Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03205 and BPUM_1886
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:41
# Commandline: needle
# -asequence dna-align/BSNT_03205___yodM.1.24716.seq
# -bsequence dna-align/BPUM_1886.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03205___yodM-BPUM_1886.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03205___yodM-BPUM_1886.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03205___yodM
# 2: BPUM_1886
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 730
# Identity: 387/730 (53.0%)
# Similarity: 387/730 (53.0%)
# Gaps: 239/730 (32.7%)
# Score: 894.5
#
#
#=======================================
BSNT_03205___ 1 TTGTACAAGCCCGTTAGTTTGTTTCT--TTTCTTTCTCATTCTAGCTGCG 48
||.|.|.||| |.||||| |.|||.||..||..
BPUM_1886 1 ----------------GTGTATATCTTATGTCTTT-TGATTTTATTTGGC 33
BSNT_03205___ 49 GCCATTCATACAAATGCT--GTTCA----ATC---TGCAGATGAAGCAAT 89
||||| |||| |.||| ||| |||.|.|.|||||.|
BPUM_1886 34 GCCAT---------TGCTGCGCTCATGGTATCTGGTGCGGGTCAAGCATT 74
BSNT_03205___ 90 AAGCAAGGCAGCTGTTTTGATCCG----------TCAGCCATGGCTT--- 126
...||| .|||.|..|||.|| || ||||.| |..|||
BPUM_1886 75 GGACAA-CCAGATCATTTTAT-CGTTTGAGAGAATCAGAC-TCCCTTTTT 121
BSNT_03205___ 127 --AATGAAGTCA---------TGACGGGGATCAC----GCATCTTGGTGC 161
|||||.|||| ||||.| || ||| ||.||||
BPUM_1886 122 TAAATGATGTCATGCTGACTTTGACAG-----ACTTTGGCA--TTAGTGC 164
BSNT_03205___ 162 TTCTTCTTTTCTGCTC---CCTCTAATTGTCA---TCATTGGAGCAGGCA 205
.|||||| ||..|.||..||| |||.||..||
BPUM_1886 165 ---------GCTGCTCGTGCCCATCATGCTCATTTTCAGTGTCGC----- 200
BSNT_03205___ 206 TGTTT-TTCTACAGAAAAACATGGGACGGC-------CTGT--TGATGCT 245
||| ||| |.|.|.||.| || ||.| |||||||
BPUM_1886 201 --TTTATTC-ATATATAAGC--------GCTATTACTCTATCATGATGCT 239
BSNT_03205___ 246 CTTAGTAT----TCGGCACAGATCGGCTGTTAAACAAAGTCTTAA--AAG 289
.||..||| || .||||| ||.|||...|||| |.|
BPUM_1886 240 TTTTCTATTATATC-TCACAG-----------AAAAAACCATTAATCATG 277
BSNT_03205___ 290 AATGGATCGAAAGAGTGAGGCCTGATTTTGC-----ACCG---------- 324
|| |.||| |||.||| ||||| |.||
BPUM_1886 278 AA-----CTAAA-----AGGGCTG--TTTGCTAGAGAGCGTCCAGCCTTT 315
BSNT_03205___ 325 ------CTGGTTCATGAATCATCCTTCAGTTTTCCGAGCGGCCATTCCAT 368
||.||..|||||.|.|..|.|||.|||||||||||.|||||.||
BPUM_1886 316 GATCATCTTGTCAATGAAACGTATTACAGCTTTCCGAGCGGACATTCGAT 365
BSNT_03205___ 369 GAATGCTGCTTGTGTCTATCCTGTTATTGCCTACTTTTTAG-TGAAACAC 417
||||||.||.....|||||||..||||.||.|||.|..|.| |||||
BPUM_1886 366 GAATGCAGCCACCATCTATCCGTTTATAGCTTACCTACTCGTTGAAA--- 412
BSNT_03205___ 418 CTCCCGTTTTTG--TCC--------AAGCATA---AAAAAATGGTATAT- 453
|| ||| ||| |.| |||||||.||.|||
BPUM_1886 413 ----------TGATTCCATGGCTGAAAG-AAAGGCAAAAAATCGTCTATT 451
BSNT_03205___ 454 --ATCATAGCCGGTGTAAT-TGCTGTT-TTA--GTCGGCATAAGCAGAGT 497
||||.|| || || || |||| ||| .|.||..|.||||||.|
BPUM_1886 452 TGATCACAG--GG----ATCTG-TGTTCTTATGATTGGGGTCAGCAGAAT 494
BSNT_03205___ 498 GTATCTGGGGGTTCATTTTGTGACAGATGTGTTAGGCGGCTT-----TAG 542
||||.|.||.|||||||||.|||||||||||..|||.||.|| |||
BPUM_1886 495 GTATATCGGCGTTCATTTTTTGACAGATGTGGCAGGTGGTTTTGCGATAG 544
BSNT_03205___ 543 CCTCGGCTTGCTTCTGTTTTTCC----TAGTAAAAGGTTTTGACGAAAAG 588
|.|||||| ||.|||| |.||||||.| .||||||||||
BPUM_1886 545 ----GACTTGCT----TTATTCCTCATTTGTAAAAAG-ATTGACGAAAA- 584
BSNT_03205___ 589 ATTAAGCGGT------TTCGACAAAAATAG 612
||| || ||||||||||.|||
BPUM_1886 585 ATT-----GTCTGTCATTCGACAAAAGTAG 609
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