Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03131 and BPUM_1852
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:37
# Commandline: needle
# -asequence dna-align/BSNT_03131___yocI.1.24716.seq
# -bsequence dna-align/BPUM_1852___yocI.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03131___yocI-BPUM_1852___yocI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03131___yocI-BPUM_1852___yocI.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03131___yocI
# 2: BPUM_1852___yocI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1931
# Identity: 1227/1931 (63.5%)
# Similarity: 1227/1931 (63.5%)
# Gaps: 304/1931 (15.7%)
# Score: 3585.0
#
#
#=======================================
BSNT_03131___ 1 ATGTTACATAGAGCCCAATCCCTTCTGGCTCATTATTTTGGTTATG---- 46
||||||.|...|||..||.|.||.|||...||.||||.|||.|.||
BPUM_1852___y 1 ATGTTAGAACAAGCAGAAGCACTCCTGAAACAATATTATGGCTTTGATGC 50
BSNT_03131___ 47 ----AGAAGTTTCGGAGCG------GCCAAGATGAAGCGATCCGCTTGGT 86
||||.| |||..| |||| .|||||||| |.||
BPUM_1852___y 51 CTTTAGAAAT---GGACAGAAACAAGCCA--TTGAAGCGA------TTGT 89
BSNT_03131___ 87 GACGGAAGCGAGGCAAA---ATACGGCCTGCATTATGCCGACGGGAGGCG 133
.|...|| |||| ||||.|..||||||||||||||.||.||.|
BPUM_1852___y 90 AAATAAA------CAAAAGGATACCGTTTGCATTATGCCGACAGGCGGAG 133
BSNT_03131___ 134 GCAAATCGATTTGCTATCAAATTCCGGCATTAATGTTTGAAGGGACGACG 183
|.||.||..||||||||||.||.||.||..|.|||.|.||||||||.|||
BPUM_1852___y 134 GGAAGTCAGTTTGCTATCAGATCCCTGCGCTCATGATGGAAGGGACAACG 183
BSNT_03131___ 184 ATCGTCATATCACCGTTGATTTCCTTGATGAAGGATCAAGTTGATGCGTT 233
||||||.||||.|||.|.||.||.||.|||||||||||.||.||||||||
BPUM_1852___y 184 ATCGTCGTATCTCCGCTTATATCTTTAATGAAGGATCAGGTGGATGCGTT 233
BSNT_03131___ 234 AGAAGAAGCGGGGATTAACG--CCGCCTACATTAACAGCACACAATCCAA 281
|.|.||...|||.|| ||| |..|||...|.|||||||| ||..
BPUM_1852___y 234 AAATGAGATGGGCAT--ACGTTCTTCCTTTTTAAACAGCAC-----CCTG 276
BSNT_03131___ 282 TCAG-----GAAATATATGAGAGGCTGAACGGACTCAAAGAAGGGGCTTA 326
||.| |||||..||||.||||||||...|..|.||.||||||..||
BPUM_1852___y 277 TCTGCATCTGAAATGAATGAAAGGCTGAAAAAATGCGAAAAAGGGGAATA 326
BSNT_03131___ 327 TAAGCTTTTTTACATTACACCAGAGCGACTAACGTCCACA--GA--GTTT 372
|.|.|||.||||.||.||.||.||.|| |.|.||.| || |||
BPUM_1852___y 327 TGAACTTCTTTATATCACCCCTGAACG-----CTTACAAAATGAACGTT- 370
BSNT_03131___ 373 ATCCGGATTTTGCAG-GGCATAGAT---------GTTCCTTTGGTCGCAA 412
||||.||| .|| ||||| .|||||||..|.||||
BPUM_1852___y 371 -------TTTTTCAGCTGC-TAGATCGGTTAACGATTCCTTTAATTGCAA 412
BSNT_03131___ 413 TAGACGAGGCGCACTGTATTTCTCAATGGGGCCATGATTTCAGGCCAAGC 462
|.||.||||||||||||||.||..|.|||||.||||||||.||||||||.
BPUM_1852___y 413 TTGATGAGGCGCACTGTATATCCGAGTGGGGACATGATTTTAGGCCAAGT 462
BSNT_03131___ 463 TA----------CAGGAAT-ATTGA--AATCTTGTTCCGTGAATTACACG 499
|| ||.|||| .|||| ||.|| .|.|||
BPUM_1852___y 463 TATCGCTTCATTCAAGAATGCTTGAACAAGCT----------GTCACA-- 500
BSNT_03131___ 500 ACAAG-CCTGTTATCATGGCGTTAACAGCAACAGCCACACCCG----AGG 544
||| ||.||.||..|.||.||||||||.|||||.| || |||
BPUM_1852___y 501 --AAGACCGGTGATTGTCGCATTAACAGCTACAGCGA----CGAAAAAGG 544
BSNT_03131___ 545 TTCATGATGATATTTGCAAACAGCTGCATATTCAAA-----AAGAAAACA 589
|.||..|.|||||.||..|||||||...||| ||| ||||||.||
BPUM_1852___y 545 TCCAACAAGATATATGTGAACAGCTTGGTAT--AAACGGAGAAGAAACCA 592
BSNT_03131___ 590 CGGTATATACAGGATTTTCACGAGAGAATTTAACCTTTAAAGTAGTAAAA 639
|.|.|||.||.|||.|..||||.|||||..|||||.||||..|.|||
BPUM_1852___y 593 ---TTTTTACTGGGTTTGCTAGAGAAAATTTGTCCTTTCAAGTGATCAAA 639
BSNT_03131___ 640 GGAGAAAATAAAGATCGGTTTAT-AGACGAATATGTGCAAAACAACAGGC 688
||||||||.|..||.||.||||| |.|| |||||.||.|.||.|||||.|
BPUM_1852___y 640 GGAGAAAACAGTGAACGTTTTATCACAC-AATATATGAAGAAAAACAGTC 688
BSNT_03131___ 689 ATGAAGCAGGAATTGTCTATACAGCGACCAGAAAAGAAGCTGATCGGATA 738
.|||..|.||.|||.|.|||||.||.||..|.||||||||.||||..||.
BPUM_1852___y 689 TTGAGTCTGGCATTATTTATACTGCCACTCGTAAAGAAGCGGATCAAATT 738
BSNT_03131___ 739 TATGAGAGATTGAAACGAAATCAA---GTCAGGGCAGGCCGG----TATC 781
|||.|..||.|.|| |||.||| .||| |.||.|| ||||
BPUM_1852___y 739 TATCATCGACTAAA---AAAACAAAAGATCA----AAGCTGGTGTTTATC 781
BSNT_03131___ 782 ATGGAGGTATGGCTGATGATGAGAGAAAAGAGCAGCAGGAAA--GGTTTC 829
||||.||..|||.||||.||..||||.|||||||||| ||| ..|||.
BPUM_1852___y 782 ATGGTGGCTTGGATGATCATACGAGAGAAGAGCAGCA--AAACCTCTTTT 829
BSNT_03131___ 830 TTAATGATGAGCTTCAAGTGATGGTGGCAACCTCTGCTTTTGGAATGGGT 879
|.||||||||..|.||.||||||||.||.||.||.||.|||||.|||||.
BPUM_1852___y 830 TAAATGATGATATCCAGGTGATGGTCGCCACATCAGCATTTGGCATGGGG 879
BSNT_03131___ 880 ATTGATAAATCAAATATCAGATTTGTTCTGCATGCA-CAAATCCCGAAAG 928
||..||||.||.|||.|..|.|||||..|.||| || |||||.||.|..|
BPUM_1852___y 880 ATCAATAAGTCGAATGTGCGTTTTGTGATCCAT-CATCAAATTCCAAGGG 928
BSNT_03131___ 929 ATATGGAAAGCTATTATCAAGAGGCAGGACGAGCTGGACGGGACGGTCTT 978
||||.||||||||.||||||||.||.||.||.||.||..|.||.||.|||
BPUM_1852___y 929 ATATAGAAAGCTACTATCAAGAAGCTGGGCGTGCCGGTAGAGATGGGCTT 978
BSNT_03131___ 979 GCCAGTGAATGTGTTCTCCTGTTTTCACCGCAGGATATTATGGTGCAGCG 1028
|..||||||||..||.|.|||||||||||.||.|.|.|.|.||||||.||
BPUM_1852___y 979 GAAAGTGAATGCATTTTACTGTTTTCACCTCAAGGTGTAAGGGTGCAACG 1028
BSNT_03131___ 1029 TTTCTTAATTGAGCAATCAGAACAT-GAAGA-GAAAC-----AAAAGCAG 1071
|||..|.|||||.||.||| || ||||| ||.|| |..||||.
BPUM_1852___y 1029 TTTTCTCATTGAACAGTCA----ATAGAAGATGAGACGCGCTACCAGCAT 1074
BSNT_03131___ 1072 GA----TTTAAAAAAGCTGAGACAAATGGTCGACTACTGTCATACGGAAG 1117
|| .||||| .|.||.||||||||.||.|||||||||||.||..
BPUM_1852___y 1075 GAGTTGCTTAAA----TTAAGGCAAATGGTGGATTACTGTCATACTGAGC 1120
BSNT_03131___ 1118 ATTGTCTGCAGCGTTTTATCCTTATG---TATTTCGGAGAAA-AGGAGCC 1163
|.|||.||||||..||| .|.||| |||||.|...||| || |
BPUM_1852___y 1121 AATGTTTGCAGCAATTT---GTGATGGATTATTTTGATCAAACAG----C 1163
BSNT_03131___ 1164 TAATGCG---TGCGGACAGTGCGGAAACTGTACC--GATACAAGAGCGGC 1208
||.|.|| |||||..|.|||.|.||.|| || |||..|||||.|
BPUM_1852___y 1164 TAGTTCGCCTTGCGGTAAATGCAGCAATTG--CCTTGATGAAAGAGAG-- 1209
BSNT_03131___ 1209 CCATGACGTGACGCGG--------GAGGCGCAAATGGTCTTATCTTGTAT 1250
|||||.|.|| ||.|||||.|||||.||||||||||
BPUM_1852___y 1210 ------CGTGAAGAGGTCACAAGAGAAGCGCAGATGGTGTTATCTTGTA- 1252
BSNT_03131___ 1251 CA-TTCGCATGAAAGAACGGTTTGGCAAGACGATGGTTGCCCAGGTGCTT 1299
|| |..|.|||||.||.||.||.||.||.|.||||.|.|||||.||.||.
BPUM_1852___y 1253 CAGTGAGAATGAATGAGCGATTCGGTAAAATGATGATCGCCCAAGTACTG 1302
BSNT_03131___ 1300 GCCGGCTCCAAAAATAAAAAAGTTCTTGAAAACGGC----TTTTCAGA-- 1343
||.|||||.|||||.||||||||.||.|| || |||| ||
BPUM_1852___y 1303 GCAGGCTCTAAAAACAAAAAAGTGCTAGA-----GCTAGGTTTT--GACC 1345
BSNT_03131___ 1344 -CCTCTCAACATACGGGATATTAAAACACCAATCCGTTGGC----GAAAT 1388
||||.|.|||||.|...||.|.|||||.||.|| ||| .||||
BPUM_1852___y 1346 GCCTCCCTACATATGCTTTAATGAAACAACATTC----GGCTCAACAAAT 1391
BSNT_03131___ 1389 CAGCGATTTTATCGAATTTCTTATTTCTGACGACTTCAT---CAGGATGT 1435
|||.||.||.||.||||||.|.|||.|.||.||.| || || .||||
BPUM_1852___y 1392 CAGTGACTTCATTGAATTTTTAATTACAGAAGAGT--ATTTGCA-CATGT 1438
BSNT_03131___ 1436 CAGACGGAACGTTTCCGACTCTTTTTGT----CAGTAGTAAAGGAAGGAA 1481
|.||.||..|.|..||.||.|||...|| || ||||||.|.|||
BPUM_1852___y 1439 CTGAAGGGGCTTACCCAACACTTAAGGTGACCCA----TAAAGGGAAGAA 1484
BSNT_03131___ 1482 TGTGCT-----GAAAGGAGAATTATCAGTAGCGAG----AAAAG-AAGCG 1521
.||||| ||.|.||| .|||| | ||||| |.|||
BPUM_1852___y 1485 AGTGCTAGTTGGACAAGAG-----GCAGT-----GTATAAAAAGCAGGCG 1524
BSNT_03131___ 1522 TTAAAAGCGGCAGCGATTACTGAAAATGACGAGCTATTTGAACGATTGCG 1571
.|.|||||.|.|||.|||...||||||||.|..||||||||.||||||.|
BPUM_1852___y 1525 ATCAAAGCAGAAGCTATTCAAGAAAATGATGCACTATTTGAGCGATTGAG 1574
BSNT_03131___ 1572 CATGGTTCGGAAAGAAATTGCGGCT-------GATCAGGGTGTTCCGCCA 1614
||.|.|..|||.||| ||| ||.||.|||||||||||.
BPUM_1852___y 1575 -ATCGCTTAGAATGAA------GCTAGCTAGAGAGCAAGGTGTTCCGCCT 1617
BSNT_03131___ 1615 TTTGTTGTTTTCTCTGACCAAACGTTAAAAGAAATGTCAG-----GA--- 1656
|||||||||||.|||||.|||||.||.||.|||||||||| ||
BPUM_1852___y 1618 TTTGTTGTTTTTTCTGATCAAACATTGAAGGAAATGTCAGCGGTAGAGCC 1667
BSNT_03131___ 1657 --AAACAGCCCGTAAATGATGATGAACTTTTGTCTA---TAAAAGGAGTC 1701
||||| |||||.||| ||..||.| |||..||| |.
BPUM_1852___y 1668 TCAAACA----------GATGAAGAA--TTACTCCAAATTAAGGGGA-TT 1704
BSNT_03131___ 1702 GGAGAACAAAAAAGAGCAAAATACGGCCGGCTTTTTTTACAAGAAATACA 1751
||.|..||||||||||..||||||||.....||||||||.|||||||.|
BPUM_1852___y 1705 GGCGCTCAAAAAAGAGAGAAATACGGAGATGTTTTTTTAGAAGAAATTC- 1753
BSNT_03131___ 1752 AGCTTAT------GCAAGGATGACAGACTAA 1776
|.|||| ..||.|| ||.|.|.|||
BPUM_1852___y 1754 -GTTTATTTATAGAAAAAGA-GAAAAAATAA 1782
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