Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05600 and BPUM_1834
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:12
# Commandline: needle
# -asequence dna-align/BSNT_05600.1.24716.seq
# -bsequence dna-align/BPUM_1834___ywmF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05600-BPUM_1834___ywmF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05600-BPUM_1834___ywmF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05600
# 2: BPUM_1834___ywmF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 707
# Identity: 305/707 (43.1%)
# Similarity: 305/707 (43.1%)
# Gaps: 295/707 (41.7%)
# Score: 725.0
#
#
#=======================================
BSNT_05600 1 ATGAGACAAAACCATCTGCTGGCAGATGGTTTTTTTATATGCAAAAAAAG 50
BPUM_1834___y 0 -------------------------------------------------- 0
BSNT_05600 51 GGGAGCATCGGAACGTTTATTTCCGGGGAGAACAGGAAAAATCGCTACAG 100
BPUM_1834___y 0 -------------------------------------------------- 0
BSNT_05600 101 CACTGTTTTTTGAACAAAAGCCGTTTTGGGATGCAGATCTGCACGTGAGG 150
BPUM_1834___y 0 -------------------------------------------------- 0
BSNT_05600 151 GGGAATTCAATGTTT-GGTTTTAATGATATGGTGAAGTTTCTG-TGGTCT 198
.||||| .|||.|.| ||||||..||.|||| || |||||.
BPUM_1834___y 1 ---------TTGTTTACGTTATCA-GATATGTGGACGTTT-TGCTGGTCG 39
BSNT_05600 199 TTCCTCATTGTTCTGCCGCTTGTACAGATTATACATGTTTCAGGGCACAG 248
||..|..||.||||.||..||||....||..|.||| ||.
BPUM_1834___y 40 TTTTTTGTTATTCTTCCTATTGTTGCCATCCTGCAT-----------CAA 78
BSNT_05600 249 CTTTATGGC----TTTT----------ATTTTTGGCGGAAAAGGATCGTT 284
|| |||| |||| ||.|||||.|.|||.|..||.||
BPUM_1834___y 79 CT---TGGCCATATTTTGGTTGCGTGGATGTTTGGAGCAAAGGTTTCTTT 125
BSNT_05600 285 GGATATAGGCA-TGGGAAAAACGCTGCTTAAAATTGGACCCATACG--GT 331
.|.|.|.|||| .||.|||||.| ||.|.|||.|.|| || ||
BPUM_1834___y 126 TGCTCTTGGCAGAGGTAAAAAAG-TGTTGAAAGTCGG-------CGTCGT 167
BSNT_05600 332 TCAGA----ACG-ATTTATTTTATCGATTCTTTTTGCCGGTATGGGGAGT 376
|.|.| ||| ||.||||||.|.|||.|.|||||||..||||..||..
BPUM_1834___y 168 TGAAATTAGACGAATCTATTTTTTAGATGCATTTTGCCACTATGAAGAAA 217
BSNT_05600 377 TGAAAATTGACAATCGAT--TCTCACATGCACTCGTGTATGC--AGGGGG 422
|||.||...||||.|||| |||||||| ||.|||.|.| |||.||
BPUM_1834___y 218 TGAGAAAAAACAACCGATTGTCTCACAT----TCTTGTCTACCTAGGCGG 263
BSNT_05600 423 CTGCTTGTTTAACCTCATCACGATTTTTGCAA-----TCAATCTGCTGAT 467
|||| ||.||||| |||.|.|.||.||
BPUM_1834___y 264 ----------------ATCA----TTATGCAACTTGCTCAGTGTTCTCAT 293
BSNT_05600 468 --TATACACAGTGTATTAAAGCCGAATG------TG------------TT 497
|..||||| ||.|..||| |||| || ||
BPUM_1834___y 294 ACTGAACACA----ATGATCGCC-AATGATTTCCTGCCAGAGCACCAATT 338
BSNT_05600 498 TTTTTATCAGTTTGTCTATTT----TTCTACGTATTATGTGTTTTTTGCC 543
|||.|||||.||||..||.|| .||||| |||||.||||||||.
BPUM_1834___y 339 TTTCTATCAATTTGCTTACTTCTCAGTCTAC----TATGTATTTTTTGCA 384
BSNT_05600 544 CTGCTGCCGGTCCGATATTCGGAGAAAAAGTCATCA-------GACGGGC 586
||.|||||.||||..|||.|.|| |||||| ||.||||
BPUM_1834___y 385 CTTCTGCCAGTCCAGTATGCAGA-------TCATCATCCGAGTGATGGGC 427
BSNT_05600 587 TGGCGATAT----ACAAGGTGCTCCGTTACGGAGAGCGCTACGAAATCGA 632
..||||| | ||| |..|.||..||||.||.|..|..||.|||..
BPUM_1834___y 428 AAGCGAT-TGTGAACA---TTATTCGGCACGGTGAACCATGTGACATCAT 473
BSNT_05600 633 TAAATAA 639
|.|.|||
BPUM_1834___y 474 TGACTAA 480
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