Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02906 and BPUM_1828
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:28
# Commandline: needle
# -asequence dna-align/BSNT_02906___xylB.1.24716.seq
# -bsequence dna-align/BPUM_1828___xylB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02906___xylB-BPUM_1828___xylB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02906___xylB-BPUM_1828___xylB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02906___xylB
# 2: BPUM_1828___xylB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1585
# Identity: 1045/1585 (65.9%)
# Similarity: 1045/1585 (65.9%)
# Gaps: 170/1585 (10.7%)
# Score: 3156.5
#
#
#=======================================
BSNT_02906___ 1 ATGAAGTATGTCATTGGAATAGATCTTGGAACGAGTGCTGTTAAAACCAT 50
|||||||||||.||.|||||.||.|||||||||||.|..||.|||.||||
BPUM_1828___x 1 ATGAAGTATGTGATGGGAATTGACCTTGGAACGAGCGGAGTCAAAGCCAT 50
BSNT_02906___ 51 TTTAGTTAACCAAAACGGCAAGGTTTGTGCAGAAACGTCCAAAAGG---T 97
.|||||..|..|..||||.|||||.||.|..|| |.|||..|.| |
BPUM_1828___x 51 ATTAGTCGATGAGGACGGAAAGGTATGCGGCGA---GGCCACTAAGCCTT 97
BSNT_02906___ 98 ATCCG-CTTATCCAAGAGAAGGCGGGATATAGTGAGCAAAATCCTGAAGA 146
| ||| ||.||.|||||.||..|.||||||.|||||||.||.||.||.||
BPUM_1828___x 98 A-CCGCCTCATTCAAGATAAACCTGGATATTGTGAGCAGAACCCAGAGGA 146
BSNT_02906___ 147 CTGGGTGCAGCAAACA---------ATTGAAGCATTGGCTGAATTGGTTT 187
.|||||..|||||||| ||..|||.| |||| |||
BPUM_1828___x 147 ATGGGTTGAGCAAACAGTGGCTGCGATGAAAGAA----CTGA--TGG--- 187
BSNT_02906___ 188 CTATATCCAATG-----------TTCAAGCCAAGGATATTGACGGGATAA 226
|||.| |||||...||| |.|..||.||.|
BPUM_1828___x 188 -------CAAGGCAGCCTGTCCTTTCAAAAAAAG----TAGGGGGCATCA 226
BSNT_02906___ 227 GCTATTCGGGACAAATGCATGGATTAGTACTGCTTGATAAA-GATT---G 272
|||.|||.|||||.||||||||..|.||.|| || |||| ||.| |
BPUM_1828___x 227 GCTTTTCTGGACAGATGCATGGGCTGGTTCT--TT--TAAATGAATCCCG 272
BSNT_02906___ 273 TCAGGTGTTACGTAATGCAATTCTTTGGAATGATACCAGAACAACGCCTC 322
..|||||.|.||...|||.|||.|.|||||||||||..||||.||..|.|
BPUM_1828___x 273 CGAGGTGCTCCGCCCTGCGATTTTATGGAATGATACACGAACGACAGCGC 322
BSNT_02906___ 323 AATGTATAAGGATGACCGAGAAATTTGGCGATCATCTTCTTGACATCACA 372
||||||||...||.||..|.||..|.||.||.|..||.|...|.||.||.
BPUM_1828___x 323 AATGTATACACATCACAAACAAGCTGGGGGAACGGCTCCACCAAATAACG 372
BSNT_02906___ 373 AAAAACCGTGTTTTAGAAGGGTTTACATTACCTAAAATGTTATGGGTGAA 422
|||||.|..|...|||||||.||.|||.||||.|||.|.||||||||.||
BPUM_1828___x 373 AAAAATCAAGCGCTAGAAGGATTCACACTACCAAAATTATTATGGGTAAA 422
BSNT_02906___ 423 GGAACATGAACCTGAACTTTTTAAAAAAACTGCT----GTGTTTTTGCTT 468
||||||||||||.|||.||..|.||.||| | .|||||||.|||
BPUM_1828___x 423 GGAACATGAACCAGAAATTGATCAACAAA----TCAACATGTTTTTACTT 468
BSNT_02906___ 469 CCGAAAGACTATGTGAGATTCCGTATGACCGGTGCCATTCACACGGAATA 518
||||||||.|||||.|||||.|||.|.||.|||.|..|.||.|..||.||
BPUM_1828___x 469 CCGAAAGATTATGTCAGATTTCGTTTAACAGGTTCTGTCCATATCGATTA 518
BSNT_02906___ 519 CTCCGATGCAGCAGGAACTTTACTTTTACATATT----ACTC--GCAAGG 562
.||.|||||.||.||.||.||.||.|||.||||| | || |||.||
BPUM_1828___x 519 TTCTGATGCGGCTGGCACCTTGCTGTTAAATATTGGGGA-TCGAGCATGG 567
BSNT_02906___ 563 AGTGGAGCAATGATATTTGCAATCA---AATTGGTATTTCTGCAGATATT 609
|||| |.||.||||| ||| |.|||.||||.||....|||||
BPUM_1828___x 568 AGTG-----AAGAGATTTG---TCAGGTATTTGATATTCCTTTTCATATT 609
BSNT_02906___ 610 TGTCCTCCGCTTGTTGAATCTC--------ATGATTGTGTAGGGTCG--- 648
||.||.||||||| |||| |||| |||||
BPUM_1828___x 610 TGCCCGCCGCTTG-----TCTCGTCAGAGGATGA--------GGTCGGAA 646
BSNT_02906___ 649 --CTGCTTCCGCACGTTGC-CGCCAAGACCGGACTATTAGAAAA---AAC 692
||..|.||||||.|||| ||..|||...||| |.|||.| ..|
BPUM_1828___x 647 CCCTATTGCCGCACATTGCACGTGAAGCTGGGA----TTGAAGAGGGGGC 692
BSNT_02906___ 693 AAAAGTGTACGCTGGGGGAGCAGATAATGCTTGCGGCGCTATTGGAGCAG 742
.|||||.|..|||||.||.|||||.|||||||||||.||.||||||||.|
BPUM_1828___x 693 CAAAGTCTTTGCTGGCGGGGCAGACAATGCTTGCGGAGCAATTGGAGCTG 742
BSNT_02906___ 743 GTATCCTTTCTTCCGGAAAAACTTTATGCAGTATTGGGACCTCAGGGGTC 792
|.||..|.|||||.||....||.||||||||.|||||.||.||.||.|||
BPUM_1828___x 743 GCATTTTATCTTCTGGCCGCACGTTATGCAGCATTGGCACATCTGGCGTC 792
BSNT_02906___ 793 ATACTTTCCTACGAAGAAGAAAAAGAAAGAGACTTTAAAGGCAAAGTCCA 842
||.|||||.||||||||.||..|.|||||||...|..||||.||..|.||
BPUM_1828___x 793 ATTCTTTCTTACGAAGAGGATCATGAAAGAGCGCTGCAAGGAAACTTGCA 842
BSNT_02906___ 843 CTTTTTTAATCATGGAAAAAAGGATTCTTTTTATACGATGGGCGTCACGC 892
.||.|||.||||||.||||||.|||.||||.|||||.|||||.||.||||
BPUM_1828___x 843 TTTGTTTCATCATGCAAAAAAAGATGCTTTATATACAATGGGTGTGACGC 892
BSNT_02906___ 893 TCGCTGCAGGATACAGCTTGGACTGGTTTAAAAGAACGTTT----GCACC 938
|..|.||||||||.|||.||.|||||.| |||| |.||| .|.||
BPUM_1828___x 893 TTTCAGCAGGATATAGCCTGAACTGGGT--AAAG--CATTTACTATCCCC 938
BSNT_02906___ 939 AAACGAATCGTTTGAGCAAT---TATTGCAGGGGGTGGAAGCTATTCCGA 985
|.|.|||||||| .|||| ||.|..|.||.|.||..|.|.||.||.
BPUM_1828___x 939 AGAGGAATCGTT---CCAATCACTACTAGAAGGTGCGGTTGATGTTGCGC 985
BSNT_02906___ 986 TAGGAGCCAATGGACTGCTATACACTCCTTATTTGGTTGGTGAAAGAACG 1035
..|||||.||||||.||||.|.|||.||.|||||.||.||.||||||||.
BPUM_1828___x 986 CTGGAGCGAATGGATTGCTCTTCACACCCTATTTAGTAGGAGAAAGAACA 1035
BSNT_02906___ 1036 CCGCATGCTGATTCT-TCTATTCGGGGAAGCTTGATCGGAATGGA-TGGA 1083
||.|||||.|||||| || |||||.|||||.|||||.||..|.|| .|.|
BPUM_1828___x 1036 CCTCATGCGGATTCTATC-ATTCGTGGAAGTTTGATTGGGTTAGACAGCA 1084
BSNT_02906___ 1084 GCCCACAATAGAAA--GCACTTTT--TGAGGGCAATAATGGAAGGTATCA 1129
|.| || |||| ||||.|.| |.|||||..|..|.|||||.||.|
BPUM_1828___x 1085 GGC----AT-GAAAGGGCACATGTCGTCAGGGCTGTGCTAGAAGGGATTA 1129
BSNT_02906___ 1130 CATTCTCTTTACATGAATCAATTGAGCTATTCCGCGAAGC-GGGAAAATC 1178
|.||.||.|||.|||||||.||.|...||||.||..|||| |||||| |
BPUM_1828___x 1130 CCTTTTCGTTAAATGAATCGATCGCCTTATTTCGGCAAGCAGGGAAA--C 1177
BSNT_02906___ 1179 AGTTCATA----CTGTTGTTTCTATTGGTGGGGGAGCTAAAAATGATACG 1224
| |||| ||.||||.||.|||||.||.||.||.|.||.....||.
BPUM_1828___x 1178 A---CATAGATTCTATTGTCTCCATTGGAGGCGGCGCGAGAAGCCGGACA 1224
BSNT_02906___ 1225 TGGCTGCAAATGCAAGCTGATA-TTTTCAATACGAGGGTAATTAAGTTAG 1273
|||||.|||||||||||.||.| ||||||....|| |||.||..||||||
BPUM_1828___x 1225 TGGCTTCAAATGCAAGCAGACATTTTTCAGGCTGA-GGTCATCCAGTTAG 1273
BSNT_02906___ 1274 AAAATGAACAAGGGCCAGCTATGGGGGCTGCAATGCTGGCTGCCTTTGGA 1323
|.||||||||||||||.|||.|.||.||.||.|||||.||.|||.||||.
BPUM_1828___x 1274 ACAATGAACAAGGGCCTGCTTTAGGTGCAGCGATGCTTGCCGCCGTTGGC 1323
BSNT_02906___ 1324 AGCGGATGGTTTGAATCCCTTGAAGAATGTGCAGAGCAGTTCATTCGTGA 1373
.||||.||||.|..|||.|||||.|.|||||||||.|||||.||||.|.|
BPUM_1828___x 1324 TGCGGCTGGTATCCATCGCTTGAGGCATGTGCAGATCAGTTTATTCATCA 1373
BSNT_02906___ 1374 GGCTGCTGCATTTTATCCAAAGGCGCAAAATGTTCAAAAATATA-----A 1418
.||||.||..|.|.|.|||.||..|.||.||| ||||..|||| |
BPUM_1828___x 1374 AGCTGGTGTCTATGAACCAGAGCAGAAACATG--CAAATCTATATGCTGA 1421
BSNT_02906___ 1419 AACACTATTTGATTTGTATAAGAACATTTATACTCACACAAAGGATCTCA 1468
.||||||.||.|||||.|..|.||||||||.||.||||..|||.||.
BPUM_1828___x 1422 ---TCTATTTCATCTGTATCAACAGATTTATACACAAACAAGAGATATCC 1468
BSNT_02906___ 1469 AT-CAAGCTTTGAAGAGC--TTTCGAAAAAACTAA 1500
|| |..|.|| ||.|| |..|||...|.|||.
BPUM_1828___x 1469 ATGCCGGATT---AGCGCAATACCGATCCATCTAG 1500
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