Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02902 and BPUM_1831
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:28
# Commandline: needle
# -asequence dna-align/BSNT_02902___xynB.1.24716.seq
# -bsequence dna-align/BPUM_1831___xynB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02902___xynB-BPUM_1831___xynB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02902___xynB-BPUM_1831___xynB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02902___xynB
# 2: BPUM_1831___xynB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1628
# Identity: 1189/1628 (73.0%)
# Similarity: 1189/1628 (73.0%)
# Gaps: 49/1628 ( 3.0%)
# Score: 4123.0
#
#
#=======================================
BSNT_02902___ 1 ATGAAGATTACCAATCCCGTACTTAAAGGATTCAATCCCGATCCAAGTAT 50
|||||.|||||||||||.||.||.|.||||||.|||||.|||||||||||
BPUM_1831___x 1 ATGAAAATTACCAATCCAGTGCTGAGAGGATTTAATCCGGATCCAAGTAT 50
BSNT_02902___ 51 TTGTAGGGCAGGAGAGGATTATTATATCGCTGTATCTACATTTGAGTGGT 100
|||..|.|.||||||.||||||||.||.||.||.|||||||||||.||||
BPUM_1831___x 51 TTGCCGTGTAGGAGAAGATTATTACATGGCGGTCTCTACATTTGAATGGT 100
BSNT_02902___ 101 TTCCGGGAGTCCAGATACACCACTCAAAAGATTTAGTAAATTGGC-ACTT 149
||||.||.||.||.||..|.||.||.||.|||.|.||..|||||| .|||
BPUM_1831___x 101 TTCCAGGGGTGCAAATTTATCATTCGAAGGATCTCGTCCATTGGCGGCTT 150
BSNT_02902___ 150 AGTTGCACATCCATTACAGAGAGTTTCACAATTAGACATGAAAGGAAATC 199
|.|||.|.|||.||.||.|.|...||.||..|.|||||||||||.||||
BPUM_1831___x 151 -GCTGCGCGTCCTTTGCAAAAAACGTCGCAGCTGGACATGAAAGGGAATC 199
BSNT_02902___ 200 CAAATTCAGGTGGGGTTTGGGCACCATGTTTAAGCTATAGTGATGGGAAG 249
|..||||.||.||.||.||||||||.||..|.||||||...|||||..|.
BPUM_1831___x 200 CTGATTCTGGCGGAGTATGGGCACCGTGCCTGAGCTATGCAGATGGTCAT 249
BSNT_02902___ 250 TTTTGGCTTATCTATACGGATGTTAAGGTAGTAGATGGCGCATGGAAAGA 299
||||||||.||.|||.|.|||.||||.|||||.|||||..|||..|||||
BPUM_1831___x 250 TTTTGGCTCATTTATTCAGATATTAAAGTAGTGGATGGTCCATTTAAAGA 299
BSNT_02902___ 300 TTGTCACAATTATTTAGTTACTTGTG-AAACGA--TTAATGGTGATTGGA 346
|.||||.||||||||.||.|| .| |||.|| ||.|.||||||||||
BPUM_1831___x 300 TGGTCATAATTATTTGGTGAC---AGCAAATGAAGTTGACGGTGATTGGA 346
BSNT_02902___ 347 GTGAGCCGATTACATTAAATAGCTCGGGATTTGATGCTTCTTTGTTCCAT 396
||||||||.|.|...|.||||||||.||.||||||.|.|||||.||.|||
BPUM_1831___x 347 GTGAGCCGGTGAAGCTTAATAGCTCTGGCTTTGATCCCTCTTTATTTCAT 396
BSNT_02902___ 397 GA--TAAGGATGGAAAAAAGTATTTATTAAATATGTTATGGGATCACCGT 444
|| .||| .||.||.||.||..|.|||||||||.|.|||| |||.|
BPUM_1831___x 397 GACCAAAG--CGGCAAGAAATACGTCTTAAATATGCTGTGGG---ACCAT 441
BSNT_02902___ 445 ATTG---ATCGGCACTCATTTGGAGGAATTGTTATACAGGAATATTCTGA 491
|..| |.|..||.||.||||..||.||||...|.|||||||||...|.
BPUM_1831___x 442 AGGGAAAAACACCATTCCTTTGCGGGTATTGCCCTGCAGGAATATAGCGT 491
BSNT_02902___ 492 TAAAGAGCAAAAATTAATCGGTAAACCAAAAGTTATATTTGAAGG--AAC 539
.|.|||..|.|||.|.||.|||.|.|..||.|||||.|||.|||| .||
BPUM_1831___x 492 GACAGAAAAGAAACTCATTGGTGAGCGGAAGGTTATTTTTAAAGGCACAC 541
BSNT_02902___ 540 GGATAGAAAACTGACAGAAGCTCCGCATCTTTATCATATCGGGAACTATT 589
.||| .|||.||||||||||.||||||||||||||.||.||..|.||.|
BPUM_1831___x 542 CGAT--TAAATTGACAGAAGCACCGCATCTTTATCACATTGGCGATTACT 589
BSNT_02902___ 590 ATTATTTATTAACTGCAGAAGGAGGAACACGGTACGAACATGCTGCTACA 639
|||||||||||||.|||||||||||.||.||.|||||.|||||.||.|||
BPUM_1831___x 590 ATTATTTATTAACAGCAGAAGGAGGCACCCGCTACGAGCATGCGGCAACA 639
BSNT_02902___ 640 ATTGCCCGTTCTGCAAATATTGAGGGGCCATATGAAGTTCATCCCGATAA 689
|||||||||||..|..|.|||||.|||||.|||||.||||||||.|||||
BPUM_1831___x 640 ATTGCCCGTTCCCCGCAGATTGAAGGGCCTTATGAGGTTCATCCTGATAA 689
BSNT_02902___ 690 TCCAATCTTAACGTCATGGCATGAC-----CCAGGAAATCCATTGCAAAA 734
.|||||.|||| || ||.|..| ||.|.|.||||..|.|||||
BPUM_1831___x 690 CCCAATTTTAA-GT----GCTTTTCACACACCTGAACATCCGCTTCAAAA 734
BSNT_02902___ 735 ATGTGGTCATGCATCCATTGTTCAAACACATACAGATGAGTGGTATTTAG 784
|||.||.|||||.||||||||||||||.||.|||.||||.||||||.|.|
BPUM_1831___x 735 ATGCGGGCATGCTTCCATTGTTCAAACGCACACAAATGAATGGTATCTCG 784
BSNT_02902___ 785 CTCATTTAACGGGACGTCCTATTC-ATCCTGACGATGATTCAATTTTTCA 833
|.|||||.||.||.||.||||||| |||..| |.|.||.||.||||||||
BPUM_1831___x 785 CCCATTTGACTGGTCGCCCTATTCAATCAAG-CAAGGAATCTATTTTTCA 833
BSNT_02902___ 834 GCAGAGAGGATACTGTCCTTTGGGCAGAGAAACAGCTATTCAAAAACTTT 883
.||||||||.|..||||||||.||.|||||||||||.||||||||.|||.
BPUM_1831___x 834 ACAGAGAGGGTGGTGTCCTTTAGGAAGAGAAACAGCAATTCAAAAGCTTG 883
BSNT_02902___ 884 ACTGGAAAGATGAATGGCCCTATGTAGTAGGTGGAAAAGAAGGAAGC-TT 932
|.|||||.||||..|||||.|||||.||.||.||||||||||| ||| .|
BPUM_1831___x 884 AATGGAAGGATGGCTGGCCGTATGTTGTGGGCGGAAAAGAAGG-AGCACT 932
BSNT_02902___ 933 GGAGGTAGATGCACCTTCTATACCCGAAACAATATTTGAAGCAACGTACC 982
||||||.||.|||||..|.||...|||||...|.||||...||||.||.|
BPUM_1831___x 933 GGAGGTTGAAGCACCAGCGATCAACGAAAAGGTTTTTGCTCCAACCTATC 982
BSNT_02902___ 983 CGGAAGTTGATGAATTTGAGGATTCAACATTAAATATAAATTTTCAAACT 1032
....|||.|||||||||.|.||.|||||.|||||||.|.|.||.|||||.
BPUM_1831___x 983 ATACAGTCGATGAATTTAAAGAATCAACGTTAAATAGACACTTCCAAACA 1032
BSNT_02902___ 1033 TTAAGGATTCCATTCACGAATGAA---TTAGGTTCATTGACTCAAGCGCC 1079
|||||.|||||.||||| |||| .|.||||||||.||..||...||
BPUM_1831___x 1033 TTAAGAATTCCTTTCAC---TGAACAGATCGGTTCATTAACGGAAAAACC 1079
BSNT_02902___ 1080 AAATCATTTACGATTATTCGGTCATGAATCATTGACCTCGACATTTACTC 1129
..|.||||||.|.||||.||||||.|||||..|.||.||.|..|||||.|
BPUM_1831___x 1080 TCAGCATTTAAGGTTATACGGTCAGGAATCTCTCACATCTAAGTTTACCC 1129
BSNT_02902___ 1130 AGGCATTTGTAGCCAGACGCTGGCAAAGTCTCCATTTTGAAGCCGAAACT 1179
|.||.|||||.||.||.|||||||||||..|..||||||||||.||.||.
BPUM_1831___x 1130 AAGCCTTTGTTGCAAGGCGCTGGCAAAGCTTTTATTTTGAAGCTGAGACA 1179
BSNT_02902___ 1180 GCTGTTGAGTTTTATCCGGAAAATTTTCAACAAGCCGCTGGATTGGTGAA 1229
||.||...|||.|.|||.||.||||||||.|||||.|||||..|.|||||
BPUM_1831___x 1180 GCAGTATCGTTCTTTCCAGAGAATTTTCAGCAAGCTGCTGGTCTTGTGAA 1229
BSNT_02902___ 1230 TTACTACAATACAGAGAACTGGACGGCTCTTCAAGTCACGCATGATGAAG 1279
|||.||.|||||.||.||.||||||||.|||||.||.||..||||.||.|
BPUM_1831___x 1230 TTATTATAATACGGAAAATTGGACGGCGCTTCAGGTGACATATGACGAGG 1279
BSNT_02902___ 1280 AACTTGGCCGCATTCTTGAATTAACAATATGTGACAACTTTTCTTTTTCA 1329
||.||||||||||||||||||||.|....|||.|.|||.||||.|||||.
BPUM_1831___x 1280 AATTTGGCCGCATTCTTGAATTATCTGCCTGTCAAAACCTTTCCTTTTCT 1329
BSNT_02902___ 1330 CAGCCATT-AAATAATAAAATTGTTATTCCTCGTGAAGTAAAGTATGTAT 1378
|||||||| |.|.|| |||||.||.|||||....|||||.|..|||||.|
BPUM_1831___x 1330 CAGCCATTGACACAA-AAAATCGTCATTCCAGAGGAAGTCACCTATGTGT 1378
BSNT_02902___ 1379 ATTTAAGAGTAAATATTGAAAAAGACAAATATTATTATTTTTATTCTTTT 1428
||||||.|||.|...||.|.|||||.|.||||...||||.||||||||||
BPUM_1831___x 1379 ATTTAAAAGTGATCGTTCAGAAAGAAACATATACCTATTCTTATTCTTTT 1428
BSNT_02902___ 1429 -AACAAAGAAGATTGGCACAAAATTGACATAGCACTGGAATCGAAAAAAT 1477
|.|||| ||||.|||.|..|.|||||..|...|.|.|||||.|...|..
BPUM_1831___x 1429 GATCAAA-AAGACTGGAAGGACATTGATGTGATATTTGAATCTAGCCATC 1477
BSNT_02902___ 1478 TATCAGATGATTACATCCGTGGGGGAGGATTCTTCACAGGGGCCTTTGTA 1527
||||.|||||.|..||.||.||.||||||||.||.||||||||.|||||.
BPUM_1831___x 1478 TATCTGATGACTTTATTCGAGGAGGAGGATTTTTTACAGGGGCATTTGTC 1527
BSNT_02902___ 1528 GGGATGCAATGCCAAGATACCAGTGGTAATCATATTCCGGCCGACTTTAG 1577
||.|||||.|||||||||||.|||||..|.|.|.|.||.||.||.||||.
BPUM_1831___x 1528 GGCATGCAGTGCCAAGATACAAGTGGCGAGCGTCTGCCTGCTGATTTTAA 1577
BSNT_02902___ 1578 ATATTTTCGTTATAAAGAAA---AATAA 1602
.|||||.||||||.|.|||| |||||
BPUM_1831___x 1578 CTATTTCCGTTATGAGGAAACAGAATAA 1605
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