Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04412 and BPUM_1750
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:57
# Commandline: needle
# -asequence dna-align/BSNT_04412___melA.1.24716.seq
# -bsequence dna-align/BPUM_1750___melA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04412___melA-BPUM_1750___melA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04412___melA-BPUM_1750___melA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04412___melA
# 2: BPUM_1750___melA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1374
# Identity: 926/1374 (67.4%)
# Similarity: 926/1374 (67.4%)
# Gaps: 108/1374 ( 7.9%)
# Score: 3045.0
#
#
#=======================================
BSNT_04412___ 1 ATGAAAAAGATTACATTTATCGGTGCAGGGAGCACGATTTTCGCCAAAAA 50
|||...||.|||||||||||||||||||||||.||..|.||.||.|||||
BPUM_1750___m 1 ATGTCTAAAATTACATTTATCGGTGCAGGGAGTACCGTCTTTGCTAAAAA 50
BSNT_04412___ 51 TGTTTTGGGAGACTGCCTGTTAACAGAA-------GCACTGAATGGA-TT 92
|.|.||.|||||.||..|||| ||||| ||..|| ||
BPUM_1750___m 51 TATATTAGGAGATTGTTTGTT-------CGTCCCCGCACT-AAGCGATTT 92
BSNT_04412___ 93 TGAGTTCGCTCTTTACGACATTGATCCCAAACGCCTGCAGGAATCCCAGC 142
|||.||||||.|.||.||.||.||.|..|||||.|||.|.|||||..|..
BPUM_1750___m 93 TGAATTCGCTTTATATGATATCGACCATAAACGGCTGAAAGAATCAGAAA 142
BSNT_04412___ 143 TCATGCTCGAAAATCTAAGAGACCGTTATAAC------CCAAGTGTGGCC 186
..||||||....||.|||.|| |.||| .||..||||.||
BPUM_1750___m 143 CGATGCTCCGCCATTTAAAAG------AGAACTACGGTGCACATGTGACC 186
BSNT_04412___ 187 ATCAACAGCTATGATGACAGAAAACTCGCCT-------TGCAAAACGCAG 229
||.|....||||.|..||.|||||...|||| |||||||
BPUM_1750___m 187 ATTACGTCCTATCACAACCGAAAAGAAGCCTTAAAGGATGCAAAA----- 231
BSNT_04412___ 230 GCTATGTCATCAATGCGATTCAGGTTGGAGGATACAAACCGAGCACAGTC 279
|||||.||.|||||.||.|||||||||||.|||...||.||||||||.
BPUM_1750___m 232 --TATGTGATTAATGCCATCCAGGTTGGAGGCTACCGGCCAAGCACAGTG 279
BSNT_04412___ 280 ATCGATTTCGAGATTCCTAAACGGTATGGGCTGCGCCAGACGATCGCCGA 329
||.|||||.||||||||.|||...||||||.|..|.||.|||||.||.||
BPUM_1750___m 280 ATTGATTTTGAGATTCCGAAAAAATATGGGTTAAGACAAACGATTGCGGA 329
BSNT_04412___ 330 TACAGTCGGCATCGGCGGGATATTCAGATCTCTCAGAACAATCCCGGTCT 379
|||.||.|||||.||||||||.|||.|.|..||..|||||.|.||.||..
BPUM_1750___m 330 TACGGTTGGCATTGGCGGGATCTTCCGCTTCCTTCGAACATTTCCTGTGA 379
BSNT_04412___ 380 TATTTGATATCGCAAAAGATATGGAGGAAATGTGCCCTGACGCATGGTTC 429
|..|||||.|.|||||.||.|||||.||..|.|||||..|.||.|..||.
BPUM_1750___m 380 TGCTTGATCTTGCAAAGGAGATGGAAGAGGTTTGCCCAAATGCTTTATTG 429
BSNT_04412___ 430 TTAAACTATACAAATCCAATGGCCACTCTTACAGGCGCCATGCTCCGCTA 479
|||||.||.|||||||||||||||||.||.|||||.||.|||||.|||||
BPUM_1750___m 430 TTAAATTACACAAATCCAATGGCCACACTGACAGGTGCAATGCTGCGCTA 479
BSNT_04412___ 480 TACCAATA-----TCAAAACAATCGGGCTCTGCCACAGTGTTCAAGTGTG 524
.|| | || ||||..|.||.||.||.||.||.||.||.|||||
BPUM_1750___m 480 CAC----ACCGGTTC-AAACGGTGGGTCTTTGTCATAGCGTGCAGGTGTG 524
BSNT_04412___ 525 CACGAAGGATTTATTTAAAGCTCTCGGAATGGAGCATGACGGAATTGAGG 574
.||.||||||.|||||.||.|.||.|.||||||.|||||.||||||||.|
BPUM_1750___m 525 TACAAAGGATCTATTTGAATCACTTGAAATGGATCATGAAGGAATTGAAG 574
BSNT_04412___ 575 AACGCATCGCGGGAATCAATCATATGGCTTGGCTTTTGGAAGTCAAAAAA 624
||...||.||.||.||||||||||||||.|||.|.||.|||||.|||..|
BPUM_1750___m 575 AAAAAATTGCTGGCATCAATCATATGGCGTGGTTATTAGAAGTGAAACGA 624
BSNT_04412___ 625 GACGGCACAGATTTATATCCAGAAATCAAAAGGAGAGCGAAAGAAAAACA 674
|||||.|.||||||.||||||||.||||||||.||||||||||||||.||
BPUM_1750___m 625 GACGGAAAAGATTTGTATCCAGACATCAAAAGAAGAGCGAAAGAAAAGCA 674
BSNT_04412___ 675 AAAAACAAAGCATCATGATATGGTGCGGTTTGAATTAATGGATAAGTTCG 724
||||.||..|||||||||||||||.||.|||||..|.||||||||.||||
BPUM_1750___m 675 AAAATCACGGCATCATGATATGGTACGTTTTGAGCTGATGGATAAATTCG 724
BSNT_04412___ 725 GCTATTATGTCACGGAATCGTCCGAACATAACGCAGAGTATCACCCATAC 774
|||||||||||||.||.||.||.||.|||||.||.||.||.|||||.||.
BPUM_1750___m 725 GCTATTATGTCACAGAGTCCTCAGAGCATAATGCCGAATACCACCCTTAT 774
BSNT_04412___ 775 TTTATTAAA---CGAAATTACCCTGAACTGATCAGCGAGCTGCAAATCCC 821
|||||.||| || .|||||.|||.|||||.|..|..|..|.||.||
BPUM_1750___m 775 TTTATCAAATCGCG---GTACCCAGAATTGATCGGTCAATTTAACATTCC 821
BSNT_04412___ 822 GCTCGACGAATATCCGAGAAGGTGCGTCAAGCAGATTGAAAATTGGGAGA 871
|||.||.|||||.||||||.|.||||...|.||.||..|.||.|||
BPUM_1750___m 822 GCTAGATGAATACCCGAGACGCTGCGAGGAACAAATCAACAACTGG---- 867
BSNT_04412___ 872 AA----ATGCGGGATGATATCGTCAACAATAAAAACCTTACGCACGAACG 917
|| |||..|.||||..|.||.|.|||||.|.|..|.||.||....||
BPUM_1750___m 868 AATTCCATGAAGCATGACCTTGTGAGCAATACACAGATCACACATACTCG 917
BSNT_04412___ 918 CTCAAAAGAATATGGTTCAAGAATTATAGAAGCAATGGAAACAAACGAAC 967
|||||||||||||||||||.|.||.||.|||||.||.|||||.||||..|
BPUM_1750___m 918 CTCAAAAGAATATGGTTCACGTATCATTGAAGCGATTGAAACGAACGTTC 967
BSNT_04412___ 968 CATTCACCTTCGGAGGAAACGTCTTGAATACA---GGGCTGATCGCCAAC 1014
|.||.|..||.|..||.||.||..||||.||| ||.||.||...||||
BPUM_1750___m 968 CCTTTAAATTTGCCGGGAATGTGCTGAACACAGGTGGCCTCATTCACAAC 1017
BSNT_04412___ 1015 CTTCCTTCAAAAGCGGTTGTGGAAGTGACATGCGTCGCCGACAGAAAAAA 1064
||.|||..|||||||..|||.||||||.|.||.||.||.|||.|.|....
BPUM_1750___m 1018 CTGCCTGAAAAAGCGTGTGTCGAAGTGCCGTGTGTTGCAGACCGGAGCGG 1067
BSNT_04412___ 1065 AATTACACCGTGCTTCGCCGGAGAACTGCCTGAGCAGCTTGCCGCCTTAA 1114
.||.|..||.|||...|.||||||..|.|||||.||.||.||.|...|.|
BPUM_1750___m 1068 GATCATGCCATGCCATGTCGGAGAGATTCCTGAACAACTGGCGGGACTGA 1117
BSNT_04412___ 1115 ACCGGACGAATATTAATACACAGCTGATGACAATCGAAGCGGCTGTCACA 1164
|||||||.|||||.|.|.|||||||.|||||.||||||||.||..|||..
BPUM_1750___m 1118 ACCGGACCAATATCAGTTCACAGCTCATGACCATCGAAGCAGCAATCAGC 1167
BSNT_04412___ 1165 CGGAAAAAAGAAGCGGTTTACCAAGCTGCAATGCTTGATCCGCATACAAG 1214
.|||||||||||...|||||.|||||.|||.|.||.|||||.||.|||||
BPUM_1750___m 1168 GGGAAAAAAGAACACGTTTATCAAGCGGCATTACTAGATCCACACACAAG 1217
BSNT_04412___ 1215 CGCGGAGCTTTCCATGAAGGACATCATCTCCATGTGTGACGATTTATTTG 1264
.||.||.||.||.||..|.|||||||||....|.||.||.||..|..|||
BPUM_1750___m 1218 TGCTGAACTGTCGATTGATGACATCATCAAATTATGCGATGAACTCATTG 1267
BSNT_04412___ 1265 CAGCACACGGCGATTGGCTTCCG--------------GAAT--------- 1291
.||||||..|.||...|||.||| ||||
BPUM_1750___m 1268 AAGCACATAGTGAGATGCTCCCGCATTTTGCAGATCCGAATCAATATGCC 1317
BSNT_04412___ 1292 ----------------ACAAATAA 1299
|.||||||
BPUM_1750___m 1318 GCATCAACCAACTTACAGAAATAA 1341
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