Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01742 and BPUM_1854
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:15
# Commandline: needle
# -asequence dna-align/BSNT_01742___yhfK.1.24716.seq
# -bsequence dna-align/BPUM_1854___yhfK.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01742___yhfK-BPUM_1854___yhfK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01742___yhfK-BPUM_1854___yhfK.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01742___yhfK
# 2: BPUM_1854___yhfK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 787
# Identity: 387/787 (49.2%)
# Similarity: 387/787 (49.2%)
# Gaps: 281/787 (35.7%)
# Score: 810.0
#
#
#=======================================
BSNT_01742___ 1 ATGAAAGTGTT-TTTAATCGGAGCGAACGGACAAATCGGGCAAAGACTCG 49
||||||||.|| .||..| |||||.||.|||||.|..|| .||.||||
BPUM_1854___y 1 ATGAAAGTATTAGTTGCT-GGAGCAAATGGACATACAGG---TAGGCTCG 46
BSNT_01742___ 50 TC--TCTTTA-TTCCAAGATAA---TCCTGA-----------TCATTCCA 82
|| ||.||| ||..||||.|| .|.||| |.||||
BPUM_1854___y 47 TCATTCGTTATTTAAAAGAAAAAGGACATGAGCCGCTTGCTCTTATTC-- 94
BSNT_01742___ 83 TCAGAGCGATGGTCAGAAAAGAAG----------AACAGAAAGCGTCTCT 122
|.|||| .||||.||| ||.|||| ||
BPUM_1854___y 95 -----GAGATG----AAAAACAAGCGGATGCGCTAAAAGAA-------CT 128
BSNT_01742___ 123 TGAAGCTGCCGGTGCAGAAGCTGTGCTTGCGAATCTGGAGGGCAGCCCGG 172
| ||||||..|.||||..|.|...||||.|
BPUM_1854___y 129 T---------GGTGCATTACCTGTCATCGGTGATCTTG------------ 157
BSNT_01742___ 173 AAGAAATCGCCGCTGCGGCAAAAGGCTGTGAC------------------ 204
||||||.||||||
BPUM_1854___y 158 -------------------AAAAGGATGTGACAGATGCTGTGAAACAAGC 188
BSNT_01742___ 205 ----GCGATCATTTTCACAGCCGGTTCCGG--------CGGCAGCACAGG 242
||..||||.||..||||.|||||.|| |||..|||
BPUM_1854___y 189 AGATGCTGTCATCTTTGCAGCTGGTTCAGGCTCAAAAACGGGGGCA---- 234
BSNT_01742___ 243 CTATGATAAAACGCTGCTG--GTGGATCTTGATGGAGCGGCAAAA-GCC- 288
|||||.|||.| || ||||||| |.|.||..|||||| |.|
BPUM_1854___y 235 ----GATAAGACGAT--TGCAGTGGATC---AAGAAGGTGCAAAACGTCT 275
BSNT_01742___ 289 -ATTGAAGCTGCGGACATTGCCGGAATCAAA-------CGGTTTATTATG 330
.||||..|.|||.|.| ||..||| |..|||.|.|||
BPUM_1854___y 276 TGTTGACACAGCGAAAA-------AAGAAAATATTCAGCATTTTGTGATG 318
BSNT_01742___ 331 ATCAGCGCCCTGCAA-GCCCAT------AACC--GTGAAAATTGG--AAT 369
.|.|| ..|||..|| |||.|| |||| | ||||| || ||.
BPUM_1854___y 319 CTGAG-TTCCTATAATGCCGATGATCCAAACCAAG-GAAAA--GGACAAG 364
BSNT_01742___ 370 GAGGCACTCAAACCTTATTATGTGGC-------CAAGCATTATGCTGA-- 410
||.|.| |..||..||||||||.||| .||||| |.|||
BPUM_1854___y 365 GAAGTA-TGGAAATTTATTATGAGGCAAAAAGAAAAGCA----GATGAAC 409
BSNT_01742___ 411 ----TAAA-ATTCTGGAAGCGAGCGGTTTAACCTATACGATTATCCGTCC 455
|||| |.||||| |.||| |||||||.|||.||||.||
BPUM_1854___y 410 ACCTTAAACAGTCTGG--------GCTTT--CCTATACCATTGTCCGACC 449
BSNT_01742___ 456 GGGAGGCCTTCGC--AATGAGCCTGGA----ACGGGAACTGTTT----CA 495
.|| .||||| || .|||| ||| ||.|||| .|.|| |.
BPUM_1854___y 450 AGG-TGCCTT-GCTGCATGA----GGAAAAGACAGGAA-AGATTGAAGCT 492
BSNT_01742___ 496 GCAGCG---------AAGGATC------TGGAGCGGGGATTTATTTCCCG 530
|||||| .|.|||| |.||| |||||..|
BPUM_1854___y 493 GCAGCGCATATTCCAGATGATCAAAACATTGAG---------ATTTCAAG 533
BSNT_01742___ 531 TGAGGACGTTGCAAAAACGGTCATTGCCTCTT-----TAGATGAGAAGAA 575
.||||||||.|| .||.|| |||| .||.|.|..||||
BPUM_1854___y 534 AGAGGACGTAGC---TACTGT-------TCTTGTGGAAAGCTTAACAGAA 573
BSNT_01742___ 576 TAC-----GGAAAATCGGGCCTTTGATCTGACAGAAGGAGATACGCCGAT 620
|.| |.|||||..|.||||||||.|||...||||.||||
BPUM_1854___y 574 TCCAATGTGAAAAATAAGTCCTTTGATTTGATTAAAGGCGATA------- 616
BSNT_01742___ 621 TGCCGAAGCA-TTGAAGAA--ACTATGA--------- 645
||.|| |.|||||| |||..|.
BPUM_1854___y 617 -----AATCAGTAGAAGAAGCACTTCGCACCTTGTAA 648
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