Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03156 and BPUM_1864
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:39
# Commandline: needle
# -asequence dna-align/BSNT_03156___yojN.1.24716.seq
# -bsequence dna-align/BPUM_1864.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03156___yojN-BPUM_1864.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03156___yojN-BPUM_1864.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03156___yojN
# 2: BPUM_1864
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 944
# Identity: 643/944 (68.1%)
# Similarity: 643/944 (68.1%)
# Gaps: 118/944 (12.5%)
# Score: 2110.5
#
#
#=======================================
BSNT_03156___ 1 ATGACAACTCAAC-TACAGCACTTAACATTGCCGGAAGATATACAA---- 45
||| .|.||| .||| |.||.|.||.|||||.||.|||
BPUM_1864 1 ATG----TTTAACGAACA------ATCACTCCCAGAAGAAATTCAAGCAA 40
BSNT_03156___ 46 ---------CAAAAGCTTTTATCATATAAAG----AGCAGCCTATTTCCC 82
||||||| .|||| ||.||...|.||||
BPUM_1864 41 TGATTGAAGCAAAAGC----------AAAAGGACTAGAAGAAGAATTCC- 79
BSNT_03156___ 83 CGGAGTTTCAATCGCTTATAGGAACATCAGGCTATGAGGCGGAGGATGAA 132
|| .|||||||.||||||...||||||||..|..|||| .|.
BPUM_1864 80 ----GT-----CCGCTTATTGGAACAGGCGGCTATGAATCACAGGA-CAC 119
BSNT_03156___ 133 G-CCATTTTATTTGACGCCATTATTGCATTAGCCATGGGGAAAAATGTCC 181
| |.||..||...||.||.||.||||||.|.||..|.||.||||||||.|
BPUM_1864 120 GTCTATCATACAAGATGCGATGATTGCACTGGCACTTGGCAAAAATGTTC 169
BSNT_03156___ 182 TGCTGAAAGGGCCTACAGGTTCAGGAAAAACAAAGTTGGCAGAAACATTG 231
|..|.||||||||.||.||||||||.||||||||..|.||||||||.||.
BPUM_1864 170 TTTTAAAAGGGCCGACCGGTTCAGGTAAAACAAAACTAGCAGAAACTTTA 219
BSNT_03156___ 232 TCCAGCTAT-TTTAATAAACCGATGCACAGCGTCAACTGTTCAGTCGA-C 279
| |.|||.| |||.|..|.|||||||||||.||.|||||.|||||.|| |
BPUM_1864 220 T-CTGCTTTCTTTCAGCAGCCGATGCACAGTGTGAACTGCTCAGTTGATC 268
BSNT_03156___ 280 TTGGACGCTG--AGGCATTGGTCGGTTATAAAACGATTGAAAATCAATCT 327
|| ||.||.| ||.| ||.|.||.||||||||.|||.|.|||.| |
BPUM_1864 269 TT-GATGCAGAAAGCC--TGATTGGCTATAAAACCATTCACAATGA---T 312
BSNT_03156___ 328 GGCCA---GGCGACAATCGAGTTTGTTTCAGGACCTGTTACAAAGGCAAT 374
||.|| .||..|.||.||.|||.|...|||||||||.|||||.|||||
BPUM_1864 313 GGTCAAGTTGCTTCTATTGAATTTATAGAAGGACCTGTAACAAAAGCAAT 362
BSNT_03156___ 375 GAAGGAAGGCCATTTTCTTTATATAGATGAAATCAATATGGCGAAGCCGG 424
|||..||||||||.||.|.|||||.|||||||||||.|||||||||||.|
BPUM_1864 363 GAAAAAAGGCCATCTTTTATATATTGATGAAATCAACATGGCGAAGCCCG 412
BSNT_03156___ 425 AAACACTGCCTATTTTAAACGGTGTATTAGATTACAGAAAAATGATGACA 474
||||..||||||||||||||||||||.|.||.|||||||||||||||||.
BPUM_1864 413 AAACCTTGCCTATTTTAAACGGTGTACTCGACTACAGAAAAATGATGACC 462
BSNT_03156___ 475 AATCCGTTTACAGGCGAGGTCATACGGGC---TAAAAGCGGTTTCGGAGT 521
|||||.|||||||||||||||.|.||.|| |.|| ||.||.||.||
BPUM_1864 463 AATCCATTTACAGGCGAGGTCGTTCGAGCAGATGAA---GGCTTTGGCGT 509
BSNT_03156___ 522 CATTGCAGCCATCAATGAAGGTTATGTCGGAACTGTTCCTCTGAATGAAG 571
.|||||.||||||||||||||.||||||||.||.||.||.||.|||||||
BPUM_1864 510 AATTGCGGCCATCAATGAAGGCTATGTCGGCACAGTCCCACTAAATGAAG 559
BSNT_03156___ 572 CGTTGAAAAACCGTTTTGTCATCATTGATGTGCCTTATA----------- 610
||||.||||||||||||||..|||||||.||.||.||||
BPUM_1864 560 CGTTAAAAAACCGTTTTGTTGTCATTGACGTTCCATATATCGGCGGTGGC 609
BSNT_03156___ 611 ---TTAAAGGCGAGCTGCTGAAACAAGTGCTCATGTCTCAGTCAGCCCTG 657
|||||| ||..|.|||.|| |||||.| |||
BPUM_1864 610 ATCTTAAAG--GATGTACTGCAA------------TCTCAAT-----CTG 640
BSNT_03156___ 658 ----AAAGACGAGAAA---TTGATTGA-CAGATTTAT-CACGCTTTCCTC 698
|||| ||..|| |||||||| || |||..| || |||.||.||
BPUM_1864 641 TATTAAAG--GATGAACGCTTGATTGATCA-ATTCGTGCA-GCTCTCATC 686
BSNT_03156___ 699 TGACTTGATCGTTCAGGCCCATAACGGACAGGTGTCTGAAGAAGCGGCGT 748
.|||.|.||....|||||.||.|||||.|||||...|||||||||.||.|
BPUM_1864 687 AGACCTCATTACACAGGCGCACAACGGGCAGGTAAGTGAAGAAGCAGCAT 736
BSNT_03156___ 749 CCATCAGAGCTTTAATCGATACATGTGATTTAGCTGC-TTATATTCCGCC 797
||||..|.||..|..|.||.|||||||||.|.|| || .||.||.|||||
BPUM_1864 737 CCATTCGCGCACTGCTAGACACATGTGATCTTGC-GCAATACATCCCGCC 785
BSNT_03156___ 798 GCGTCGTGCCATTGAGCGAGGAATTGTAGAAAAGCTTGATGATGATCGGG 847
||.|||.||..||||.|||||.|||||.||||||||.||.|||||.||||
BPUM_1864 786 GCTTCGGGCAGTTGAACGAGGGATTGTGGAAAAGCTAGAAGATGACCGGG 835
BSNT_03156___ 848 AAAAAGCGGCCGTCCGAAATATTGCAGAAACTCTGTTTGAATGA 891
|||||||.||.||..||||||||||..||||..|.||.||.|||
BPUM_1864 836 AAAAAGCAGCGGTAAGAAATATTGCCCAAACATTATTCGAGTGA 879
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