Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02904 and BPUM_1829
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:28
# Commandline: needle
# -asequence dna-align/BSNT_02904___xylA.1.24716.seq
# -bsequence dna-align/BPUM_1829___xylA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02904___xylA-BPUM_1829___xylA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02904___xylA-BPUM_1829___xylA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02904___xylA
# 2: BPUM_1829___xylA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1357
# Identity: 1012/1357 (74.6%)
# Similarity: 1012/1357 (74.6%)
# Gaps: 38/1357 ( 2.8%)
# Score: 3642.0
#
#
#=======================================
BSNT_02904___ 1 ATGGCTCAATCTCATTCCAGT-TCAA----TTA-ACTATTTT----GGAA 40
|||||| |.|||| |.| |.|| ||| || |..|| ||||
BPUM_1829___x 1 ATGGCT--AACTCA----AATATGAAAACGTTACAC-AGCTTAGAAGGAA 43
BSNT_02904___ 41 GCGCAA----ACAAAGTGGTTTACGAAGGGAAAGATTCGACTAATCCTTT 86
.||.|| |||| ||| |||||.|||.|.||.|..|||||..|
BPUM_1829___x 44 TCGGAAAAATACAA-----TTT--GAAGGAAAACAATCAAAAAATCCACT 86
BSNT_02904___ 87 AGCATTTAAATATTATAATCCTCAA--GAAGTAATCGGCGGAAAAACGAT 134
.||.|||||||..||||||| ||| ||||||||.|||||||||||.||
BPUM_1829___x 87 CGCTTTTAAATCCTATAATC--CAAGTGAAGTAATTGGCGGAAAAACAAT 134
BSNT_02904___ 135 GAAAGAGCATTTGCGATTTTCTATTGCCTATTGGCATACATTTACTGCTG 184
||||||.||..||||.||.||..|.||.||||||||||||||.|||||||
BPUM_1829___x 135 GAAAGATCACCTGCGCTTCTCAGTCGCTTATTGGCATACATTGACTGCTG 184
BSNT_02904___ 185 ATGGTACGGACGTTTTTGGATCAGCTACGATGCAAAGACCATGGGA-TCA 233
||||.||.|||.|.||||||.|.|..||||||||.|||.||||||| ||
BPUM_1829___x 185 ATGGAACAGACATGTTTGGAACTGGCACGATGCAGAGAGCATGGGACTC- 233
BSNT_02904___ 234 CTATAAAGGCATGGATCTAGC-GAAGATGAGAGTAGAAGCAGCATTTGAG 282
|||.|..||.||||||.|||| .|||.| |||.|.||||..||.|||.|.
BPUM_1829___x 234 CTACAGCGGGATGGATTTAGCAAAAGCT-AGATTGGAAGTTGCCTTTCAA 282
BSNT_02904___ 283 ATGTTTGAAATACTAGATGCACCATTCTTTGCTTTTCATGACCGGGATAT 332
.|||||||..||.||||||..||.|..|||.|.||.||||||||.||.||
BPUM_1829___x 283 CTGTTTGATCTATTAGATGTCCCGTATTTTTCCTTCCATGACCGTGACAT 332
BSNT_02904___ 333 TGCACCAGAAGGCAG-TACGCTAAAAGAGACAAACCAAAATTTAGATATG 381
|||||| |.|||.|| ||||||..|||||||.||.|||.|||||||.||.
BPUM_1829___x 333 TGCACC-GGAGGGAGATACGCTTCAAGAGACGAATCAACATTTAGACATC 381
BSNT_02904___ 382 ATCGTGGGCATGATTAAAGATTACATGAGAAATAGCGGCGTTAAGCTATT 431
||..|.|..|..||.|||||.||||||.|..|||||||.||.||||||.|
BPUM_1829___x 382 ATTTTAGAAAGAATGAAAGAATACATGCGGGATAGCGGAGTCAAGCTACT 431
BSNT_02904___ 432 ATGGAATACCGCAAACATGTTTACGAATCCCCGTTTCGTCCATGGTGCCG 481
.|||||.||.||.||||||||.|.|.||||..|.||.||.||.||.||.|
BPUM_1829___x 432 GTGGAACACGGCCAACATGTTCAAGCATCCTAGATTTGTTCACGGCGCAG 481
BSNT_02904___ 482 CGACTTCTTGCAATGCAGATGTGTTTGCGTATGCTGCAGCACAAGTGAAA 531
||||.|||||..||||||||||.|||||.|||||.||.|||||.||||||
BPUM_1829___x 482 CGACATCTTGTCATGCAGATGTCTTTGCCTATGCAGCCGCACAGGTGAAA 531
BSNT_02904___ 532 AAAGGGTTAGAAACAGCAAAAGAGCTTGGCGCTGAGAACTATGTATTTTG 581
|||||..|.||||||||.|||||.|||.||||.||.||.||.||.||.||
BPUM_1829___x 532 AAAGGCATCGAAACAGCTAAAGAACTTCGCGCAGAAAATTACGTTTTCTG 581
BSNT_02904___ 582 GGGCGGCCGTGAAGGATATGAAACATTGTTAAATACCGATTTAAAATTTG 631
|||.||.||.||.|||||.||.||..||.|.|||||.|||.|.|||...|
BPUM_1829___x 582 GGGAGGACGAGAGGGATACGATACTCTGCTGAATACTGATATGAAAAGAG 631
BSNT_02904___ 632 AGCTTGATAATTTGGCTAGATTTATGCATATGGCAGTGGATTATGCGAAG 681
||||.||..|..||||...|||..||||||||||.||.||||||||.|||
BPUM_1829___x 632 AGCTAGACCACATGGCGTCATTCTTGCATATGGCTGTTGATTATGCAAAG 681
BSNT_02904___ 682 GAAATCGGGTACACAGGGCAGTTTTTGATTGAGCCAAAACCAAAAGAGCC 731
|||||.||.|||||.||.||.|||||.||||||||.||.||.||.|||||
BPUM_1829___x 682 GAAATTGGATACACTGGCCAATTTTTAATTGAGCCTAAGCCGAAGGAGCC 731
BSNT_02904___ 732 GACCACCCATCAATACGATACAGATGCAGCAACAACCATTGCCTTTTTGA 781
|||.||.||||||||||||.||||||||||.|||.|.||.||||||||.|
BPUM_1829___x 732 GACTACTCATCAATACGATGCAGATGCAGCGACATCTATCGCCTTTTTAA 781
BSNT_02904___ 782 AGCAATATGGCTTAGACAATCATTTTAAATTAAATCTTGAAGCCAATCAT 831
|||||||.||.|||||.|..|||||||||||.||..||||.||.||||||
BPUM_1829___x 782 AGCAATACGGATTAGATACACATTTTAAATTGAACATTGAGGCGAATCAT 831
BSNT_02904___ 832 GCCACATTAGCCGGGCATACATTCGAACATGAATTACGCATGGCAAGAGT 881
||.||..|.||.||.|||||.||.||.|||||||||||..|.||.|||.|
BPUM_1829___x 832 GCGACGCTTGCTGGCCATACGTTTGAGCATGAATTACGTGTCGCGAGAAT 881
BSNT_02904___ 882 ACATGGTCTGCTTGGCTCTGTTGACGCAAACCAGGGTCATCCTCTTTTAG 931
||||||..||||.||.|||||.||.||.|||||.||..||.|.||..|.|
BPUM_1829___x 882 ACATGGATTGCTCGGTTCTGTGGATGCGAACCAAGGGAATACGCTACTTG 931
BSNT_02904___ 932 GCTGGGACACGGATGAATTTCCGACGGATTTATATTCTACGACATTAGCA 981
|.||||||||.|||||||||||.||.|||||||||.|.||.||..|.||.
BPUM_1829___x 932 GATGGGACACTGATGAATTTCCAACCGATTTATATGCCACAACGCTTGCC 981
BSNT_02904___ 982 ATGTACGAAATCCTGCAAAATGGCGGCCTAGGAAGCGGCGGATTAAACTT 1031
|||||.|||||.||||||||||||||.|||||.|..||.||..|.|||||
BPUM_1829___x 982 ATGTATGAAATTCTGCAAAATGGCGGACTAGGTACTGGTGGTCTCAACTT 1031
BSNT_02904___ 1032 TGATGCGAAGGTCAGAAGATCTTCTTTTGAGCCTGATGATCTAATATATG 1081
||||||.||.||.||||||.||||||||||||.|||.|||.|..|.||||
BPUM_1829___x 1032 TGATGCAAAAGTTAGAAGAGCTTCTTTTGAGCTTGAAGATATTTTGTATG 1081
BSNT_02904___ 1082 CCCATATTGCAGGGATGGATGCATTTGCAAGAGGATTGAAAGTTGCCCAC 1131
||||||||||.||||||||||||||.||||.||||||||..||.||.||.
BPUM_1829___x 1082 CCCATATTGCGGGGATGGATGCATTCGCAAAAGGATTGAGGGTCGCTCAT 1131
BSNT_02904___ 1132 AAATTAATCGAAGATCGTGTGTTTGAAGATGTGATTCAACATCGTTACCG 1181
|.|.|.||.|||||||||||||||||||||||.|||.|.||.||.||.||
BPUM_1829___x 1132 AGACTCATAGAAGATCGTGTGTTTGAAGATGTCATTAAGCACCGGTATCG 1181
BSNT_02904___ 1182 CAGCTTTACTGAAGGGATTGGTCTTGAAATTATAGAAGGAAGAGCTAATT 1231
|||.|||.|||||||||||||.|.|||.|||..||||||||..||.||.|
BPUM_1829___x 1182 CAGTTTTTCTGAAGGGATTGGCCGTGATATTTCAGAAGGAAAGGCAAACT 1231
BSNT_02904___ 1232 TTCACACACTTGAGCAATATGCGCTAAATCATAAATTAATTAAAAACGAA 1281
||||.|.|.|.||..|.|||||..|.||.|||...|||||.|.|||||||
BPUM_1829___x 1232 TTCATATATTAGAAGAGTATGCATTGAAACATCCTTTAATCAGAAACGAA 1281
BSNT_02904___ 1282 TCTGGAAGACAGGAGAAATTAAAAGCGATATTGAACCAATACATTTTAGA 1331
||.||||||.||||..|.||.|||||....||.||.||||||.|.|||||
BPUM_1829___x 1282 TCGGGAAGAGAGGAACAGTTGAAAGCCCGGTTAAATCAATACTTGTTAGA 1331
BSNT_02904___ 1332 AGTATAA 1338
||..|.|
BPUM_1829___x 1332 AGATTGA 1338
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