Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03131 and BPUM_1852

See Amino acid alignment / Visit BSNT_03131 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:37
# Commandline: needle
#    -asequence dna-align/BSNT_03131___yocI.1.24716.seq
#    -bsequence dna-align/BPUM_1852___yocI.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03131___yocI-BPUM_1852___yocI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03131___yocI-BPUM_1852___yocI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03131___yocI
# 2: BPUM_1852___yocI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1931
# Identity:    1227/1931 (63.5%)
# Similarity:  1227/1931 (63.5%)
# Gaps:         304/1931 (15.7%)
# Score: 3585.0
# 
#
#=======================================

BSNT_03131___      1 ATGTTACATAGAGCCCAATCCCTTCTGGCTCATTATTTTGGTTATG----     46
                     ||||||.|...|||..||.|.||.|||...||.||||.|||.|.||    
BPUM_1852___y      1 ATGTTAGAACAAGCAGAAGCACTCCTGAAACAATATTATGGCTTTGATGC     50

BSNT_03131___     47 ----AGAAGTTTCGGAGCG------GCCAAGATGAAGCGATCCGCTTGGT     86
                         ||||.|   |||..|      ||||  .||||||||      |.||
BPUM_1852___y     51 CTTTAGAAAT---GGACAGAAACAAGCCA--TTGAAGCGA------TTGT     89

BSNT_03131___     87 GACGGAAGCGAGGCAAA---ATACGGCCTGCATTATGCCGACGGGAGGCG    133
                     .|...||      ||||   ||||.|..||||||||||||||.||.||.|
BPUM_1852___y     90 AAATAAA------CAAAAGGATACCGTTTGCATTATGCCGACAGGCGGAG    133

BSNT_03131___    134 GCAAATCGATTTGCTATCAAATTCCGGCATTAATGTTTGAAGGGACGACG    183
                     |.||.||..||||||||||.||.||.||..|.|||.|.||||||||.|||
BPUM_1852___y    134 GGAAGTCAGTTTGCTATCAGATCCCTGCGCTCATGATGGAAGGGACAACG    183

BSNT_03131___    184 ATCGTCATATCACCGTTGATTTCCTTGATGAAGGATCAAGTTGATGCGTT    233
                     ||||||.||||.|||.|.||.||.||.|||||||||||.||.||||||||
BPUM_1852___y    184 ATCGTCGTATCTCCGCTTATATCTTTAATGAAGGATCAGGTGGATGCGTT    233

BSNT_03131___    234 AGAAGAAGCGGGGATTAACG--CCGCCTACATTAACAGCACACAATCCAA    281
                     |.|.||...|||.||  |||  |..|||...|.||||||||     ||..
BPUM_1852___y    234 AAATGAGATGGGCAT--ACGTTCTTCCTTTTTAAACAGCAC-----CCTG    276

BSNT_03131___    282 TCAG-----GAAATATATGAGAGGCTGAACGGACTCAAAGAAGGGGCTTA    326
                     ||.|     |||||..||||.||||||||...|..|.||.||||||..||
BPUM_1852___y    277 TCTGCATCTGAAATGAATGAAAGGCTGAAAAAATGCGAAAAAGGGGAATA    326

BSNT_03131___    327 TAAGCTTTTTTACATTACACCAGAGCGACTAACGTCCACA--GA--GTTT    372
                     |.|.|||.||||.||.||.||.||.||     |.|.||.|  ||  ||| 
BPUM_1852___y    327 TGAACTTCTTTATATCACCCCTGAACG-----CTTACAAAATGAACGTT-    370

BSNT_03131___    373 ATCCGGATTTTGCAG-GGCATAGAT---------GTTCCTTTGGTCGCAA    412
                            ||||.||| .|| |||||         .|||||||..|.||||
BPUM_1852___y    371 -------TTTTTCAGCTGC-TAGATCGGTTAACGATTCCTTTAATTGCAA    412

BSNT_03131___    413 TAGACGAGGCGCACTGTATTTCTCAATGGGGCCATGATTTCAGGCCAAGC    462
                     |.||.||||||||||||||.||..|.|||||.||||||||.||||||||.
BPUM_1852___y    413 TTGATGAGGCGCACTGTATATCCGAGTGGGGACATGATTTTAGGCCAAGT    462

BSNT_03131___    463 TA----------CAGGAAT-ATTGA--AATCTTGTTCCGTGAATTACACG    499
                     ||          ||.|||| .||||  ||.||          .|.|||  
BPUM_1852___y    463 TATCGCTTCATTCAAGAATGCTTGAACAAGCT----------GTCACA--    500

BSNT_03131___    500 ACAAG-CCTGTTATCATGGCGTTAACAGCAACAGCCACACCCG----AGG    544
                       ||| ||.||.||..|.||.||||||||.|||||.|    ||    |||
BPUM_1852___y    501 --AAGACCGGTGATTGTCGCATTAACAGCTACAGCGA----CGAAAAAGG    544

BSNT_03131___    545 TTCATGATGATATTTGCAAACAGCTGCATATTCAAA-----AAGAAAACA    589
                     |.||..|.|||||.||..|||||||...|||  |||     ||||||.||
BPUM_1852___y    545 TCCAACAAGATATATGTGAACAGCTTGGTAT--AAACGGAGAAGAAACCA    592

BSNT_03131___    590 CGGTATATACAGGATTTTCACGAGAGAATTTAACCTTTAAAGTAGTAAAA    639
                        |.|.|||.||.|||.|..||||.|||||..|||||.||||..|.|||
BPUM_1852___y    593 ---TTTTTACTGGGTTTGCTAGAGAAAATTTGTCCTTTCAAGTGATCAAA    639

BSNT_03131___    640 GGAGAAAATAAAGATCGGTTTAT-AGACGAATATGTGCAAAACAACAGGC    688
                     ||||||||.|..||.||.||||| |.|| |||||.||.|.||.|||||.|
BPUM_1852___y    640 GGAGAAAACAGTGAACGTTTTATCACAC-AATATATGAAGAAAAACAGTC    688

BSNT_03131___    689 ATGAAGCAGGAATTGTCTATACAGCGACCAGAAAAGAAGCTGATCGGATA    738
                     .|||..|.||.|||.|.|||||.||.||..|.||||||||.||||..||.
BPUM_1852___y    689 TTGAGTCTGGCATTATTTATACTGCCACTCGTAAAGAAGCGGATCAAATT    738

BSNT_03131___    739 TATGAGAGATTGAAACGAAATCAA---GTCAGGGCAGGCCGG----TATC    781
                     |||.|..||.|.||   |||.|||   .|||    |.||.||    ||||
BPUM_1852___y    739 TATCATCGACTAAA---AAAACAAAAGATCA----AAGCTGGTGTTTATC    781

BSNT_03131___    782 ATGGAGGTATGGCTGATGATGAGAGAAAAGAGCAGCAGGAAA--GGTTTC    829
                     ||||.||..|||.||||.||..||||.||||||||||  |||  ..|||.
BPUM_1852___y    782 ATGGTGGCTTGGATGATCATACGAGAGAAGAGCAGCA--AAACCTCTTTT    829

BSNT_03131___    830 TTAATGATGAGCTTCAAGTGATGGTGGCAACCTCTGCTTTTGGAATGGGT    879
                     |.||||||||..|.||.||||||||.||.||.||.||.|||||.|||||.
BPUM_1852___y    830 TAAATGATGATATCCAGGTGATGGTCGCCACATCAGCATTTGGCATGGGG    879

BSNT_03131___    880 ATTGATAAATCAAATATCAGATTTGTTCTGCATGCA-CAAATCCCGAAAG    928
                     ||..||||.||.|||.|..|.|||||..|.||| || |||||.||.|..|
BPUM_1852___y    880 ATCAATAAGTCGAATGTGCGTTTTGTGATCCAT-CATCAAATTCCAAGGG    928

BSNT_03131___    929 ATATGGAAAGCTATTATCAAGAGGCAGGACGAGCTGGACGGGACGGTCTT    978
                     ||||.||||||||.||||||||.||.||.||.||.||..|.||.||.|||
BPUM_1852___y    929 ATATAGAAAGCTACTATCAAGAAGCTGGGCGTGCCGGTAGAGATGGGCTT    978

BSNT_03131___    979 GCCAGTGAATGTGTTCTCCTGTTTTCACCGCAGGATATTATGGTGCAGCG   1028
                     |..||||||||..||.|.|||||||||||.||.|.|.|.|.||||||.||
BPUM_1852___y    979 GAAAGTGAATGCATTTTACTGTTTTCACCTCAAGGTGTAAGGGTGCAACG   1028

BSNT_03131___   1029 TTTCTTAATTGAGCAATCAGAACAT-GAAGA-GAAAC-----AAAAGCAG   1071
                     |||..|.|||||.||.|||    || ||||| ||.||     |..||||.
BPUM_1852___y   1029 TTTTCTCATTGAACAGTCA----ATAGAAGATGAGACGCGCTACCAGCAT   1074

BSNT_03131___   1072 GA----TTTAAAAAAGCTGAGACAAATGGTCGACTACTGTCATACGGAAG   1117
                     ||    .|||||    .|.||.||||||||.||.|||||||||||.||..
BPUM_1852___y   1075 GAGTTGCTTAAA----TTAAGGCAAATGGTGGATTACTGTCATACTGAGC   1120

BSNT_03131___   1118 ATTGTCTGCAGCGTTTTATCCTTATG---TATTTCGGAGAAA-AGGAGCC   1163
                     |.|||.||||||..|||   .|.|||   |||||.|...||| ||    |
BPUM_1852___y   1121 AATGTTTGCAGCAATTT---GTGATGGATTATTTTGATCAAACAG----C   1163

BSNT_03131___   1164 TAATGCG---TGCGGACAGTGCGGAAACTGTACC--GATACAAGAGCGGC   1208
                     ||.|.||   |||||..|.|||.|.||.||  ||  |||..|||||.|  
BPUM_1852___y   1164 TAGTTCGCCTTGCGGTAAATGCAGCAATTG--CCTTGATGAAAGAGAG--   1209

BSNT_03131___   1209 CCATGACGTGACGCGG--------GAGGCGCAAATGGTCTTATCTTGTAT   1250
                           |||||.|.||        ||.|||||.|||||.|||||||||| 
BPUM_1852___y   1210 ------CGTGAAGAGGTCACAAGAGAAGCGCAGATGGTGTTATCTTGTA-   1252

BSNT_03131___   1251 CA-TTCGCATGAAAGAACGGTTTGGCAAGACGATGGTTGCCCAGGTGCTT   1299
                     || |..|.|||||.||.||.||.||.||.|.||||.|.|||||.||.||.
BPUM_1852___y   1253 CAGTGAGAATGAATGAGCGATTCGGTAAAATGATGATCGCCCAAGTACTG   1302

BSNT_03131___   1300 GCCGGCTCCAAAAATAAAAAAGTTCTTGAAAACGGC----TTTTCAGA--   1343
                     ||.|||||.|||||.||||||||.||.||     ||    ||||  ||  
BPUM_1852___y   1303 GCAGGCTCTAAAAACAAAAAAGTGCTAGA-----GCTAGGTTTT--GACC   1345

BSNT_03131___   1344 -CCTCTCAACATACGGGATATTAAAACACCAATCCGTTGGC----GAAAT   1388
                      ||||.|.|||||.|...||.|.|||||.||.||    |||    .||||
BPUM_1852___y   1346 GCCTCCCTACATATGCTTTAATGAAACAACATTC----GGCTCAACAAAT   1391

BSNT_03131___   1389 CAGCGATTTTATCGAATTTCTTATTTCTGACGACTTCAT---CAGGATGT   1435
                     |||.||.||.||.||||||.|.|||.|.||.||.|  ||   || .||||
BPUM_1852___y   1392 CAGTGACTTCATTGAATTTTTAATTACAGAAGAGT--ATTTGCA-CATGT   1438

BSNT_03131___   1436 CAGACGGAACGTTTCCGACTCTTTTTGT----CAGTAGTAAAGGAAGGAA   1481
                     |.||.||..|.|..||.||.|||...||    ||    ||||||.|.|||
BPUM_1852___y   1439 CTGAAGGGGCTTACCCAACACTTAAGGTGACCCA----TAAAGGGAAGAA   1484

BSNT_03131___   1482 TGTGCT-----GAAAGGAGAATTATCAGTAGCGAG----AAAAG-AAGCG   1521
                     .|||||     ||.|.|||     .||||     |    ||||| |.|||
BPUM_1852___y   1485 AGTGCTAGTTGGACAAGAG-----GCAGT-----GTATAAAAAGCAGGCG   1524

BSNT_03131___   1522 TTAAAAGCGGCAGCGATTACTGAAAATGACGAGCTATTTGAACGATTGCG   1571
                     .|.|||||.|.|||.|||...||||||||.|..||||||||.||||||.|
BPUM_1852___y   1525 ATCAAAGCAGAAGCTATTCAAGAAAATGATGCACTATTTGAGCGATTGAG   1574

BSNT_03131___   1572 CATGGTTCGGAAAGAAATTGCGGCT-------GATCAGGGTGTTCCGCCA   1614
                      ||.|.|..|||.|||      |||       ||.||.|||||||||||.
BPUM_1852___y   1575 -ATCGCTTAGAATGAA------GCTAGCTAGAGAGCAAGGTGTTCCGCCT   1617

BSNT_03131___   1615 TTTGTTGTTTTCTCTGACCAAACGTTAAAAGAAATGTCAG-----GA---   1656
                     |||||||||||.|||||.|||||.||.||.||||||||||     ||   
BPUM_1852___y   1618 TTTGTTGTTTTTTCTGATCAAACATTGAAGGAAATGTCAGCGGTAGAGCC   1667

BSNT_03131___   1657 --AAACAGCCCGTAAATGATGATGAACTTTTGTCTA---TAAAAGGAGTC   1701
                       |||||          |||||.|||  ||..||.|   |||..||| |.
BPUM_1852___y   1668 TCAAACA----------GATGAAGAA--TTACTCCAAATTAAGGGGA-TT   1704

BSNT_03131___   1702 GGAGAACAAAAAAGAGCAAAATACGGCCGGCTTTTTTTACAAGAAATACA   1751
                     ||.|..||||||||||..||||||||.....||||||||.|||||||.| 
BPUM_1852___y   1705 GGCGCTCAAAAAAGAGAGAAATACGGAGATGTTTTTTTAGAAGAAATTC-   1753

BSNT_03131___   1752 AGCTTAT------GCAAGGATGACAGACTAA   1776
                      |.||||      ..||.|| ||.|.|.|||
BPUM_1852___y   1754 -GTTTATTTATAGAAAAAGA-GAAAAAATAA   1782


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