Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04989 and BPUM_1777
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:43
# Commandline: needle
# -asequence dna-align/BSNT_04989___yvgR.1.24716.seq
# -bsequence dna-align/BPUM_1777___cysJ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04989___yvgR-BPUM_1777___cysJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04989___yvgR-BPUM_1777___cysJ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04989___yvgR
# 2: BPUM_1777___cysJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1917
# Identity: 1313/1917 (68.5%)
# Similarity: 1313/1917 (68.5%)
# Gaps: 195/1917 (10.2%)
# Score: 4299.5
#
#
#=======================================
BSNT_04989___ 1 TTGCAACTTCAGGTAATGAACAGTCCGTTTAATCAGGAGCAGGCAGAGCT 50
|||||||||||.|||.||||||||||.||||.||||.||||||||||..|
BPUM_1777___c 1 TTGCAACTTCATGTATTGAACAGTCCTTTTAGTCAGCAGCAGGCAGACTT 50
BSNT_04989___ 51 CCTTAACCGCCTTCTGCCGACCTTGACCGAATC-CCAGAAAATCTGGCTG 99
.||.||.|..||.||.|||||.||.||.| ||| .||.|||||.|||||.
BPUM_1777___c 51 GCTCAATCAGCTGCTTCCGACTTTAACAG-ATCAACAAAAAATTTGGCTT 99
BSNT_04989___ 100 AGCGGATATTTATCCGCTCAATCTGTTTCCGCCCAAGAAGCTGCGGGTGC 149
|.|||.|||||| ||.||.||||.|||| |
BPUM_1777___c 100 ACCGGTTATTTA---------------TCAGCACAAGCAGCT-------C 127
BSNT_04989___ 150 --GCCGG--CGG---CAGCT----------------GTGTCTGCGGAAGC 176
||||| |.| ||||| .| |||||.|.|||
BPUM_1777___c 128 TAGCCGGATCAGAAACAGCTACTCAATCCCCTTCTCCT-TCTGCCGCAGC 176
BSNT_04989___ 177 ACCGGCACCGGCCGTTTCA--AAAGAAGTGACCGTTCTTTATGGTTCACA 224
|||.||.|.| |.|.||| |||||.||||||||.||||||||.|||||
BPUM_1777___c 177 ACCTGCGCAG--CCTGTCAGTAAAGATGTGACCGTCCTTTATGGCTCACA 224
BSNT_04989___ 225 GACGGGAAACGCACAGGGGCTTGCAGAAAATGCCGGCA-AGCAGCTTGAA 273
.||.||.||..|..|.||..|.|| |||||.|.|.||| ||||.|||||.
BPUM_1777___c 225 AACAGGTAATTCTGAAGGATTAGC-GAAAAGGGCAGCACAGCATCTTGAG 273
BSNT_04989___ 274 CAGAGCGGTTTTCAAGTGACCGTCTCATCCATGAGCGATTTTAAGCCGAA 323
.|||..||||||||||||||..||||.||.|||...||||||||.|||||
BPUM_1777___c 274 GAGAAAGGTTTTCAAGTGACGCTCTCTTCTATGTCAGATTTTAAACCGAA 323
BSNT_04989___ 324 TCAGCTGAAGAAGGTAACCAATCTTTTAATCGTCGTCAGTACTCATGGAG 373
|.|.|||||.||..||..||||.|..|.||..|||||||.||.|||||.|
BPUM_1777___c 324 TAATCTGAAAAAAATACACAATTTACTGATGATCGTCAGCACACATGGTG 373
BSNT_04989___ 374 AAGGCGAGCCGCCTGATAACGCGCTGTCGTTTCACGAATTTCTGCACGGA 423
|.||.||.||||||||.||.||.|||||.||.||.||||.|.|.||.||.
BPUM_1777___c 374 AGGGAGATCCGCCTGACAATGCTCTGTCTTTCCATGAATATGTCCATGGT 423
BSNT_04989___ 424 AGACGGGCGCCTAAGCTTGAAGATCTGCGTTTTTCCGTTTTGGCGCTTGG 473
|||||.|||||.|||||.||..||.|..|.|||||.|||.|..|||||||
BPUM_1777___c 424 AGACGTGCGCCAAAGCTCGATCATTTAAGCTTTTCTGTTCTATCGCTTGG 473
BSNT_04989___ 474 TGACAGTTCGTACGAATTTTTCTGCCAGACAGGGAAAGAATTTGATCAGC 523
.|||||.||.||||||||.|||||.|||||.||.||||||||||||.|||
BPUM_1777___c 474 CGACAGCTCCTACGAATTCTTCTGTCAGACTGGAAAAGAATTTGATGAGC 523
BSNT_04989___ 524 GCTTAGAAGAACTCGGCGGAA-------AACGGATTTCTCCGCGCGTTGA 566
||||..|||||||.||||||| .||.||| ||.||.||
BPUM_1777___c 524 GCTTCAAAGAACTTGGCGGAACGCGCCTGACAGAT-------CGAGTGGA 566
BSNT_04989___ 567 TTGCGATCTTGACTATGATGAACCGGCAGCCGAATGGCTTGA--GGGTGT 614
|||.||.|||||.||||||||.|||....|.|||||||||.| |||| |
BPUM_1777___c 567 TTGTGACCTTGATTATGATGAGCCGTTTTCTGAATGGCTTCAAGGGGT-T 615
BSNT_04989___ 615 A---------TT---GAAGGGATTAAATGAAGCTGGGGGCGGAAGCGC-- 650
| || ||||| |||||| |||
BPUM_1777___c 616 ACAGCTTCACTTAGCGAAGG-------TGAAGC------------CGCAG 646
BSNT_04989___ 651 ----CGCGC------CTGC-GCCGCCGGCTGCGTCTCAAAC--CGGTGAG 687
|.||| |.|| ||.||...|.||| |||| |.|| .
BPUM_1777___c 647 CATTCACGCAAGAATCAGCGGCAGCAAACAGCG----AAACAACAGT--T 690
BSNT_04989___ 688 TCTTCGTATTCCAGAACAAACCCGTTTCGGGCTGAAGTGTTAGAAAATTT 737
|||...||.||.|||||.||.||.|||...||.||||||.|.||||||.|
BPUM_1777___c 691 TCTGAATACTCAAGAACGAATCCTTTTTATGCGGAAGTGCTTGAAAATAT 740
BSNT_04989___ 738 AAATTTAAACGGCAGAGGATCAAATAAAGAAACACGCCATGTGGAGCTGT 787
.||..||||.|||.|.||.||.||.||||||||.||||||.|||||||.|
BPUM_1777___c 741 CAACCTAAATGGCCGCGGCTCTAACAAAGAAACCCGCCATTTGGAGCTTT 790
BSNT_04989___ 788 CTCTTGAAGGATCAGGCCTGACTTACGAGCCTGGTGACAGCCTCGGCGTC 837
|.||||||||||||||.||...|||.||.||.||||||||.||.||..|.
BPUM_1777___c 791 CACTTGAAGGATCAGGACTTGTTTATGAACCGGGTGACAGTCTTGGAATT 840
BSNT_04989___ 838 TATCCAGAAAACGATCCGGAACTTGT---CGAGCTGCTCCTTAAGGAAAT 884
||||||..|||.|||||....||||| .||.|||.|| |.||.||
BPUM_1777___c 841 TATCCAACAAATGATCCTACGCTTGTTGATGAACTGATC----ACGACAT 886
BSNT_04989___ 885 ---GAATTGGGACCCGGAAGAAATTGTGACGCTTAATAAGCAAGGTGATG 931
|| |||.|..|.||.|||...||.||..||.||||..|.||||| |
BPUM_1777___c 887 GCGGA--TGGAAGGCAGACGAAGCCGTAACTGTTCATAAAAACGGTGA-G 933
BSNT_04989___ 932 TC-CGTCCGCTGAAAGAAGCGCTGATTTCTCACTATGAGATTACCGTTCT 980
.| |.|||..|.||||||||.||.|..||.||.|.|||||||||.||..|
BPUM_1777___c 934 ACTCTTCCTTTAAAAGAAGCACTCACCTCACATTTTGAGATTACAGTGTT 983
BSNT_04989___ 981 CACAAAACCGCTTCTTGAACA----GGCAGCCCAGCTGACAGGGAACGAT 1026
.||||||||.|||||| .||| |||.| |..|||| |||..||
BPUM_1777___c 984 AACAAAACCCCTTCTT-CACAAGTTGGCGG---ACTTGAC---GAAAAAT 1026
BSNT_04989___ 1027 GAGCTTAGAGAG-----------CTTTTAGCCCCGGGAAATGAGGAGAAT 1065
|| || ||||||......||||||||.||.||.
BPUM_1777___c 1027 GA--------AGCCCTCCATGCCCTTTTAAAAGAAGGAAATGAAGAAAAG 1068
BSNT_04989___ 1066 GTAAAAGCCTATATTGAAGGGCGCGATTTGCTTGAT-CT-CGTCCGTGAC 1113
.|||||||.|||||.|.|||..|.|||||..|.||| || || ||.|||
BPUM_1777___c 1069 TTAAAAGCGTATATAGCAGGAAGAGATTTAGTCGATGCTACG--CGCGAC 1116
BSNT_04989___ 1114 TATGGCCCATTTAGTGTATCTGC-GCAGGAGTT---TGTCTCGATTTTGC 1159
|.|||.||.|||...|.|||.|| ||| ||.|| || |||||||..
BPUM_1777___c 1117 TTTGGTCCTTTTGAAGGATCAGCTGCA-GACTTCACTG---CGATTTTAA 1162
BSNT_04989___ 1160 GAAAAATGCCTGCCCGCCTTTATTCGATTGCAAGCAGTTTATCCGCAAAT 1209
|||||||.||||||||||||||||||||||||||||||.|....||.|||
BPUM_1777___c 1163 GAAAAATTCCTGCCCGCCTTTATTCGATTGCAAGCAGTCTGAAAGCGAAT 1212
BSNT_04989___ 1210 CCGGATGAAGTGCATTTAACAATCGGCGCAGTCCGCTACGATGCGCATGG 1259
...||.|||||.||.||.||.|||||.||.||..|.||.||||||||.||
BPUM_1777___c 1213 GAAGAAGAAGTTCACTTGACGATCGGTGCTGTGAGATATGATGCGCACGG 1262
BSNT_04989___ 1260 CCGTGAACGAAAAGGCGTCTGCTCGATTTTGTGCGCGGAACGTCTGCAGC 1309
..|.|||||..||||.|||||.||.|||||.||.||.||.||..||.|.|
BPUM_1777___c 1263 AAGAGAACGTCAAGGGGTCTGTTCCATTTTATGTGCAGAGCGCTTGGAAC 1312
BSNT_04989___ 1310 CGGGAGACACACTGCCGGTTTATGTACAGCACAATCAAAACTTTAAGCTT 1359
|.||.||.||||||||.||||||.|.||||||||||||||||||||||||
BPUM_1777___c 1313 CAGGTGATACACTGCCTGTTTATATTCAGCACAATCAAAACTTTAAGCTT 1362
BSNT_04989___ 1360 CC-GAAAGACCCTGAAACACCGATTATCATGGTGGGCCCTGGGACAGGCG 1408
|| |||| |||||||..|.|||||.||.||||||||.||.||.||||||.
BPUM_1777___c 1363 CCTGAAA-ACCCTGATGCTCCGATCATTATGGTGGGACCAGGCACAGGCA 1411
BSNT_04989___ 1409 TCGCACCTTTCCGTTCCTTTATGCAGGAGCGTGAGGAGACGGGAGCGGAA 1458
|.||.|||||||||||.|||||||||||.||.||.||.|..||.|| ||
BPUM_1777___c 1412 TTGCCCCTTTCCGTTCGTTTATGCAGGAACGAGAAGAAATCGGTGC--AA 1459
BSNT_04989___ 1459 --GGAAAGGCATGGATGTTCTTTGGCGATCAGCGCTTTGTCACGGATTTC 1506
||||||.|.|||.|.|||||.||.|||||||.||||||.|||||.|||
BPUM_1777___c 1460 GCGGAAAGTCGTGGTTATTCTTCGGTGATCAGCACTTTGTGACGGACTTC 1509
BSNT_04989___ 1507 CTTTACCAGACAGAGTGGCAGAATTGGCTCAAAGACGGTGTGCTGACAAA 1556
.|.||.||.||.||.|||||.||.|||.|.|||||.||.||..|.||.||
BPUM_1777___c 1510 TTATATCAAACCGAATGGCAAAAGTGGTTAAAAGATGGCGTCTTAACGAA 1559
BSNT_04989___ 1557 AATGGATGTGGCGTTCTCACGTGATACAGAAGAAAAAGTATATGTGCAGC 1606
||||||||||||.||.|||.|.|||.||||.||||||||||||||.||||
BPUM_1777___c 1560 AATGGATGTGGCTTTTTCAAGAGATTCAGAGGAAAAAGTATATGTTCAGC 1609
BSNT_04989___ 1607 ACCGCATGCTTGAA-CATAGCGCAGAATTGTTTGAATGGCTTCAAGAAGG 1655
|.|..||| ..||| ||.||...||||||.||.||||||||..|..||||
BPUM_1777___c 1610 ATCAAATG-AAGAAGCAAAGTAAAGAATTATTCGAATGGCTAGAGCAAGG 1658
BSNT_04989___ 1656 AGCGGCTGTTTACATTTGCGGAGATGAAAAGCACATGGCGCATGACGTCC 1705
.||..||||.||..|||||||||||||||||||.|||||||||||.||.|
BPUM_1777___c 1659 TGCCTCTGTATATGTTTGCGGAGATGAAAAGCATATGGCGCATGATGTTC 1708
BSNT_04989___ 1706 ATAACACATTGCTTGAAATTATCGAAAAAGAAGGCAATATGAGCCGCGAA 1755
||.|.||..|.||....|||||..||.|||||||....|||| ||.||
BPUM_1777___c 1709 ATCATACTCTTCTATCGATTATTCAAGAAGAAGGTGCGATGA---GCAAA 1755
BSNT_04989___ 1756 GAG---GC-GGAGGCTTATCTTGCCGATATGCAGCAGCAAAAACGCTATC 1801
||| || |.|.|| |||||.||..|..|||||||||||||||||||||
BPUM_1777___c 1756 GAGAAAGCAGAAAGC-TATCTAGCTAACTTGCAGCAGCAAAAACGCTATC 1804
BSNT_04989___ 1802 AGCGTGATGTATATTGA 1818
||||.||.|||||||.|
BPUM_1777___c 1805 AGCGCGACGTATATTAA 1821
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