Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03146 and BPUM_1857
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:38
# Commandline: needle
# -asequence dna-align/BSNT_03146___dhaS.1.24716.seq
# -bsequence dna-align/BPUM_1857___dhaS.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03146___dhaS-BPUM_1857___dhaS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03146___dhaS-BPUM_1857___dhaS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03146___dhaS
# 2: BPUM_1857___dhaS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1551
# Identity: 1092/1551 (70.4%)
# Similarity: 1092/1551 (70.4%)
# Gaps: 129/1551 ( 8.3%)
# Score: 3809.5
#
#
#=======================================
BSNT_03146___ 1 ATGAGTTCTTTAACGATGCAAGTGA---CGAAAAGGCTGGAGACATTTTT 47
|||||.|||..|||..|.|||.|.| |.||| ||.||..|.|||.|
BPUM_1857___d 1 ATGAGCTCTACAACACTTCAAATTAGTTCAAAA---CTCGAATCTTTTCT 47
BSNT_03146___ 48 ACAGGGAACAAAGAAGCTTTATATTGACGGTAAGTTTGTTCCGAGTGCCT 97
.||.||.||.||.||.||.||.|||.|.||..|||||||..|.|| |
BPUM_1857___d 48 CCAAGGGACGAAAAAACTCTACATTAATGGCCAGTTTGTCACAAG----T 93
BSNT_03146___ 98 CAGGGGC--------AACCTTTGACACTCCAAACCCGGCGACCGGCGAAA 139
|| | |||||||...|||||.|||||.||.||.||.||||
BPUM_1857___d 94 CA----CGATAACAAAACCTTTTCAACTCCTAACCCAGCCACAGGTGAAA 139
BSNT_03146___ 140 CC----TTGATGACGCTGTATGAAGCCCAGGCTGC---GGATGTGGACAA 182
|| |||||| |.||||||| |||| ||| .||..|.||..|
BPUM_1857___d 140 CCCTTATTGATG----TATATGAAG--CAGG-TGCAAAAGACATTGATGA 182
BSNT_03146___ 183 AGCGGTTAAAGCTGCCCGGAAAGCCTTTGACCAAGGTGAATGGAGAACAA 232
.||.||.|||||.|||...||||||||| ||.|||...|||.|..|.|
BPUM_1857___d 183 GGCAGTAAAAGCAGCCAAAAAAGCCTTT---CATGGTCCTTGGCGCTCCA 229
BSNT_03146___ 233 TGTCT-------------CCAGCTTCGAGAAGCAGACTGATGTATAAGCT 269
||||| ||.||||| ||||.||||||
BPUM_1857___d 230 TGTCTGCCGCCGAACGCGCCCGCTTC-------------ATGTTTAAGCT 266
BSNT_03146___ 270 GGCGGACTTAATGGAAGAGCATAAAAC-----TGAGCTTGCTCAGCTTGA 314
.||.||.|||||||||| ||||| .|||||.||.||||||||
BPUM_1857___d 267 TGCTGATTTAATGGAAG-----AAAACCAAGAAGAGCTCGCGCAGCTTGA 311
BSNT_03146___ 315 AACACTTGATAATGGGAAACCGATCAATGAAACGACTAATGGAGATATTC 364
|||.||.|||||.|||||.||.||.||||||||.||.||||.||||||.|
BPUM_1857___d 312 AACTCTAGATAACGGGAAGCCAATTAATGAAACAACCAATGCAGATATCC 361
BSNT_03146___ 365 CGCTGGCTATTGAGCATATGCGCTATTACGCCGGCTGGTGTACAAAAATA 414
|.||.||.||.|||||||||||||||||.||.||||||...||.||||||
BPUM_1857___d 362 CTCTCGCAATCGAGCATATGCGCTATTATGCGGGCTGGACAACCAAAATA 411
BSNT_03146___ 415 ACAGGACAGACGATTCCGGTTTCCGGC---GCTTATTTTAATTATACGCG 461
|..|||||.||.|||||.|| |.|| |..||.|||||.|||||.||
BPUM_1857___d 412 AGCGGACAAACCATTCCTGT---CAGCAAAGGATACTTTAACTATACCCG 458
BSNT_03146___ 462 TCATGAGCCTGTCGGTGTCGTCGGCCAGATCATTCCATGGAATTTCCCGC 511
||||||.|||||.||.||.||.||.||.||||||||.|||||.|||||||
BPUM_1857___d 459 TCATGAACCTGTTGGCGTTGTAGGACAAATCATTCCTTGGAACTTCCCGC 508
BSNT_03146___ 512 TCCTGATGGCGATGTGGAAAATGGGCGCGGCACTTGCAACAGGCTGTACA 561
|.||.|||||.||||||||||||||.|||||||||||.||.|||||.||.
BPUM_1857___d 509 TACTTATGGCCATGTGGAAAATGGGTGCGGCACTTGCGACTGGCTGCACC 558
BSNT_03146___ 562 ATCGTCCTCAAACCGGCTGAACAAACACCGCTTTCAGCTCTTTATTTGGC 611
|||||..|.|||||.||.|||||||||||.||.||.||.||.|||||.||
BPUM_1857___d 559 ATCGTGTTAAAACCAGCAGAACAAACACCCCTCTCTGCGCTCTATTTAGC 608
BSNT_03146___ 612 AGAATTAATTGACCAAGCCGGTTTCCCTGCCGGTGTAATCAACATCATCC 661
.||||||.|.||..|||||||.|||||.|..|||||.||.||||||.|.|
BPUM_1857___d 609 TGAATTAGTAGATAAAGCCGGCTTCCCAGAAGGTGTGATTAACATCGTTC 658
BSNT_03146___ 662 CGGGATTCGGTGAAGATGCGGGAGAAGCGCT------GACGAACCACGAA 705
|.|||||.||||||...||.|| ||| |||| ||..|.||
BPUM_1857___d 659 CTGGATTTGGTGAAACAGCTGG-GAA-CGCTTTAACCGATCACCC----- 701
BSNT_03146___ 706 GCGGTTGAT------AAAATTGCCTTTACCGGTTCCACTGAAA---TCGG 746
|||| ||.||||||||.||.||.||.|| || |.||
BPUM_1857___d 702 -----TGATGTAAACAAGATTGCCTTCACGGGGTCAAC---AAGTGTTGG 743
BSNT_03146___ 747 AAAGAAA---ATCATGTCCACCGCAGCGAAAAGCATTAAGCGTGTTACAT 793
|||| ||.|||...|..||.||.|||..|||||||.|.||.||||
BPUM_1857___d 744 ---GAAACTCATTATGGAGAAAGCTGCCAAATCCATTAAGAGAGTCACAT 790
BSNT_03146___ 794 TGGAGCTGGGCGGAAAATCACCTAATATTCTTCTGCCGGATGCGAATTTG 843
|.||.||.||||||||||||||.||.|||.||.||||.|||||..||||.
BPUM_1857___d 791 TAGAACTTGGCGGAAAATCACCAAACATTATTTTGCCAGATGCCGATTTA 840
BSNT_03146___ 844 AAAAAAGCCATCCCGGGCGCTTTAAACGGTGTGATGTTTAACCAGGGCCA 893
||.||||||||.||.||.||||||||.||.||.|||||||||||.||.||
BPUM_1857___d 841 AAGAAAGCCATTCCTGGTGCTTTAAATGGGGTTATGTTTAACCAAGGTCA 890
BSNT_03146___ 894 AGTCTGCTGTGCGGGCTCACGTGTCTTCATTCATAAAGAC------CAAT 937
|||.||||||||.||.||..|.|||||..||| || ||||
BPUM_1857___d 891 AGTATGCTGTGCAGGTTCTAGGGTCTTTGTTC------ACCGGAGTCAAT 934
BSNT_03146___ 938 ATGATGAAGTTGTTGATGAAATGGCGTCCTATGCTGAGTCACTCCGCCAA 987
|||||||.|||||||||.|||||||....|||||....||.|||...|||
BPUM_1857___d 935 ATGATGAGGTTGTTGATCAAATGGCTGAATATGCAACATCCCTCAAACAA 984
BSNT_03146___ 988 GGAGCGGGACTTCATAAAGATACTCAAATCGGGCCTCTCGTAAGCAAGGA 1037
|||||.||.||||||.|||||||.||||||||||||||.||.||.||.||
BPUM_1857___d 985 GGAGCCGGTCTTCATCAAGATACACAAATCGGGCCTCTTGTCAGTAAAGA 1034
BSNT_03146___ 1038 ACAGCATGAGCGCGTTCTTTCCTATATTCAAAAAGGAAAAGATGAAGGAG 1087
|||||||||||||||..|...|||||||.|||||||.|||...|||||.|
BPUM_1857___d 1035 ACAGCATGAGCGCGTGTTAGGCTATATTGAAAAAGGTAAATCAGAAGGTG 1084
BSNT_03146___ 1088 CAAAAGCAGTGACCGGCGGAAGCTGTCCTTTTGAAGCAGGATATTTTGTC 1137
|||.|||.||...|||.||....||.||||.|||.||.||.|||||||||
BPUM_1857___d 1085 CAACAGCTGTTGTCGGTGGCGATTGCCCTTATGAGGCTGGTTATTTTGTC 1134
BSNT_03146___ 1138 GCACCGACTGTGTTTGCGAATGTTGAAGACGAAATGACCATCGCAAAAGA 1187
.|.||.|||||.|||....||||.|||||.||.|||||||||||||||||
BPUM_1857___d 1135 TCCCCTACTGTTTTTAAAGATGTAGAAGATGATATGACCATCGCAAAAGA 1184
BSNT_03146___ 1188 AGAAATTTTCGGACCCGTGCTGACTGCAATTCCGTACGAAACAGTCGATG 1237
||||||.||.|||||.||.||..||||.|||||.|||||..|..|.||.|
BPUM_1857___d 1185 AGAAATCTTTGGACCTGTCCTATCTGCGATTCCTTACGATTCCATTGAAG 1234
BSNT_03146___ 1238 AAGTTATTGAACGGGCAAACCATTCAGAATATGGGCTTGCAGCCGGACTA 1287
||||..|.|||.|.||.|||||.||.||.|||||..|.||.||.|||||.
BPUM_1857___d 1235 AAGTGGTCGAAAGAGCCAACCAGTCTGACTATGGATTAGCCGCAGGACTT 1284
BSNT_03146___ 1288 TGGACAGAGAACGTCAAGCAGGCTCACTATATCGCGGACCGACTTCAAGC 1337
||||||||.|||.|.|||||.||.||..||||.||.|...|.|||.||||
BPUM_1857___d 1285 TGGACAGAAAACTTAAAGCATGCCCATGATATTGCTGCAAGCCTTGAAGC 1334
BSNT_03146___ 1338 CGGAACCGTTTGGGTCAACTGCTATAATGTGTTTGACGCGGCGTCTCCAT 1387
.||.||..||||||||||||||||.||.||.|||||.||.||.||.||.|
BPUM_1857___d 1335 AGGCACGATTTGGGTCAACTGCTACAACGTCTTTGATGCTGCCTCCCCGT 1384
BSNT_03146___ 1388 TTGGCGGTTATAAACAGTCAGGACTCGGACGAGAAATGGGATCATATGCC 1437
||||.||.||.||.||.|||||.||.||..||||||||||||||||.|||
BPUM_1857___d 1385 TTGGAGGATACAAGCAATCAGGTCTTGGCAGAGAAATGGGATCATACGCC 1434
BSNT_03146___ 1438 TTGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTA 1487
.|..|.||.||.|||||||||||||||||.|||.|.|||||..|||||||
BPUM_1857___d 1435 CTTAACAACTATACAGAAGTCAAAAGTGTGTGGATTAACCTCCAAGACTA 1484
BSNT_03146___ 1488 A 1488
|
BPUM_1857___d 1485 A 1485
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