Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05139 and BPUM_1803
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:48
# Commandline: needle
# -asequence dna-align/BSNT_05139___yvbT.1.24716.seq
# -bsequence dna-align/BPUM_1803___yvbT.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05139___yvbT-BPUM_1803___yvbT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05139___yvbT-BPUM_1803___yvbT.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05139___yvbT
# 2: BPUM_1803___yvbT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1071
# Identity: 722/1071 (67.4%)
# Similarity: 722/1071 (67.4%)
# Gaps: 96/1071 ( 9.0%)
# Score: 2242.0
#
#
#=======================================
BSNT_05139___ 1 -----------ATGTCTAA--CAACC--------AACGCAAAGATACCTT 29
||.|.|.| |||.| |.||||.|| |||
BPUM_1803___y 1 ATGGGGACATCATTTATGAGTCAATCAGTTTTAAAGCGCACAG----CTT 46
BSNT_05139___ 30 GCTTTCTGTCTTGAATTTAT-CTCCGGTTGT-TCAG--GGAGGAACGATT 75
.|||.||.||.||||||| ||| ||| .||| ||.||.||.|||
BPUM_1803___y 47 --ATTCCGTTTTAAATTTATCCTC----TGTGACAGAAGGCGGTACCATT 90
BSNT_05139___ 76 GCAGAATCATTCCGAA-ACAGCATGGACTTGGC-------GCGCCGGGCA 117
...||||| ||..||| |.||.|||.|.||.|| |||
BPUM_1803___y 91 AAGGAATC-TTTTGAACATAGTATGAATTTAGCAAAAAAGGCG------- 132
BSNT_05139___ 118 GAGGAATGGGGCTATCACCGTTACTGGCTTGCTGAACATCATAATATAGA 167
|||.|.|||||.|||||..|.||||||||.||.|||||.||||||||.||
BPUM_1803___y 133 GAGAAGTGGGGTTATCATAGATACTGGCTCGCAGAACACCATAATATGGA 182
BSNT_05139___ 168 AGGTGTTGCAAGCTCTGCCACCGCAGTTTTGATTGGCCATATTGCCGGAG 217
||||||||||||.||.||.||..|.|||||.||.||..|||||||.||.|
BPUM_1803___y 183 AGGTGTTGCAAGTTCAGCAACGTCCGTTTTAATAGGGTATATTGCTGGCG 232
BSNT_05139___ 218 GCA-CGAAGAAAATCCGCGTCGGTTCCGGCGGCATTATGCTCCCGAACCA 266
|.| |||| |||||.||.||.||.||.|||||.||||||||.||.|||||
BPUM_1803___y 233 GAACCGAA-AAAATTCGAGTAGGATCTGGCGGAATTATGCTGCCAAACCA 281
BSNT_05139___ 267 CTCTTCATTAGTCATTGCTGAACAATTCGGCACACTGGAAACACTGTATC 316
|||||||.|.||.|||||||||||||||||||||||.||.|||.|.||||
BPUM_1803___y 282 CTCTTCACTTGTTATTGCTGAACAATTCGGCACACTTGAGACATTATATC 331
BSNT_05139___ 317 CCGGGCGGATTGATCTGGGGCTTGGACGTGCGCCGGGAACAGACCAATTG 366
|.|||.|.||||||.|.||.||||||.|.||.||.||.|||||.||.||.
BPUM_1803___y 332 CGGGGAGAATTGATTTAGGTCTTGGAAGAGCACCAGGGACAGATCAGTTA 381
BSNT_05139___ 367 ACAGCCAGAGCGCTCCGAAG-AAACATCAACAGCGGTGAGGATTTTCCAG 415
||.||.||.||.||..||.| ||.|.|| |.|..||.||.|||||.||.|
BPUM_1803___y 382 ACGGCAAGGGCACTTAGACGTAATCTTC-ATAATGGAGAAGATTTCCCTG 430
BSNT_05139___ 416 AACAATTAGAGGAACTGC-GCAATTATTTTAAACC-----GTCAGG--AA 457
||||..||||.|||||.| |||| |||||.||||| |.|||| ||
BPUM_1803___y 431 AACAGCTAGAAGAACTTCGGCAA-TATTTCAAACCAACCGGACAGGTCAA 479
BSNT_05139___ 458 ATGTGCGCAATCAAGTTCGCGCCATTCCCGGAGAGGGCATAGATGTGCCG 507
| ||.||.||..|.|||.||||.||||||||..||||..|.|||
BPUM_1803___y 480 A-------AAACATGTAAGAGCCGTTCCAGGAGAGGGACTAGACATTCCG 522
BSNT_05139___ 508 ATTTGGCTGCTGGGCTCAAGCGGCTTCAGCGCCCGTCTGGCTGGCGAACT 557
||||||||.||.||.|||||.||.||.|||||..|.||.||.||.||.||
BPUM_1803___y 523 ATTTGGCTACTTGGTTCAAGTGGATTTAGCGCAAGACTTGCAGGAGAGCT 572
BSNT_05139___ 558 TGGTCTTCCGTTTGCGTTCGCGGCCCATTTCTCACCGGCGAATACGGTTC 607
|||..|.||.|||||.||.|||||.|||||.|||||....|||||..|||
BPUM_1803___y 573 TGGATTGCCATTTGCATTTGCGGCACATTTTTCACCTAAAAATACAATTC 622
BSNT_05139___ 608 CCGCTTTGGAGCTGTACCGCAATTCCTTCACGCCGTCAGACGTGCTCGAC 657
|.|||||.||||||||..|..|.||.||.|...|.||.||.|||.|..|.
BPUM_1803___y 623 CTGCTTTAGAGCTGTATAGACAGTCATTTAGAACTTCTGATGTGTTAAAA 672
BSNT_05139___ 658 GAACCGTATGCGATGGTCGGTGTCACCATTATCGCGGCAGATACAAACGA 707
||.||.|||||.|||||.||.||.||...|.|.||.|||||| ||||| |
BPUM_1803___y 673 GAGCCTTATGCCATGGTGGGGGTGACAGCTTTTGCTGCAGAT-CAAAC-A 720
BSNT_05139___ 708 GAAAGCGCAGCACCTT--GCGACTTCGCATTATCAAAGGTTTCTTGA-TC 754
||..|.||.|.|..|| ||.||.||.||||||||..||||| ||.| ||
BPUM_1803___y 721 GAGCGAGCTGAATATTTGGCAACGTCTCATTATCAGCGGTTT-TTAAGTC 769
BSNT_05139___ 755 TTGTCCGCGGTACGCC--GAACCAGCTTAAACCGCCTGTTGAGGATATGG 802
|..|.||...|||.|| ||| |.||.|||.|||||||.||...|||||
BPUM_1803___y 770 TCATTCGAAATACCCCGGGAA--AACTCAAAGCGCCTGTCGACAGTATGG 817
BSNT_05139___ 803 ACCAAATCTGGAGCCCGTATGAAAAAGCGATGGTCAATGAGCAGCTGAGC 852
||....|.|||||.||.|||||||||||||||||..||||.||..|.||.
BPUM_1803___y 818 ACGGTCTTTGGAGTCCATATGAAAAAGCGATGGTGGATGAACAATTAAGT 867
BSNT_05139___ 853 TCCACGATTGTCGGAGGTCCGGAAGAAGTG-AAGGCGAAGCTT-GAAGAT 900
||.||.||..||||||.|..||||.|.||| ||.|.||| || ||||..
BPUM_1803___y 868 TCGACAATGATCGGAGATAAGGAAAAGGTGAAAAGAGAA--TTGGAAGCC 915
BSNT_05139___ 901 TTCGTCAAAACGACACAGGCTGACGAAATTATGGTTAACTCAGAAACCTT 950
||.||..||.|.||.||.||.||||||.|.|||.||||.||.||.|..||
BPUM_1803___y 916 TTTGTTGAAGCCACTCAAGCAGACGAAGTGATGATTAATTCGGATATGTT 965
BSNT_05139___ 951 TGAACACGCAGACAGAATGCGTTCGTTTGAAATCATCGCTGACGTTT--- 997
|||.||...|||.|||||||||||.|.||||||.||||..||..|||
BPUM_1803___y 966 TGATCATCAAGAAAGAATGCGTTCATATGAAATTATCGGCGAGATTTTCC 1015
BSNT_05139___ 998 -------GGAACAACAGATAA 1011
|.||.|| |.||||
BPUM_1803___y 1016 AAGAGGCGCAAGAA-AAATAA 1035
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