Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03019 and BPUM_1784
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:33
# Commandline: needle
# -asequence dna-align/BSNT_03019___yngH.1.24716.seq
# -bsequence dna-align/BPUM_1784___yngH.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03019___yngH-BPUM_1784___yngH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03019___yngH-BPUM_1784___yngH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03019___yngH
# 2: BPUM_1784___yngH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1435
# Identity: 914/1435 (63.7%)
# Similarity: 914/1435 (63.7%)
# Gaps: 185/1435 (12.9%)
# Score: 2662.0
#
#
#=======================================
BSNT_03019___ 1 ATGTTTACAAAAGTACTGATCGCCAACCGCGGAGAAATTGCAATGAGAAT 50
|||||.|.||||||||||||.|||||.||.||.||||||||.....||||
BPUM_1784___y 1 ATGTTCAAAAAAGTACTGATTGCCAATCGAGGCGAAATTGCTCGTCGAAT 50
BSNT_03019___ 51 TATCCGAACATGCAGCCGTCTCGGCATTAAAACGGTTGCGGTTTATTCAG 100
.||.||.||.||.|...|.||.||.||.||.||.||.||.||||||||||
BPUM_1784___y 51 CATTCGGACTTGTAAAAGGCTAGGGATCAACACCGTGGCTGTTTATTCAG 100
BSNT_03019___ 101 AAGCCGACAAGGACGCGCTCCA--TACAA-AAGCCGCTACAGAGGCTTAT 147
|.||.||..||.|.|||||.|| |.||| ||||.| |||| .||.|||
BPUM_1784___y 101 AGGCAGATCAGCATGCGCTTCATGTGCAAGAAGCAG--ACAG-CGCCTAT 147
BSNT_03019___ 148 TTGATCGGAGAATCGAGAGTCAGTGAAAGTTATTTAAATATAGAGAG-AA 196
.|.||.||||...|.|.|||...||||||.||||||||.||.|| || .|
BPUM_1784___y 148 CTCATTGGAGGCGCAAAAGTATCTGAAAGCTATTTAAACATGGA-AGTGA 196
BSNT_03019___ 197 TCATAAAGACGGCGAAAAAAGCAAATGCCGACGCGATCCACCCGGGATAT 246
||||..|||..||.||..|..|||||.|.||.||.|||||.||.||.|||
BPUM_1784___y 197 TCATCGAGATTGCCAAGCAGACAAATACAGATGCCATCCATCCTGGCTAT 246
BSNT_03019___ 247 GGATTGTTATCAGAAAA--CAGTCGGTTCGCTGAACGCTGC--AAGC-AA 291
||..|.||||||||||| |||.| ||.||||||||.||| .||| ||
BPUM_1784___y 247 GGCCTTTTATCAGAAAATGCAGCC--TTTGCTGAACGATGCCGCAGCGAA 294
BSNT_03019___ 292 GAAAACATCGTGTTTATCGGACCTTC--CCC---TGATATCATCGCAAAG 336
|.| ||||..|||||.||.||.|| ||| |.|| |||..||
BPUM_1784___y 295 GGA---ATCGCTTTTATTGGTCCATCTGCCCAGGTCAT-TCAGTGC---- 336
BSNT_03019___ 337 ATGGGCAGCAAAATTGAAGCGCGAAAAGCAATGGAGGCTGCAGGTGTCCC 386
|||||||..|||||||||||..|||||.|.|||||....||.||..||||
BPUM_1784___y 337 ATGGGCAATAAAATTGAAGCAAGAAAAACGATGGATCAAGCGGGAATCCC 386
BSNT_03019___ 387 TGTGGTACCGGGCGTTTCTGAATCCCT------CGGAGATATAGAGGCAG 430
..|.|||||.||||||||.|.|.|.|| ||.||| |||.|.||
BPUM_1784___y 387 CATTGTACCTGGCGTTTCAGCACCTCTTTATGACGCAGA---AGAAGGAG 433
BSNT_03019___ 431 CCTG----CCGCACCGCATGTCAAATCGGCTATCCTGTCATGCTGAAAGC 476
.|.| .|||| ||| |.||||.||.||..|||||||.||.||
BPUM_1784___y 434 TCAGTAAAGCGCA------GTC-ACTCGGTTACCCGATCATGCTCAAGGC 476
BSNT_03019___ 477 TTCAGCGGGCGGAGGGGGCATCGGAATGCAGCGTGTTGAAAATGA--AGA 524
.|||...||.||.||.||.|||||.|||||||.|||...|||||| ||.
BPUM_1784___y 477 ATCAAGTGGAGGCGGAGGTATCGGCATGCAGCTTGTCCGAAATGATGAGG 526
BSNT_03019___ 525 AGCATTAAAAAAAGCGTACGAGGGAAA--CAAAAAGCGCGCAGCAGATTT 572
||| |....|||||.|..||.||||| .||||||.||||| .||.|||
BPUM_1784___y 527 AGC--TGCGTAAAGCTTTTGAAGGAAATCAAAAAAGAGCGCA-AAGTTTT 573
BSNT_03019___ 573 TTT--CGGTGACGGGTCGATGTATATAGAAAAAGTTATTGAACATGCGCG 620
||| | ||||||.||.|.|||||.|||||.||.||||||.|||||||
BPUM_1784___y 574 TTTAAC---GACGGGACGCTTTATATGGAAAAGGTCATTGAAGATGCGCG 620
BSNT_03019___ 621 TCACATCGAGGTTCA---GCTTTTGGCTGATCAACACGGCCATACAGTAC 667
||||||.||..|||| .||||| ||||..|..|||||||...||.|
BPUM_1784___y 621 TCACATTGAAATTCAAGTCCTTTT---TGATTCATTCGGCCATGGGGTTC 667
BSNT_03019___ 668 ATCTGTTTGAACGTGATTGCTCTGTTCAGAGGCGCCACCAAAAAGTCATT 717
|..|.|||||.||.||.||.||..|.||.||..|.|||||.|||.||||.
BPUM_1784___y 668 ACTTATTTGAGCGCGACTGTTCACTCCAAAGAAGACACCAGAAAATCATC 717
BSNT_03019___ 718 GAAGAAGCACCGTCTCCATTTGTAGACGATGAA---CTAAGA-ATGAAGA 763
|||||||||||..||.|.|.|.| ||||.|| .||||| |.| |||
BPUM_1784___y 718 GAAGAAGCACCAGCTGCCTGTCT---CGATAAATCCGTAAGACAAG-AGA 763
BSNT_03019___ 764 TTGGGCAAACAGCGGTAAAAGCAGCAAAGGCAATCGGCTATACGAACGCA 813
|.||.||||..|||||.||||||||.||.||.|||||||||...||.|||
BPUM_1784___y 764 TGGGACAAATGGCGGTGAAAGCAGCCAAAGCCATCGGCTATGAAAATGCA 813
BSNT_03019___ 814 GGCACCATCGAATTCATAGTTGACCAGAAGCAAAATTTTTATTTCCTCGA 863
||.||.||.||||...||||.||.||.||.|||.|.|||||.||.||.||
BPUM_1784___y 814 GGGACAATTGAATGTTTAGTCGATCAAAACCAACACTTTTACTTTCTTGA 863
BSNT_03019___ 864 AATGAATACGAGACTGCAAGTTGAACACCCCGTGACTGAAGAAATAACAG 913
.|||||.||||||.|.|||||.||||||||.||.||.||||||||.||||
BPUM_1784___y 864 GATGAACACGAGATTACAAGTAGAACACCCTGTCACAGAAGAAATTACAG 913
BSNT_03019___ 914 GCCTGGA-CTTAGTTGAGCAGCAGCTGCGGATTGCTGCGGGCCATACACT 962
|..|.|| ||| |||||..||||||||...||.||.|| .|
BPUM_1784___y 914 GAATTGATCTT-GTTGAAGAGCAGCTGAAAATCGCAGC----------AT 952
BSNT_03019___ 963 CACA-----TTCTCC------CAAAAAGACATCCAACGGAACGGGCATGC 1001
||.| || ||| ||..|.|||||.||.|..|.|||||||||
BPUM_1784___y 953 CAGAGCCGCTT-TCCTTTAATCAGGAGGACATTCATCAAATCGGGCATGC 1001
BSNT_03019___ 1002 GATAGAGGTTCGAATATACGCGGAAGATCCCAAGACCTTCTTCCCGTCAC 1051
.||.|||||..||||.||.|||||.||||||...|||||.|..|||||||
BPUM_1784___y 1002 CATCGAGGTCAGAATCTATGCGGAGGATCCCGTCACCTTTTATCCGTCAC 1051
BSNT_03019___ 1052 CAGGTACGATCACTGCGTTTTCACTTCCTGA-----CCAAAAAGGAGTCA 1096
||||.||.||||||..|.|.||..|.||.|| ||.|.| |..
BPUM_1784___y 1052 CAGGAACAATCACTCGGCTATCTATGCCAGAAGCTCCCTATA-----TAC 1096
BSNT_03019___ 1097 GACACGAAT---GTGCGGTAGCAAAAGACAGCACCGTTACCCCTTTTTAT 1143
|.||.|||| || ||..|||..|..|||..|.|||||||.|.|||.
BPUM_1784___y 1097 GCCATGAATCAAGT---GTGACAAGTGGGAGCGTCATTACCCCATATTAC 1143
BSNT_03019___ 1144 GACCCGATGATCGCTAAGATGATTGTCAAAGGCCAAACCAGAACAGAAGC 1193
||.||.|||||.||.||||||.|.||..|.||..||||..|||.|...||
BPUM_1784___y 1144 GATCCAATGATTGCGAAGATGGTCGTTTATGGTGAAACACGAAAACTTGC 1193
BSNT_03019___ 1194 AATTGAAAAACTAGAGACATCGCTTCGCGACTATCGTGTAGAGGGAATCA 1243
|||.|||..|.||.|..||.||.|.|..|..|||....||||.||.||||
BPUM_1784___y 1194 AATAGAACGATTAAAAGCAGCGTTACAAGCATATGAAATAGAAGGGATCA 1243
BSNT_03019___ 1244 AAACAAATCTT-CCGCTTCTCATA-------CAGG-----CTGC------ 1274
||.|.|| ||| ||||||.|.|.| |.|| ||||
BPUM_1784___y 1244 AATCCAA-CTTACCGCTTTTAAGAGAAATGGCGGGATCATCTGCTTTCTT 1292
BSNT_03019___ 1275 ----GGCA-----ACAAAGGCATTT-------AAAGAAGGGGATG----- 1303
|||| ||||..| |||| |||.||.||||.|
BPUM_1784___y 1293 ACATGGCAGCATCACAACCG-ATTTTCTTATGAAAAAAAGGGAGGGAAAC 1341
BSNT_03019___ 1304 ---TCACGACTGACTTTTTGAAACAACACCTATAA 1335
|||.||
BPUM_1784___y 1342 CGTTCATGA-------------------------- 1350
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