Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03117 and BPUM_1849

See Amino acid alignment / Visit BSNT_03117 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:36
# Commandline: needle
#    -asequence dna-align/BSNT_03117___yozB.1.24716.seq
#    -bsequence dna-align/BPUM_1849___yozB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03117___yozB-BPUM_1849___yozB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03117___yozB-BPUM_1849___yozB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03117___yozB
# 2: BPUM_1849___yozB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 549
# Identity:     409/549 (74.5%)
# Similarity:   409/549 (74.5%)
# Gaps:          21/549 ( 3.8%)
# Score: 1454.0
# 
#
#=======================================

BSNT_03117___      1 ATGAACCA-AACAGAA--AATAAACCGAAAAATTACACGGGGATTGTCCT     47
                     |||||  | |||||||  || |||||||||||||..||.||.|||||..|
BPUM_1849___y      1 ATGAA--AGAACAGAATCAA-AAACCGAAAAATTTTACTGGTATTGTGAT     47

BSNT_03117___     48 TACGCTGACAGTTCTGATTAACGGTTTAATCGCAGTGCTGTTTTTTATGC     97
                     .|...|.|||.||...||.|||||.||||||||..|..|.|||||.||||
BPUM_1849___y     48 CATTTTAACAATTGCCATAAACGGATTAATCGCTTTATTATTTTTAATGC     97

BSNT_03117___     98 CTAAATTAGATCAGTTCAGCCATGCGAATATTCACA-TTTTGCCAATGCT    146
                     |.||||.||||.|.||.||.|||..|.||||| ||| |||||||..|.||
BPUM_1849___y     98 CAAAATCAGATAAATTTAGTCATCTGGATATT-ACATTTTTGCCGTTACT    146

BSNT_03117___    147 GAATGCGATATTCAACAGCTTTACGTTTATCTTCTTATTGGCCGCGCTGA    196
                     .|||||..|..|.||||||||||||||||||||.|||.|..|.||.||.|
BPUM_1849___y    147 AAATGCCGTGATGAACAGCTTTACGTTTATCTTTTTACTTTCAGCACTCA    196

BSNT_03117___    197 TTATGATTAAACAGAAAAATATCAAAGCTCACAAACGCTTTATTTTGGCC    246
                     |.|||||||||||.||.||.||.|||||.||.|.|||.|||||.||.||.
BPUM_1849___y    197 TCATGATTAAACAAAAGAACATTAAAGCGCATAGACGATTTATCTTTGCT    246

BSNT_03117___    247 GCGTTCACAACAACATTACTATTTTTGATTTGCTATGTGACGTACCACTC    296
                     ||.||..||||||||.|..|.|||||.||||..||||||||.||.||.||
BPUM_1849___y    247 GCATTTTCAACAACACTGGTCTTTTTAATTTCGTATGTGACCTATCATTC    296

BSNT_03117___    297 GATTGCGGAAAACACGCTCTATGGCGGAGAAGGTATTATGCGCCCGATTT    346
                     .||.||.|...|.||.|..|..||.||||||||.||.||.||.||.||||
BPUM_1849___y    297 AATGGCAGCTGATACCCATTTCGGAGGAGAAGGGATCATCCGTCCAATTT    346

BSNT_03117___    347 ATTTCTTTATTTTAATTACACATATCTGCCTT-TCTGCAATTATTGTGCC    395
                     |.||||||||||||||.||||||||| |.||| ||.|||.|.|||||.||
BPUM_1849___y    347 ACTTCTTTATTTTAATCACACATATC-GTCTTATCAGCAGTCATTGTACC    395

BSNT_03117___    396 GCTTGCGCTGTTTACGCTGATCAGAGGCTTCAGC----ATGCAGGTGGAG    441
                     ||||||.|||.|||||||..|.||||||    ||    |||||.||.|||
BPUM_1849___y    396 GCTTGCCCTGATTACGCTATTTAGAGGC----GCACAGATGCAAGTCGAG    441

BSNT_03117___    442 CGCCACAAAAAAATTGCGAGATGGACAATGCCTCTATGGCTGTATGTAAG    491
                     ||||||...||||||||..|.|||||||||||.||||||||.|||||.||
BPUM_1849___y    442 CGCCACCGTAAAATTGCTCGCTGGACAATGCCGCTATGGCTTTATGTCAG    491

BSNT_03117___    492 CCTTACAGGCGTTATTGTATATTTGATGATTTCACCGTATTA---CTAA    537
                     ||||||.|||||.|||||||||.||||||||||.||.|||||   ||||
BPUM_1849___y    492 CCTTACTGGCGTCATTGTATATATGATGATTTCTCCATATTACAGCTAA    540


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