Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03021 and BPUM_1786
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:33
# Commandline: needle
# -asequence dna-align/BSNT_03021___yngJ.1.24716.seq
# -bsequence dna-align/BPUM_1786___yngJ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03021___yngJ-BPUM_1786___yngJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03021___yngJ-BPUM_1786___yngJ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03021___yngJ
# 2: BPUM_1786___yngJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1181
# Identity: 850/1181 (72.0%)
# Similarity: 850/1181 (72.0%)
# Gaps: 76/1181 ( 6.4%)
# Score: 2926.0
#
#
#=======================================
BSNT_03021___ 1 GTGAATTTTGAGCTGACAAAAGAACAACAAATGGTGCGTGAAATGGTAAA 50
.||.|||||||..|.||.|||||||||||||||.|.||..|.|||||.||
BPUM_1786___y 1 ATGGATTTTGAATTAACGAAAGAACAACAAATGATCCGCCAGATGGTCAA 50
BSNT_03021___ 51 AGATTTTGCGAAAAAAGAAATTGCTCCTCACGCTGAA--CATGTAGATCA 98
|||.|||||.|||..|||||||||.||.|.||||.|| || |.||| .
BPUM_1786___y 51 AGAATTTGCTAAAGCAGAAATTGCACCACTCGCTCAAACCA--TTGAT-G 97
BSNT_03021___ 99 AACAGGC-GAGTTCCCGATGCAAACATTTGAAAAAATGGGTGAACTCGGT 147
||||.|| |..|||||....|||||.|||.||||||||||.||.|||||.
BPUM_1786___y 98 AACAAGCTGTATTCCCAGCCCAAACTTTTCAAAAAATGGGGGAGCTCGGC 147
BSNT_03021___ 148 CTGATGGGTATTCCATTTCCAGAAGAATATGGCGGATCTGGCGGTGATAC 197
.||||||||||||||||||||||..||||.||.|||||.||.||.|||||
BPUM_1786___y 148 TTGATGGGTATTCCATTTCCAGAGAAATACGGAGGATCAGGGGGAGATAC 197
BSNT_03021___ 198 GATTTCATATGCCTTAGCGGTTGAAGAAGTCGGCAA--AGCCTGCGGCAG 245
.||.||||||||..|.||.||.||||||.||||.|| ||..|||| ||
BPUM_1786___y 198 AATCTCATATGCACTCGCTGTAGAAGAAATCGGAAAACAGTGTGCG--AG 245
BSNT_03021___ 246 TACTGGATTAAGCTATGCTGCAGCGGTCTCGCTAGGCGCAAGCCCTCTTT 295
|||.||..|.||||||||.|||||.||.||..||||.||||||||.||||
BPUM_1786___y 246 TACAGGTCTTAGCTATGCCGCAGCCGTTTCCTTAGGTGCAAGCCCCCTTT 295
BSNT_03021___ 296 ACTACTTCGGAACAGAAGAGCAAAAACA--GACGCATTTGACG--CCGCT 341
|.||||||||.|||||.||.|||||| | ||| ||..| || |||||
BPUM_1786___y 296 ATTACTTCGGTACAGAGGAACAAAAA-ATGGAC-CACCT--CGTTCCGCT 341
BSNT_03021___ 342 GGCTTCAGGCACAGCACTCGGATCATTCGGCCTGACGGAGCCAAATGCCG 391
|||.||.||.|||||||||||.||.|||||..|.||||||||||||||.|
BPUM_1786___y 342 GGCATCTGGAACAGCACTCGGTTCCTTCGGATTAACGGAGCCAAATGCAG 391
BSNT_03021___ 392 GCTCAGATGCAGGAGGCACTCAAACAAAAGCGATTTCAAATGGTGAC--- 438
|.||||||||...|||.||..||||||||||| .||||| |||
BPUM_1786___y 392 GATCAGATGCTAAAGGAACAAAAACAAAAGCG--GTCAAA----GACGGA 435
BSNT_03021___ 439 ---GAGTATGTAATCAACGGCGAAAAGTGCTGGATCACTAATGCAAGCTA 485
||.|||||.||||.|||.||.||.|||||||||||.||.||.|..|.
BPUM_1786___y 436 CAAGAATATGTGATCAGCGGGGAGAAATGCTGGATCACAAACGCCAATTT 485
BSNT_03021___ 486 CGCACGCACAGTTATTGTAACCGCCGTAACAGGCAAAAACAAAG---ACG 532
.||..|.||..||||.||.|||||.|||.|.| |..||.|.| |||
BPUM_1786___y 486 TGCCAGAACCATTATCGTTACCGCTGTATCGG---ATCACGATGAGCACG 532
BSNT_03021___ 533 GAAAAAAC------ATCATCTCCGCATTAATCGT-GCCAACTGACACACC 575
| | |||||||||||.||.||.|| |..||..|.|| |..
BPUM_1786___y 533 G------CCGCCCGATCATCTCCGCCTTCATTGTAGAAAAAGGGCA-AAA 575
BSNT_03021___ 576 AGGACTTACGATTACGAGCCCGTACGATAAAATGGGCGTCCGCGGTTCGA 625
|||.||.||.|||||.|..||.|||||.||||||||.||.||||||||..
BPUM_1786___y 576 AGGGCTAACCATTACAAATCCATACGACAAAATGGGGGTGCGCGGTTCAG 625
BSNT_03021___ 626 ATACAGCGGAAAT--TTTGCTTGAGGATGTAAGAGTGCCTGCGGCCA--A 671
||||.||.||||| ||| |.||..|.|||.|.||.||.|| .|| |
BPUM_1786___y 626 ATACGGCTGAAATCATTT--TAGATAACGTACGTGTACCAGC--ACATCA 671
BSNT_03021___ 672 CTTACTTGGCGATCCAACAAAAGGGTTTAAACAGTTTCTATATACGCTGG 721
..||.|.||.|||||||..|||||.||.||.||.|||.||||.|||.|.|
BPUM_1786___y 672 TATATTAGGAGATCCAAACAAAGGCTTCAAGCAATTTTTATACACGTTAG 721
BSNT_03021___ 722 ACGGAGGGCGAATCTCCATCGCTGCTCTT-GCAGTCGGCATTGCCCAAGC 770
||||.||||||||.||.||.||||| ||| .|.||.||.||.||.|||||
BPUM_1786___y 722 ACGGTGGGCGAATTTCGATTGCTGC-CTTATCTGTTGGAATCGCGCAAGC 770
BSNT_03021___ 771 GGCCCTTGACGCATCATTGGCATATGCGAAAGAACGAAAGCAGTTTGGAC 820
.||.||.||.||.||..|..|.|||||.||.|||.|||||||.|||||.|
BPUM_1786___y 771 TGCACTAGATGCTTCTCTCTCTTATGCAAAGGAAAGAAAGCAATTTGGGC 820
BSNT_03021___ 821 AGCCGATTTCTTCCTTTCAAGCGATTCAATTTAAGCTTGCTGACATGGCG 870
||.|..||||||||||.|||||.|||||.||||||||.||.||.||||||
BPUM_1786___y 821 AGACCCTTTCTTCCTTCCAAGCCATTCAGTTTAAGCTGGCGGATATGGCG 870
BSNT_03021___ 871 ATGGAAATTGATCTGGCACGGCAAATGGTGTTAAAAGCCGCCTGGCTGAA 920
|||.||||.||.||.||..|.||||||||||..|||||.|||||||||||
BPUM_1786___y 871 ATGCAAATAGAACTCGCTAGACAAATGGTGTGGAAAGCGGCCTGGCTGAA 920
BSNT_03021___ 921 AGACCATAACCACCCGTTCACCAAAGAAGCGGCGTACGCCAAGCTATTCG 970
|||.|||..|.|.||.||.||.||||||||.||.|||||.||.||.||||
BPUM_1786___y 921 AGATCATGGCAAGCCATTTACTAAAGAAGCTGCCTACGCAAAACTTTTCG 970
BSNT_03021___ 971 CATCTGAAATGGCGACAAGAGCTTGCAATCAAGCC--------ATTCAAA 1012
|.||.||||||||||||| ||.|||||| .|.||||
BPUM_1786___y 971 CTTCAGAAATGGCGACAA--------AAGCAAGCCTCGATGCTGTCCAAA 1012
BSNT_03021___ 1013 TCCATGGAGGTTCAGGCTATATGAAAGAGTATGGGGTGGAACGGATGCTG 1062
|.||.|||||..||||||||||||||||||..|||||.||.|||.|..||
BPUM_1786___y 1013 TTCACGGAGGAACAGGCTATATGAAAGAGTGCGGGGTAGAGCGGCTTGTG 1062
BSNT_03021___ 1063 CGGGATGCAAAATTAATGGAAATCGGTGAAGGCACATCTGAAATTCAGCG 1112
.|.|||||.||..|.||||||||.||.||||||||.||||||||||||||
BPUM_1786___y 1063 AGAGATGCCAAGCTCATGGAAATTGGAGAAGGCACCTCTGAAATTCAGCG 1112
BSNT_03021___ 1113 TCTCGTGATCGCCAGACAGCTTTTAAAATAA 1143
|.|.||.||.||.|||||..|.|||...|||
BPUM_1786___y 1113 TTTAGTCATTGCAAGACAATTGTTAGCTTAA 1143
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