Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05600 and BPUM_1834

See Amino acid alignment / Visit BSNT_05600 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:12
# Commandline: needle
#    -asequence dna-align/BSNT_05600.1.24716.seq
#    -bsequence dna-align/BPUM_1834___ywmF.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05600-BPUM_1834___ywmF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05600-BPUM_1834___ywmF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05600
# 2: BPUM_1834___ywmF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 707
# Identity:     305/707 (43.1%)
# Similarity:   305/707 (43.1%)
# Gaps:         295/707 (41.7%)
# Score: 725.0
# 
#
#=======================================

BSNT_05600         1 ATGAGACAAAACCATCTGCTGGCAGATGGTTTTTTTATATGCAAAAAAAG     50
                                                                       
BPUM_1834___y      0 --------------------------------------------------      0

BSNT_05600        51 GGGAGCATCGGAACGTTTATTTCCGGGGAGAACAGGAAAAATCGCTACAG    100
                                                                       
BPUM_1834___y      0 --------------------------------------------------      0

BSNT_05600       101 CACTGTTTTTTGAACAAAAGCCGTTTTGGGATGCAGATCTGCACGTGAGG    150
                                                                       
BPUM_1834___y      0 --------------------------------------------------      0

BSNT_05600       151 GGGAATTCAATGTTT-GGTTTTAATGATATGGTGAAGTTTCTG-TGGTCT    198
                              .||||| .|||.|.| ||||||..||.|||| || |||||.
BPUM_1834___y      1 ---------TTGTTTACGTTATCA-GATATGTGGACGTTT-TGCTGGTCG     39

BSNT_05600       199 TTCCTCATTGTTCTGCCGCTTGTACAGATTATACATGTTTCAGGGCACAG    248
                     ||..|..||.||||.||..||||....||..|.|||           ||.
BPUM_1834___y     40 TTTTTTGTTATTCTTCCTATTGTTGCCATCCTGCAT-----------CAA     78

BSNT_05600       249 CTTTATGGC----TTTT----------ATTTTTGGCGGAAAAGGATCGTT    284
                     ||   ||||    ||||          ||.|||||.|.|||.|..||.||
BPUM_1834___y     79 CT---TGGCCATATTTTGGTTGCGTGGATGTTTGGAGCAAAGGTTTCTTT    125

BSNT_05600       285 GGATATAGGCA-TGGGAAAAACGCTGCTTAAAATTGGACCCATACG--GT    331
                     .|.|.|.|||| .||.|||||.| ||.|.|||.|.||       ||  ||
BPUM_1834___y    126 TGCTCTTGGCAGAGGTAAAAAAG-TGTTGAAAGTCGG-------CGTCGT    167

BSNT_05600       332 TCAGA----ACG-ATTTATTTTATCGATTCTTTTTGCCGGTATGGGGAGT    376
                     |.|.|    ||| ||.||||||.|.|||.|.|||||||..||||..||..
BPUM_1834___y    168 TGAAATTAGACGAATCTATTTTTTAGATGCATTTTGCCACTATGAAGAAA    217

BSNT_05600       377 TGAAAATTGACAATCGAT--TCTCACATGCACTCGTGTATGC--AGGGGG    422
                     |||.||...||||.||||  ||||||||    ||.|||.|.|  |||.||
BPUM_1834___y    218 TGAGAAAAAACAACCGATTGTCTCACAT----TCTTGTCTACCTAGGCGG    263

BSNT_05600       423 CTGCTTGTTTAACCTCATCACGATTTTTGCAA-----TCAATCTGCTGAT    467
                                     ||||    ||.|||||     |||.|.|.||.||
BPUM_1834___y    264 ----------------ATCA----TTATGCAACTTGCTCAGTGTTCTCAT    293

BSNT_05600       468 --TATACACAGTGTATTAAAGCCGAATG------TG------------TT    497
                       |..|||||    ||.|..||| ||||      ||            ||
BPUM_1834___y    294 ACTGAACACA----ATGATCGCC-AATGATTTCCTGCCAGAGCACCAATT    338

BSNT_05600       498 TTTTTATCAGTTTGTCTATTT----TTCTACGTATTATGTGTTTTTTGCC    543
                     |||.|||||.||||..||.||    .|||||    |||||.||||||||.
BPUM_1834___y    339 TTTCTATCAATTTGCTTACTTCTCAGTCTAC----TATGTATTTTTTGCA    384

BSNT_05600       544 CTGCTGCCGGTCCGATATTCGGAGAAAAAGTCATCA-------GACGGGC    586
                     ||.|||||.||||..|||.|.||       ||||||       ||.||||
BPUM_1834___y    385 CTTCTGCCAGTCCAGTATGCAGA-------TCATCATCCGAGTGATGGGC    427

BSNT_05600       587 TGGCGATAT----ACAAGGTGCTCCGTTACGGAGAGCGCTACGAAATCGA    632
                     ..||||| |    |||   |..|.||..||||.||.|..|..||.|||..
BPUM_1834___y    428 AAGCGAT-TGTGAACA---TTATTCGGCACGGTGAACCATGTGACATCAT    473

BSNT_05600       633 TAAATAA    639
                     |.|.|||
BPUM_1834___y    474 TGACTAA    480


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