Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06274 and BPUM_1826
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:42
# Commandline: needle
# -asequence dna-align/BSNT_06274___yyaE.1.24716.seq
# -bsequence dna-align/BPUM_1826___yoaE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06274___yyaE-BPUM_1826___yoaE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06274___yyaE-BPUM_1826___yoaE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06274___yyaE
# 2: BPUM_1826___yoaE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2493
# Identity: 1206/2493 (48.4%)
# Similarity: 1206/2493 (48.4%)
# Gaps: 939/2493 (37.7%)
# Score: 2183.0
#
#
#=======================================
BSNT_06274___ 1 ATG-----------AGCAAAGTGCATCAGTCGGCATGTCCGCTGAA---- 35
||| ||||| ||.| ||.|||.||.| |.||
BPUM_1826___y 1 ATGACCGATTATACAGCAA--TGAA--AGACGGAATAT----TCAAATCA 42
BSNT_06274___ 36 --TTGTTGG------------GA-CAGCTGCGGCTTTTTGGTGAC-TGTT 69
|||||.| || ||| |||||..|||||.| || |...
BPUM_1826___y 43 GTTTGTTCGTTAGATTGCCCAGATCAG-TGCGGTCTTTTGAT-ACATAAA 90
BSNT_06274___ 70 GATGATGGAAAGGTAACAAAAGTGGACGGAGATCCAAACCATCCGATTAC 119
||..||||||||.|...|||||||.|.|||||||||.||||.||..|.||
BPUM_1826___y 91 GAAAATGGAAAGATCGTAAAAGTGCAGGGAGATCCAGACCACCCCGTCAC 140
BSNT_06274___ 120 GGAAGGTAAAATCTGCGGC----CGCGGCAGAAT------GCT------- 152
..||||.||.||.||...| .||| |||| |||
BPUM_1826___y 141 CCAAGGCAACATATGTAACAAAATGCG---GAATGTCACAGCTCGTTTAT 187
BSNT_06274___ 153 -TGA-GACAAAAACAA------ATTC-------GCCTGATCGGCTTCGCT 187
||| | ||||||.| |.|| ||.|| |||| |||
BPUM_1826___y 188 ATGATG--AAAAACGATTGACGACTCCTTTGAAGCGTG-TCGG--TCG-- 230
BSNT_06274___ 188 ATCCAATGAAAAAACAAAATGGCGAGTTTGTGCGGATTTCTTGGG-AGCA 236
||||....||||..|.||||.||.||||.|.|||| ||.|
BPUM_1826___y 231 ----------AAAAGGCGATGGGCAATTTGCGCCGATTACGTGGGAAGAA 270
BSNT_06274___ 237 GGCACTTGATGAAATTGCCGATAAAC--TTCGGGAAATCAAGG---AAAC 281
|.| |||| |||| |||||.||| ||.| |||.
BPUM_1826___y 271 GCC----------ATTG-----AAACCATTCGGCAAA--AATGGACAAAG 303
BSNT_06274___ 282 GTCGGAGACGA--------CTG---CTGTTTTGC---ACAGCCATGAT-- 315
.||...||||| |.| .|.||.||| ||||| |
BPUM_1826___y 304 CTCATTGACGAAAAAGGTCCAGAAAGTATTCTGCCATACAGC-----TTC 348
BSNT_06274___ 316 TATGCGAATAACGG---TCTGTTAAAAGC-----GC-TTGATCAGCGTTT 356
||||.|||||..|| |||| ||.|| || |.||.|..||.||
BPUM_1826___y 349 TATGGGAATATGGGCAATCTG---AATGCTGAAGGCATGGACCGCCGCTT 395
BSNT_06274___ 357 TTTTAATGGATATGG-------CGGCGTGACCGAA--ATC-----GTC-- 390
|||..||.|...||| |.|...|||||.| ||| |||
BPUM_1826___y 396 TTTCTATCGTCTTGGTTCAAGTCAGTTAGACCGGACCATCTGTCAGTCAG 445
BSNT_06274___ 391 --GGAA------GC-----ATATGC--TGGG-----GCTCCGGTATCGAG 420
|||| || ||||.| |||| ||..|||.|..||
BPUM_1826___y 446 CAGGAACGACCGGCTATAAATATACAATGGGTGCAAGCATCGGGACTGA- 494
BSNT_06274___ 421 GCGCA-AAG-CTGGGATTTTGGCCGTTCGTACGGTCACGGACCGCTTGAT 468
|.|| ||| | .||.|||.| |||.|.|..||.||
BPUM_1826___y 495 -CCCAGAAGAC----------ACCATTCAT------ACGAAACTATTCAT 527
BSNT_06274___ 469 ATTTACAACAGCAAGCATGTTGTTGTGTGGGGAAGAAA---TGTATCCAG 515
.||| |||||||..|| |||.||
BPUM_1826___y 528 CTTT-----------------------TGGGGAATCAATGCTGTGTC--- 551
BSNT_06274___ 516 AACAAATATGCACTTATACCACCACTTGCAGCAGGTGAAAAAG-----AA 560
.||.||||||||| .|.|.|||| ||.|| || |||||| ||
BPUM_1826___y 552 GACCAATATGCAC-CAAATCACC-CTCGC-GC-----AAAAAGCCCGAAA 593
BSNT_06274___ 561 G---GGCGCCACAATTACGGTGATTGATCCGATCTTCAATCCGACTGCCA 607
| ||.||.|..|||...|||||| |||.|||| |.|...|||
BPUM_1826___y 594 GCAAGGAGCAAAGATTGTTGTGATT-----GATGTTCA---CAAAAACCA 635
BSNT_06274___ 608 AGCTTGCC-GATCGCTATATCTCTG--TAAAGCCAGGAATGGACGGCTGG 654
|.||.||| |||.|| |.|| || |.|..|| |..|.||| ||||
BPUM_1826___y 636 AACTGGCCGGATGGC-AGAT---TGGTTCATTCC--GCTTCGAC--CTGG 677
BSNT_06274___ 655 -------------CTTGC----GGCA--------GCCGTTTTGAAAGTTC 679
||||| |||| |.|.||||.|||
BPUM_1826___y 678 TACTGACAGTGCCCTTGCACTTGGCATCATGCATGTCCTTTTTAAA---- 723
BSNT_06274___ 680 TGATTGA--GACGG--GAAG----------AACGGAT-GAAACGTTTATT 714
||..|| |||.| |||| ||||.|| .||.||.|.|
BPUM_1826___y 724 -GAAGGACTGACAGATGAAGCCTTTTTAGAAACGTATACAACCGGTCA-- 770
BSNT_06274___ 715 TC-TGAGCACTCTGTCGGTTTTGATGATGTGAAAGAGCTTTTGA-----A 758
|| .||| ||| || |||..|||||||..|| |.||| |
BPUM_1826___y 771 TCAGGAG----CTG-CG----TGAGCATGTGAAGCAG--TATGATCCAGA 809
BSNT_06274___ 759 GACCGTT-------TCTCTGGAAGAGTTTATTGTGAAAACAGAAACTTCT 801
.||.||| ||.||| |.|||| ||.||
BPUM_1826___y 810 CACTGTTGAGGGAATCACTG---GGGTTT----------CAAAA------ 840
BSNT_06274___ 802 ATGGAGGACCTGGAGTATCTGGCCGCTT-------TGTATGCTG------ 838
|||||| |||..|.|.||| |||||||.|
BPUM_1826___y 841 ---GAGGAC-------ATCGTGACACTTGCAAGAATGTATGCAGAGACAT 880
BSNT_06274___ 839 ----ATGGTCCGGTGTCTACTTTTATGGGGCTTGGCA------TGCAGCG 878
|| ||.||||..|..|||||| ||||||.
BPUM_1826___y 881 CACCAT-------------CTCTTATTCGTATTGGCAATGGTTTGCAGCA 917
BSNT_06274___ 879 TTATAAAAACGGCGGG---------GGAACGATTCGTTGGATTGATGCAC 919
..||.|.||.|||||| .||||.|| ||..||| |
BPUM_1826___y 918 CCATGATAATGGCGGGATGAGCATTCGAACCAT--------TTCCTGC-C 958
BSNT_06274___ 920 TCGTTGCGGCAAGCGGAAATGTCGGAAT--------------TAAGGGCG 955
||..||| ||.||.| .|||||||
BPUM_1826___y 959 TCCCTGC--------------TCTGACTGGTCAGTGGCTCCACAAGGGCG 994
BSNT_06274___ 956 GCGGCGCGAATTTCGGAAATGTCCAGA-------TTGGTGAGAGCTTTGC 998
||||.|||| .||||| ||.| || |..|||||.|
BPUM_1826___y 995 GCGGTGCGA-----TGAAAT---CAAACTCTTCTTT--TCTGAGCTAT-- 1032
BSNT_06274___ 999 AA--AAACAAAGCTGAC----GCTGCCGGA---ATTAAA-AACAACATCC 1038
|| |||| |||| | ||.|||.|| |||||| .||.|||..|
BPUM_1826___y 1033 AATGAAAC--AGCT--CTTCAGCGGCCAGATCTATTAAAGGACCACACGC 1078
BSNT_06274___ 1039 C--GTTCTTTTTCAATGATGACACAGGCTGAAGAAGTGT--TGACCGCTG 1084
| |.||.||| ||| ||||..|||..|| |.||||| ||||...||
BPUM_1826___y 1079 CTAGGTCATTT--AAT-ATGAATCAGCTTG--GCAGTGTACTGACGAATG 1123
BSNT_06274___ 1085 CTGATCCTGCGATTGAGATG-ATTATTGTG---ACGTGCGGAA---ATCC 1127
|.|..|||.|.|| ||||| |.|.|| || ||..|...|| |.||
BPUM_1826___y 1124 CAGCGCCTTCCAT--AGATGCACTCTT-TGTCTACTCGTCAAACCCAGCC 1170
BSNT_06274___ 1128 GCTGACTCAGGTGCC-GAATACAAATAAGGTGAGACAAGCATT--TGA-A 1173
|.||.|.| ||| ||| .|||||||.||.|||.|||..|| ||| |
BPUM_1826___y 1171 GTTGTCAC----GCCTGAA-GCAAATAAAGTAAGAGAAGGTTTGCTGAGA 1215
BSNT_06274___ 1174 AAGG------TTCCCATGACGGTCGCGATTGAT--TCCA-TTATGACGGA 1214
.||| || ||.|||| ||.|| ||.| ||.||||.||
BPUM_1826___y 1216 GAGGACTTATTT------ACAGTCG---TTCATGATCTATTTCTGACAGA 1256
BSNT_06274___ 1215 TACCGCAGAGCT--GTGTG-----ATTATGTTTTGCCGACTGCCA---CT 1254
.|| |||| ||.|| || |||..||| |||||| |.
BPUM_1826___y 1257 GAC-----AGCTAAGTATGCAGACAT--TGTCCTGC---CTGCCACATCC 1296
BSNT_06274___ 1255 GTTTTTGAAGAAGAAGATATCTACTATTCCAGTATGTATCAT-------- 1296
|..||||||.|.||.|||.|| |||..|||||
BPUM_1826___y 1297 GCCTTTGAAAATGAGGATTTC-----------TATACATCATACTGGCAC 1335
BSNT_06274___ 1297 CATTATGTTC-AGTACGGGAAGAAGCTTGTG---GAGCCGC-AGGGTG-A 1340
||.|||.||| |.|.| ||| |||..||| || .||| |.||.| |
BPUM_1826___y 1336 CACTATATTCAAATTC---AAG-AGCCAGTGATTGA-ACGCTATGGAGAA 1380
BSNT_06274___ 1341 AGCGAAATC--GGACAGCTGGAT----CTGGTCAGAGCTTGCAAAACGTC 1384
||| ||||| ..||||..|.|| ||.||.||..|.|||.|
BPUM_1826___y 1381 AGC-AAATCCAATACAGAAGTATTTCGCTTGTTAGCTCATGCGA------ 1423
BSNT_06274___ 1385 TTGGG-TTTG---------------GCGAGCTGTTTGAATACAGCACTCA 1418
|||| |||| ||||| ||||
BPUM_1826___y 1424 -TGGGCTTTGAAGATGAAGCCTTCCGCGAG----------ACAG------ 1456
BSNT_06274___ 1419 A----GAATTTTTAGAGATGG-----GGCTTTCCTCAT--TGGAA----G 1453
| |||.|| |||| |.|.|||.|||| .|.|| |
BPUM_1826___y 1457 ATGCGGAACTT------ATGGAACAAGCCCTTCATCATCCAGAAAATCCG 1500
BSNT_06274___ 1454 CA----GAGGATGTGACACTT-----GAGCGTTTAAAAGAAAA------- 1487
|| ||| ||||.|| |||...|||||||||||
BPUM_1826___y 1501 CATTATGAG-----GACATTTCATACGAGGCATTAAAAGAAAAGAAATGG 1545
BSNT_06274___ 1488 --------------AGGCCACCTCCCTCTTCCAG----TAAAACAGGTGC 1519
||| |||| |||||| |||
BPUM_1826___y 1546 ATCAAAGCAAAAAGAGG--ACCT-----TTCCAGGACTTAA--------- 1579
BSNT_06274___ 1520 CGTGGGATGATTATCAGTTTTTGACGCCGAGTGGAAAATTTGA-ATTTAC 1568
||.|.|..||.|||||.||.|||.|||| .||||.
BPUM_1826___y 1580 ---------------AGCTCTCTACTCCGAGCGGTAAAATTGAGCTTTAT 1614
BSNT_06274___ 1569 TTCGTCGCTAGCTGAGC-----AAAAAGGATTTAGCGGCT------CGCT 1607
| ||||.| |||||.|| |||.| ||||
BPUM_1826___y 1615 T----------CTGAACAAATGAAAAAAGA-----CGGGTATCCAGCGCT 1649
BSNT_06274___ 1608 TCAATTAAATGTGCCCGAAGAATCTGTTTTCCATAATGAGGAGTTAGCTG 1657
||.|....|||||||| ||.| ||.|||| .||| |
BPUM_1826___y 1650 TCCAACCTATGTGCCC-------CTCT--------ATCAGGA--AAGC-G 1681
BSNT_06274___ 1658 AAAAGTACCCTTATACGCTGTTATCCATTCAT-CCGCAGCGTTCC-AACC 1705
|| |||.|.|| |.||||.|| ||| |.||| ||.|
BPUM_1826___y 1682 AA---------TATCCACT----TACATTTATACCG----GGTCCGAATC 1714
BSNT_06274___ 1706 A--------TTCAC---AGCATGTGCCGTTTATTGAAAAGCTTC-AGCAC 1743
| ||.|| |.|.|.| |..||..||||||||.|| |..||
BPUM_1826___y 1715 ATAATTTCCTTAACTCGACCTTCT--CTCTTCATGAAAAGCATCAAAAAC 1762
BSNT_06274___ 1744 GTTCAGGTCGATATTTCTCCAGATATAGCTGC---TGA--GCAGAATCTT 1788
||||.|..|.||| || ||||.| ||| |.||
BPUM_1826___y 1763 -------TCGAGAAGTTTCC---TA-AGCTTCATATGAATGAAG------ 1795
BSNT_06274___ 1789 CAGGATG---------GAGACG-----AGGTTGTCATCT----------- 1813
|||||| |||| | ||.|.||.||.|
BPUM_1826___y 1796 -AGGATGCAAAGGCAAGAGA-GATTGAAGATGGTGATATGGTGCGTGTGC 1843
BSNT_06274___ 1814 TTAATGACCGCG--------GACGCTTGAAGGGCAAGGTG----AAA--- 1848
|.||||||||.| || |||||..|.|..||.|| |||
BPUM_1826___y 1844 TGAATGACCGGGGTGAATGCGA-GCTTGTCGTGTCAGTTGGTCAAAATGT 1892
BSNT_06274___ 1849 -------------GTGATGAAGC--AGGCTCATGCGAAGACGATTAATAT 1883
|||.|| ||| |||.|.|||.|.| |||.||
BPUM_1826___y 1893 CTTATCCGGTGTTGTGGTG-AGCCAAGGATTATGGGCA---GATCAA--- 1935
BSNT_06274___ 1884 AGATGAAGGCATGTGGG-----CGGCTTTTGGAGGGTCAGTCAATGCACT 1928
.|||||| |.||| ||||||||.|||
BPUM_1826___y 1936 ----AAAGGCA------AAAAACAGCT-----------AGTCAATGGACT 1964
BSNT_06274___ 1929 GACAAATGATACAAATTCTGATAATGGA-ATGGGAAG------TACG--C 1969
.|||..||| ||.|.||...|| |||||..| .||| |
BPUM_1826___y 1965 AACACCTGA-------TCGGCTAGCAGATATGGGCGGCGGTGCGACGTTC 2007
BSNT_06274___ 1970 TTTTTGACTGTTTAGTAGGCTTGAA----AAAAG----CATAA 2004
|||| ||| |.||..||||| ||||| ||||.
BPUM_1826___y 2008 TTTT---CTG----GCAGAGTTGAAGTTGAAAAGTTATCATAG 2043
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