_03212       132 TATGACCTATCAAGAGGAAAACACGGTTAAGGAGATTGAGGATCAGCTGC    181
                     ||||||.||||||.||||..|.|||||.||.||.||.||.|||||..|..
BPUM_1891        132 TATGACATATCAAAAGGATGAGACGGTCAAAGAAATAGAAGATCAATTAA    181

BSNT_03212       182 TTTTAAT---TCAAACAAAAAAACTGCCTGAAAGCCTGACATATCAGCA-    227
                     |||||.|   |||.||   ||||||.||.||||...|..|||||.|..| 
BPUM_1891        182 TTTTAGTGGATCAGAC---AAAACTTCCAGAAAAAATTTCATATGAAGAA    228

BSNT_03212       228 -----GCTCATGGAGACAGAAAGAATT-TTGAAACGCAACTATTTTGACT    271
                          |..||||||| |.|      || ||.||.||.||.||.|||||||
BPUM_1891        229 TTAATGAGCATGGAG-CGG------TTATTAAAGCGAAATTACTTTGACT    271

BSNT_03212       272 TCTCCTGA---    279
                     |.||.|.|   
BPUM_1891        272 TTTCATCATAA    282


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