Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03049 and BPUM_1799

See Amino acid alignment / Visit BSNT_03049 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:34
# Commandline: needle
#    -asequence dna-align/BSNT_03049___yoeD.1.24716.seq
#    -bsequence dna-align/BPUM_1799.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03049___yoeD-BPUM_1799.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03049___yoeD-BPUM_1799.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03049___yoeD
# 2: BPUM_1799
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 251
# Identity:     169/251 (67.3%)
# Similarity:   169/251 (67.3%)
# Gaps:          40/251 (15.9%)
# Score: 571.5
# 
#
#=======================================

BSNT_03049___      1 ATGTATTTAACGATTGAAGAAACAGCAGAATA--TACAA--ATCTTTCAG     46
                     |||||||||||.||||||||||||||.|||||  ||.||  ||||    |
BPUM_1799          1 ATGTATTTAACAATTGAAGAAACAGCTGAATACTTAGAAGTATCT----G     46

BSNT_03049___     47 AGGATTATATT---AAA-------AGCTTGGTGCTCGAAGGGAAAATCAG     86
                     |||..||||||   |||       |||               ||||..||
BPUM_1799         47 AGGCGTATATTGAGAAATTAATTCAGC---------------AAAAAAAG     81

BSNT_03049___     87 AGCCGTT-----CATGACGGGGAGCAATTTTTGATTTAT-AAGGAACAGT    130
                     |.|||||     ..||||||.||...||.|.|.|||||| |||| |||||
BPUM_1799         82 ATCCGTTTTGTATTTGACGGAGAATCATATCTCATTTATCAAGG-ACAGT    130

BSNT_03049___    131 TCAAAACGCATCTCGAACAGCTGGAGAATTACAAAGCACTGGTGCAGGAA    180
                     |..||||||||.|..|.|||||.||..|.||.||||..||.||.||.||.
BPUM_1799        131 TTCAAACGCATATAAAGCAGCTTGAACAATATAAAGAGCTCGTCCAAGAG    180

BSNT_03049___    181 ATATTAAATGAACCGATCCCGGAAGATATTGATGTAAAGGATGAGGATTA    230
                     ||.||||||||||||||.||.||||||...|||||||||||.||.|||||
BPUM_1799        181 ATTTTAAATGAACCGATTCCTGAAGATCCAGATGTAAAGGACGAAGATTA    230

BSNT_03049___    231 G    231
                     |
BPUM_1799        231 G    231


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